ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart27d12 |
|---|---|
| Clone Library Name | barley_pub |
>E134_MAIZE (Q9ZT66) Endo-1,3;1,4-beta-D-glucanase precursor (EC 3.2.1.-)| Length = 303 Score = 162 bits (411), Expect = 4e-40 Identities = 86/134 (64%), Positives = 98/134 (73%), Gaps = 4/134 (2%) Frame = +1 Query: 127 EPHSQRTDNPPDLTAGGN---ETGAVVDDL-AGFKAYVTGDAKSHRAVVLASDFYGFQAP 294 E HSQ DNPPD + G E G VV DL G +AYV+G A S RAVVLASD +G++AP Sbjct: 24 EAHSQCLDNPPDRSIHGRQLAEAGEVVHDLPGGLRAYVSGAASSSRAVVLASDVFGYEAP 83 Query: 295 LLRKIADKVGEAGYYVVVPDFFNGQPYTDGANRTEWFLAHSPVKAAQDAKPIFAALKKEK 474 LLR+I DKV +AGY+VVVPDF G D N TEW AHSPVKAA+DAKP+FAALKKE Sbjct: 84 LLRQIVDKVAKAGYFVVVPDFLKGDYLDDKKNFTEWLEAHSPVKAAEDAKPLFAALKKEG 143 Query: 475 RSYVGVGGYCWGGK 516 +S V VGGYCWGGK Sbjct: 144 KS-VAVGGYCWGGK 156
>YAE9_YEAST (P39721) Protein YAL049C| Length = 246 Score = 55.5 bits (132), Expect = 9e-08 Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 4/110 (3%) Frame = +1 Query: 199 DDLAGFKAYVTGDAK-SHRAVVLASDFYGFQAPLLRKIADKVGEAGYYVVVPDFFNGQPY 375 +++ G Y G + +V+ +D YG + + ADK AGY V VPD G Sbjct: 25 EEIFGLDTYAAGSTSPKEKVIVILTDVYGNKFNNVLLTADKFASAGYMVFVPDILFGDAI 84 Query: 376 TDG--ANRTEWFLAHSPVKAAQDAKPIFAALKKE-KRSYVGVGGYCWGGK 516 + +R WF HSP + LK E ++GV GYC+G K Sbjct: 85 SSDKPIDRDAWFQRHSPEVTKKIVDGFMKLLKLEYDPKFIGVVGYCFGAK 134
>DLHH_AQUAE (O67802) Putative carboxymethylenebutenolidase (EC 3.1.1.45)| (Dienelactone hydrolase) (DLH) Length = 231 Score = 46.2 bits (108), Expect = 5e-05 Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 9/108 (8%) Frame = +1 Query: 217 KAYVTGDAKSHRAVVLASDFYGFQAPL--LRKIADKVGEAGYYVVVPDFFNGQPYTDGAN 390 + Y+ + AV++ +++G ++PL +++I DK+ + G+ PDF+ GQ Y D + Sbjct: 15 RGYIATPKWAGPAVLVFHEWWGLESPLSNIKEICDKLADEGFVAFAPDFYKGQ-YADNPD 73 Query: 391 RTEWFLAHSPVKAAQDAKPIFAA----LKKEKRSY---VGVGGYCWGG 513 + K + IF A +K+ + +Y VG+ G+C GG Sbjct: 74 DAGKLMTEMFEKRMDEVDRIFQASVEFVKECRYTYPKKVGITGFCCGG 121
>YB4E_SCHPO (O14359) Hypothetical protein C30D10.14 in chromosome II| Length = 249 Score = 43.1 bits (100), Expect = 5e-04 Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 22/132 (16%) Frame = +1 Query: 187 GAVVDDLAGFKAYVTGDAKSHRAVVLASDFYGFQAPLLRKIADKVGEAGYYVVVPDFFNG 366 G +++ G YV G + R ++ D +G + +++ ADK+ + G+ V +PDF G Sbjct: 22 GKEIENFGGLTTYVVGSTSNTRVLIGFMDIFGL-SDQIKEGADKLADDGFTVYLPDFLEG 80 Query: 367 QPYTDGANRTEWFLAHSPVKAAQDAK----------------PIFAALKKEKRS------ 480 +P + P K +D K P A + + R+ Sbjct: 81 KPLP---------VTALPPKTPEDQKLCNDFFSTRISPNLHWPKLAKVVEAVRANHGPNV 131 Query: 481 YVGVGGYCWGGK 516 +G G+CWG K Sbjct: 132 TIGTYGFCWGAK 143
>LGT_STRA5 (Q8E0J4) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)| Length = 257 Score = 29.6 bits (65), Expect = 5.2 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 13/71 (18%) Frame = +1 Query: 244 SHRAVVLASDFYGFQAPLLRKIADKVGEAGYYV-------------VVPDFFNGQPYTDG 384 S+R ++ DF AP + IA +G G ++ VP+F Q Y DG Sbjct: 105 SYRRLINPIDFLDIAAPGVM-IAQAIGRWGNFINQEAYGRAVKNLNYVPNFIKNQMYIDG 163 Query: 385 ANRTEWFLAHS 417 A R FL S Sbjct: 164 AYRVPTFLYES 174
>LGT_STRA3 (Q8E669) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)| Length = 257 Score = 29.6 bits (65), Expect = 5.2 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 13/71 (18%) Frame = +1 Query: 244 SHRAVVLASDFYGFQAPLLRKIADKVGEAGYYV-------------VVPDFFNGQPYTDG 384 S+R ++ DF AP + IA +G G ++ VP+F Q Y DG Sbjct: 105 SYRRLINPIDFLDIAAPGVM-IAQAIGRWGNFINQEAYGRAVKNLNYVPNFIKNQMYIDG 163 Query: 385 ANRTEWFLAHS 417 A R FL S Sbjct: 164 AYRVPTFLYES 174
>THRC_BUCAI (P57289) Threonine synthase (EC 4.2.3.1)| Length = 429 Score = 29.3 bits (64), Expect = 6.8 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = -1 Query: 305 FLNNGAWNP*KSEARTTALWDLASP 231 FLNNG WNP K+ + + D++ P Sbjct: 284 FLNNGTWNPKKTVSTISNAMDISQP 308
>DLHH_METEX (P71505) Putative carboxymethylenebutenolidase precursor (EC| 3.1.1.45) (Dienelactone hydrolase) (DLH) Length = 291 Score = 29.3 bits (64), Expect = 6.8 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 8/81 (9%) Frame = +1 Query: 298 LRKIADKVGEAGYYVVVPDFFNGQ----PYTDGANRTEWFLAHSP---VKAAQDAKPIFA 456 ++ + ++ + GY+ + P+ + Q TD ++ P V + DA FA Sbjct: 94 IKDVCRRLAKLGYFALAPELYARQGDVSTLTDIQQIVSEVVSKVPDDQVMSDLDAAVAFA 153 Query: 457 -ALKKEKRSYVGVGGYCWGGK 516 K + +G+ G+CWGG+ Sbjct: 154 KGTGKADTARLGITGFCWGGR 174
>DLHH_SALTY (Q9L6M9) Putative carboxymethylenebutenolidase (EC 3.1.1.45)| (Dienelactone hydrolase) (DLH) Length = 270 Score = 28.9 bits (63), Expect = 8.9 Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 7/125 (5%) Frame = +1 Query: 163 LTAGGNETGAVVDDLAGFKAYVTGDAKSHRAVVLASDFYGFQAPLLRKIADKVGEAGYYV 342 ++AG + DD+ + A + V++ + +G + R I ++ GY Sbjct: 28 ISAGITSIPSQGDDMPAYYARPKASDGALPVVIVVQEIFGVHEHI-RDICRRLALEGYLA 86 Query: 343 VVPDFF--NGQP--YTDGANRTEWFLAHSP---VKAAQDAKPIFAALKKEKRSYVGVGGY 501 + P+ + G P + D +A P V A D +A+ + + G+ Sbjct: 87 IAPELYFREGDPNDFADIPTLLSGLVAKVPDSQVLADLDHVASWASRNGGDAHRLMITGF 146 Query: 502 CWGGK 516 CWGG+ Sbjct: 147 CWGGR 151
>DLHH_SALTI (Q8Z3B8) Putative carboxymethylenebutenolidase (EC 3.1.1.45)| (Dienelactone hydrolase) (DLH) Length = 270 Score = 28.9 bits (63), Expect = 8.9 Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 7/125 (5%) Frame = +1 Query: 163 LTAGGNETGAVVDDLAGFKAYVTGDAKSHRAVVLASDFYGFQAPLLRKIADKVGEAGYYV 342 ++AG + DD+ + A + V++ + +G + R I ++ GY Sbjct: 28 ISAGITSIPSQGDDMPAYYARPKASDGALPVVIVVQEIFGVHEHI-RDICRRLALEGYLA 86 Query: 343 VVPDFF--NGQP--YTDGANRTEWFLAHSP---VKAAQDAKPIFAALKKEKRSYVGVGGY 501 + P+ + G P + D +A P V A D +A+ + + G+ Sbjct: 87 IAPELYFREGDPNDFADIPTLLSGLVAKVPDSQVLADLDHVASWASRNGGDAHRLMITGF 146 Query: 502 CWGGK 516 CWGG+ Sbjct: 147 CWGGR 151
>CCR2_MACMU (O18793) C-C chemokine receptor type 2 (C-C CKR-2) (CC-CKR-2)| (CCR-2) (CCR2) (Monocyte chemoattractant protein 1 receptor) (MCP-1-R) (CD192 antigen) Length = 360 Score = 28.9 bits (63), Expect = 8.9 Identities = 16/52 (30%), Positives = 26/52 (50%) Frame = -3 Query: 483 IRPLLLLQCCEDWFSILSGFYRRVGQEPFCSVCPVRIRLSIEEVGHHNVVSS 328 I P++ E + LS F+R+ + FC CPV R +++ V N S+ Sbjct: 300 INPIIYAFVGEKFRRYLSMFFRKYITKRFCKQCPVFYRETVDGVTSTNTPST 351
>PUR9_BIFLO (Q8G6B1) Bifunctional purine biosynthesis protein purH [Includes:| Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) (AICAR transformylase); IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP synthetase) (ATIC)] Length = 545 Score = 28.9 bits (63), Expect = 8.9 Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 3/94 (3%) Frame = +1 Query: 169 AGGNETGAVVDDLAGFKAYVTGDAKSHRAVVLASDFYGFQAPLLRKIADKVG---EAGYY 339 +G NE + G + V G AK+H V + +D + A + ++AD G + + Sbjct: 117 SGANEADTIEKIDIGGPSMVRGAAKNHATVAIVTDPADY-ALVASRVADGTGFSLDERKW 175 Query: 340 VVVPDFFNGQPYTDGANRTEWFLAHSPVKAAQDA 441 + F + Y A EW H P A+ DA Sbjct: 176 LAAKAFAHTAAY--DATINEWTAKHWPKPASLDA 207
>Y134_RICCN (Q92JD3) Hypothetical protein RC0134| Length = 165 Score = 28.9 bits (63), Expect = 8.9 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Frame = -3 Query: 384 PVRIRLSIEEVGHHNVVSSFT-DFVGNFPQQWRLESVEIGGEDDGPVGFGVA 232 P+ + ++ V S T D + NFP +LE+ +GG D V V+ Sbjct: 70 PLTKKTALAHVDRFTYAGSLTHDVISNFPPNTQLEAYLVGGRDRSAVSISVS 121
>DLHH_YERPE (Q8ZAL4) Putative carboxymethylenebutenolidase (EC 3.1.1.45)| (Dienelactone hydrolase) (DLH) Length = 267 Score = 28.9 bits (63), Expect = 8.9 Identities = 23/115 (20%), Positives = 49/115 (42%), Gaps = 9/115 (7%) Frame = +1 Query: 199 DDLAGFKAYVTGDAKSHRAVVLASDFYGFQAPLLRKIADKVGEAGYYVVVPD-FFNGQPY 375 D+L + A + V++ + +G + + I ++ + GY + P+ +F Sbjct: 30 DELPAYIAKPDQHTGPYPVVIVVQEIFGVHEHI-QDICRRLAKQGYLAIAPELYFRQGDA 88 Query: 376 TDGANRTEWFLAHSPVKAAQDAKPI--------FAALKKEKRSYVGVGGYCWGGK 516 D +N E L ++ VK D + + +A+ + + G+CWGG+ Sbjct: 89 KDYSNINE--LVNNLVKKVPDRQVLVDLDHTAHWASRHGGDTKKLAITGFCWGGR 141 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,462,693 Number of Sequences: 219361 Number of extensions: 1148385 Number of successful extensions: 3683 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3582 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3679 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3927707336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
