ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart27d11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_462833.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 597 Score = 48.1 bits (24), Expect = 0.031 Identities = 24/24 (100%) Strand = Plus / Minus Query: 319 tcgcccgcgtccatcccgccgtcg 342 |||||||||||||||||||||||| Sbjct: 563 tcgcccgcgtccatcccgccgtcg 540
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 48.1 bits (24), Expect = 0.031 Identities = 24/24 (100%) Strand = Plus / Minus Query: 319 tcgcccgcgtccatcccgccgtcg 342 |||||||||||||||||||||||| Sbjct: 10028092 tcgcccgcgtccatcccgccgtcg 10028069
>dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1085F09 Length = 132713 Score = 48.1 bits (24), Expect = 0.031 Identities = 24/24 (100%) Strand = Plus / Minus Query: 319 tcgcccgcgtccatcccgccgtcg 342 |||||||||||||||||||||||| Sbjct: 108374 tcgcccgcgtccatcccgccgtcg 108351
>dbj|AK108762.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-G07, full insert sequence Length = 1619 Score = 48.1 bits (24), Expect = 0.031 Identities = 24/24 (100%) Strand = Plus / Plus Query: 319 tcgcccgcgtccatcccgccgtcg 342 |||||||||||||||||||||||| Sbjct: 953 tcgcccgcgtccatcccgccgtcg 976
>dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0036E02 Length = 145931 Score = 48.1 bits (24), Expect = 0.031 Identities = 24/24 (100%) Strand = Plus / Minus Query: 319 tcgcccgcgtccatcccgccgtcg 342 |||||||||||||||||||||||| Sbjct: 122585 tcgcccgcgtccatcccgccgtcg 122562
>gb|AC123075.5| Mus musculus BAC clone RP23-181C16 from chromosome 3, complete sequence Length = 198063 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 490 ggacggtggagatgctgaggagg 512 ||||||||||||||||||||||| Sbjct: 52803 ggacggtggagatgctgaggagg 52781
>gb|AC122529.5| Mus musculus BAC clone RP24-511F2 from 3, complete sequence Length = 159294 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 490 ggacggtggagatgctgaggagg 512 ||||||||||||||||||||||| Sbjct: 149400 ggacggtggagatgctgaggagg 149378
>gb|AF349677.1| Cochliobolus carbonum histone deacetylase 2 (HDC2) gene, complete cds Length = 2906 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 13 ctgctgtgcctgctacaatggc 34 |||||||||||||||||||||| Sbjct: 2460 ctgctgtgcctgctacaatggc 2481
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 gccgtgctgctcctctccctc 71 ||||||||||||||||||||| Sbjct: 999802 gccgtgctgctcctctccctc 999822
>ref|XM_482371.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1449 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 tcgccgtgctgctcctctccc 69 ||||||||||||||||||||| Sbjct: 41 tcgccgtgctgctcctctccc 61
>gb|AC007589.8| Drosophila melanogaster clone BACR20D10, complete sequence Length = 164712 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 328 tccatcccgccgtcgacgtcg 348 ||||||||||||||||||||| Sbjct: 28367 tccatcccgccgtcgacgtcg 28347
>gb|AC009537.6| Drosophila melanogaster clone BACR11M01, complete sequence Length = 160712 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 328 tccatcccgccgtcgacgtcg 348 ||||||||||||||||||||| Sbjct: 155857 tccatcccgccgtcgacgtcg 155837
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 ctcctctccctcctggccgtc 80 ||||||||||||||||||||| Sbjct: 8172064 ctcctctccctcctggccgtc 8172044 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 caccacggcctcgcccgcgt 328 |||||||||||||||||||| Sbjct: 31898709 caccacggcctcgcccgcgt 31898690 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 gctgctcctctccctcctgg 75 |||||||||||||||||||| Sbjct: 6577491 gctgctcctctccctcctgg 6577510
>gb|AY359007.1| Homo sapiens clone DNA57694 KIPV467 (UNQ467) mRNA, complete cds Length = 415 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 51 gccgtgctgctcctctccctcctgg 75 |||||| |||||||||||||||||| Sbjct: 34 gccgtggtgctcctctccctcctgg 58
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 ggtggacgcgccaccacggcc 318 ||||||||||||||||||||| Sbjct: 2920891 ggtggacgcgccaccacggcc 2920911
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 gctcgccaccctcgccgtgct 58 ||||||||||||||||||||| Sbjct: 3365831 gctcgccaccctcgccgtgct 3365851
>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29 Length = 310550 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 38 gctcgccaccctcgccgtgctgctc 62 ||||||||||||||||| ||||||| Sbjct: 247473 gctcgccaccctcgccgggctgctc 247449
>gb|AD001502.1|CH19F21246 Homo sapiens DNA from chromosome 19-cosmid f21246, genomic sequence Length = 44679 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 51 gccgtgctgctcctctccctcctgg 75 |||||| |||||||||||||||||| Sbjct: 24550 gccgtggtgctcctctccctcctgg 24526
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 tcgccgtgctgctcctctccc 69 ||||||||||||||||||||| Sbjct: 19676173 tcgccgtgctgctcctctccc 19676193
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 ctcctctccctcctggccgtc 80 ||||||||||||||||||||| Sbjct: 8169899 ctcctctccctcctggccgtc 8169879 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 caccacggcctcgcccgcgt 328 |||||||||||||||||||| Sbjct: 31989225 caccacggcctcgcccgcgt 31989206 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 gctgctcctctccctcctgg 75 |||||||||||||||||||| Sbjct: 6576704 gctgctcctctccctcctgg 6576723
>gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0019J12, complete sequence Length = 195583 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 ctcctctccctcctggccgtc 80 ||||||||||||||||||||| Sbjct: 103494 ctcctctccctcctggccgtc 103474
>ref|NM_207392.1| Homo sapiens KIPV467 (UNQ467), mRNA Length = 415 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 51 gccgtgctgctcctctccctcctgg 75 |||||| |||||||||||||||||| Sbjct: 34 gccgtggtgctcctctccctcctgg 58
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 353 cgccgagcttgcccgcggcga 373 ||||||||||||||||||||| Sbjct: 4660535 cgccgagcttgcccgcggcga 4660515 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 cgccgagcttgcccgcggcg 372 |||||||||||||||||||| Sbjct: 2442974 cgccgagcttgcccgcggcg 2442993
>gb|AE005129.1| Halobacterium sp. NRC-1 section 160 of 170 of the complete genome Length = 18209 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 424 cggacaccgacgccgagcaga 444 ||||||||||||||||||||| Sbjct: 3959 cggacaccgacgccgagcaga 3939
>gb|AE005007.1| Halobacterium sp. NRC-1 section 38 of 170 of the complete genome Length = 10293 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 421 gcccggacaccgacgccgagc 441 ||||||||||||||||||||| Sbjct: 8209 gcccggacaccgacgccgagc 8229
>dbj|AP005158.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0007M04 Length = 176293 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 tcgccgtgctgctcctctccc 69 ||||||||||||||||||||| Sbjct: 5124 tcgccgtgctgctcctctccc 5144
>dbj|AK119809.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-176-H02, full insert sequence Length = 3078 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 60 ctcctctccctcctggccgtc 80 ||||||||||||||||||||| Sbjct: 2904 ctcctctccctcctggccgtc 2924
>dbj|AP004658.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0042B03 Length = 167669 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 tcgccgtgctgctcctctccc 69 ||||||||||||||||||||| Sbjct: 151733 tcgccgtgctgctcctctccc 151753
>gb|AE003604.4| Drosophila melanogaster chromosome 3R, section 4 of 118 of the complete sequence Length = 303434 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 328 tccatcccgccgtcgacgtcg 348 ||||||||||||||||||||| Sbjct: 123348 tccatcccgccgtcgacgtcg 123328
>emb|AJ293408.1|HSA293408 Homo sapiens mRNA differentially expressed in malignant melanoma, clone NN i5 Length = 529 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 51 gccgtgctgctcctctccctcctgg 75 |||||| |||||||||||||||||| Sbjct: 72 gccgtggtgctcctctccctcctgg 96
>ref|NM_187610.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1437 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 gctgctcctctccctcctgg 75 |||||||||||||||||||| Sbjct: 372 gctgctcctctccctcctgg 391
>ref|NM_184914.1| Oryza sativa (japonica cultivar-group), mRNA Length = 4185 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 caccacggcctcgcccgcgt 328 |||||||||||||||||||| Sbjct: 712 caccacggcctcgcccgcgt 693
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 334 ccgccgtcgacgtcgtgcccgccgagct 361 |||||||||||| | ||||||||||||| Sbjct: 1517589 ccgccgtcgacgccctgcccgccgagct 1517562
>gb|AY062258.1| Oryza sativa (japonica cultivar-group) dev-stage seedling allene oxide synthase (AOS) gene, complete cds Length = 2465 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 gctgctcctctccctcctgg 75 |||||||||||||||||||| Sbjct: 767 gctgctcctctccctcctgg 786
>gb|AC107226.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0081P02, complete sequence Length = 162425 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 gctgctcctctccctcctgg 75 |||||||||||||||||||| Sbjct: 120253 gctgctcctctccctcctgg 120272
>gb|AE014075.1| Escherichia coli CFT073, complete genome Length = 5231428 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 528 cgctttcaccaccgccacca 547 |||||||||||||||||||| Sbjct: 4804290 cgctttcaccaccgccacca 4804271
>emb|AL139044.15| Human DNA sequence from clone RP11-6B20 on chromosome 6 Contains the ITPR3 gene for inositol 1,4,5-triphosphate receptor type 3, a novel gene and the IHPK3 gene for inositol hexaphosphate kinase 3, complete sequence Length = 134250 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cccttccggctctgcccacc 200 |||||||||||||||||||| Sbjct: 14188 cccttccggctctgcccacc 14169
>gb|AY310358.1| Oryza sativa (japonica cultivar-group) allene oxide synthase mRNA, complete cds Length = 1775 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 gctgctcctctccctcctgg 75 |||||||||||||||||||| Sbjct: 489 gctgctcctctccctcctgg 508
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 535 accaccgccaccatgagcag 554 |||||||||||||||||||| Sbjct: 1549477 accaccgccaccatgagcag 1549496
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 ccacggcctcgcccgcgtcc 330 |||||||||||||||||||| Sbjct: 4257259 ccacggcctcgcccgcgtcc 4257240
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 tcgcccgcgtccatcccgcc 338 |||||||||||||||||||| Sbjct: 1929574 tcgcccgcgtccatcccgcc 1929555 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 cttgcccgcggcgaagaaca 379 |||||||||||||||||||| Sbjct: 818765 cttgcccgcggcgaagaaca 818746
>dbj|AP005589.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0523B07 Length = 170510 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 ccacggcctcgcccgcgtcc 330 |||||||||||||||||||| Sbjct: 81018 ccacggcctcgcccgcgtcc 80999
>emb|AL512543.1|H0505A02 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0505A02, complete sequence Length = 83989 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 ccacggcctcgcccgcgtcc 330 |||||||||||||||||||| Sbjct: 53663 ccacggcctcgcccgcgtcc 53682
>dbj|AK066138.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013052K11, full insert sequence Length = 1974 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 gctgctcctctccctcctgg 75 |||||||||||||||||||| Sbjct: 635 gctgctcctctccctcctgg 654
>dbj|AK061758.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-A10, full insert sequence Length = 1843 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 gctgctcctctccctcctgg 75 |||||||||||||||||||| Sbjct: 512 gctgctcctctccctcctgg 531
>gb|DQ163023.1| Zea mays clone 4 phytol kinase (VTE5) mRNA, complete cds Length = 938 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 430 ccgacgccgagcagaagccgcctc 453 |||||||||||||| ||||||||| Sbjct: 134 ccgacgccgagcaggagccgcctc 111
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 atcccgccgtcgacgtcgtg 350 |||||||||||||||||||| Sbjct: 1063579 atcccgccgtcgacgtcgtg 1063560
>gb|AC091494.9| Oryza sativa chromosome 3 BAC OSJNBa0070N04 genomic sequence, complete sequence Length = 150663 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 caccacggcctcgcccgcgt 328 |||||||||||||||||||| Sbjct: 99962 caccacggcctcgcccgcgt 99943 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,843,249 Number of Sequences: 3902068 Number of extensions: 3843249 Number of successful extensions: 92355 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91022 Number of HSP's gapped (non-prelim): 1333 length of query: 563 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 540 effective length of database: 17,143,297,704 effective search space: 9257380760160 effective search space used: 9257380760160 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
