ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart27d08 |
|---|---|
| Clone Library Name | barley_pub |
>YS19_CAEEL (Q09651) Hypothetical protein ZK1307.9| Length = 369 Score = 147 bits (370), Expect = 3e-35 Identities = 67/122 (54%), Positives = 87/122 (71%), Gaps = 1/122 (0%) Frame = +2 Query: 182 RADNFYYPPEWSPKKG-GLNKFHGQHALRERARKLDQGILIIRFEMPFNVWCGGCSSMIG 358 + NFYYPP+++ K LN +HG HALRERA+K+DQGIL+IRFEMPFN+WC GC + +G Sbjct: 5 KGQNFYYPPDFNYKTHKSLNGYHGTHALRERAKKIDQGILVIRFEMPFNIWCLGCHNHVG 64 Query: 359 KGVRFNAEKKQVGNYYSTKIWSFSMKSPCCQHEIVIHTDPKNTEYVIVSGAQRKTEDFDV 538 GVR+NAEKK++G YY+T + F MK C + VI TDPKN +Y +V G R+ FD Sbjct: 65 MGVRYNAEKKKIGMYYTTPLHEFRMKCHLCDNYYVIRTDPKNFDYELVEGCSRQELRFDP 124 Query: 539 ED 544 D Sbjct: 125 TD 126
>CCD94_HUMAN (Q9BW85) Coiled-coil domain-containing protein 94| Length = 323 Score = 63.9 bits (154), Expect = 3e-10 Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 2/111 (1%) Frame = +2 Query: 191 NFYYPPEWSPKKGGLNKFHGQHALRERARKLDQGILIIRFEMPFNVWCGGCSSMIGKGVR 370 N YYPP++ P K K ++R PFN+ C C I KG + Sbjct: 8 NKYYPPDFDPSKIPKLKLPKDRQY------------VVRLMAPFNMRCKTCGEYIYKGKK 55 Query: 371 FNAEKKQVGN--YYSTKIWSFSMKSPCCQHEIVIHTDPKNTEYVIVSGAQR 517 FNA K+ V N Y I+ F +K C EI TDP+NT+Y + GA R Sbjct: 56 FNARKETVQNEVYLGLPIFRFYIKCTRCLAEITFKTDPENTDYTMEHGATR 106
>CCD94_MOUSE (Q9D6J3) Coiled-coil domain-containing protein 94| Length = 314 Score = 63.9 bits (154), Expect = 3e-10 Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 2/111 (1%) Frame = +2 Query: 191 NFYYPPEWSPKKGGLNKFHGQHALRERARKLDQGILIIRFEMPFNVWCGGCSSMIGKGVR 370 N YYPP++ P K K ++R PFN+ C C I KG + Sbjct: 8 NKYYPPDFDPSKIPKLKLPKDRQY------------VVRLMAPFNMRCKTCGEYIYKGKK 55 Query: 371 FNAEKKQVGN--YYSTKIWSFSMKSPCCQHEIVIHTDPKNTEYVIVSGAQR 517 FNA K+ V N Y I+ F +K C EI TDP+NT+Y + GA R Sbjct: 56 FNARKETVQNEAYLGLPIFRFYIKCTRCLAEITFKTDPENTDYTMEHGATR 106
>CWF16_SCHPO (Q9P7C5) Cell cycle control protein cwf16| Length = 270 Score = 63.5 bits (153), Expect = 4e-10 Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 1/113 (0%) Frame = +2 Query: 191 NFYYPPEWSPKKGGLNKFHGQHALRERARKLDQGILIIRFEMPFNVWCGGCSSMIGKGVR 370 N Y PP++ P K +++ + + G L +R PF++ C C I KG + Sbjct: 8 NKYIPPDYDPSIRPPKK-------KKKFQGPNGGKLTVRLMTPFSMRCHTCGEYIYKGKK 60 Query: 371 FNAEKKQVG-NYYSTKIWSFSMKSPCCQHEIVIHTDPKNTEYVIVSGAQRKTE 526 FNA K++ G Y+S I F ++ C EI TDPK+ +Y SGA R E Sbjct: 61 FNARKEKTGEKYFSIDILRFYIRCTRCAAEITFITDPKHADYAAESGASRNYE 113
>YKJ5_YEAST (P28320) 32.3 kDa protein in CWP1-MBR1 intergenic region| Length = 278 Score = 60.8 bits (146), Expect = 2e-09 Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 5/121 (4%) Frame = +2 Query: 170 LAAARADNFYYPPEWSPKKGGLNKFHGQHALRERARKL---DQGILIIRFEMPFNVWCGG 340 ++ +A N YYPP+++P + R+ A+KL ++ IR PF++ C Sbjct: 1 MSERKAINKYYPPDYNP-------LEAEKLSRKMAKKLKTMNKSHASIRLMTPFSMRCLE 53 Query: 341 CSSMIGKGVRFNAEKKQVGNYY--STKIWSFSMKSPCCQHEIVIHTDPKNTEYVIVSGAQ 514 C+ I K +FN +K+ + Y S KI+ ++ P C + I TDP N++YV+ G Sbjct: 54 CNEYIPKSRKFNGKKELLKEKYLDSIKIYRLTISCPRCANSIAFRTDPGNSDYVMEVGGV 113 Query: 515 R 517 R Sbjct: 114 R 114
>IDI_PHOPR (Q6LUX5) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) (IPP:DMAPP isomerase) Length = 180 Score = 33.5 bits (75), Expect = 0.41 Identities = 17/66 (25%), Positives = 34/66 (51%) Frame = +2 Query: 359 KGVRFNAEKKQVGNYYSTKIWSFSMKSPCCQHEIVIHTDPKNTEYVIVSGAQRKTEDFDV 538 +G+ F +++ +G Y+S +W+ + CC H P+ E + +G +R TE+ + Sbjct: 45 QGIEFLMQQRALGKYHSGGLWT----NTCCSH-------PRQGETLEQAGLRRLTEEMGI 93 Query: 539 EDAETL 556 E+L Sbjct: 94 VGLESL 99
>ARMX2_HUMAN (Q7L311) Armadillo repeat-containing X-linked protein 2 (Protein| ALEX2) (ARM protein lost in epithelial cancers on chromosome X 2) Length = 632 Score = 33.1 bits (74), Expect = 0.54 Identities = 20/61 (32%), Positives = 27/61 (44%) Frame = +3 Query: 96 TGASAPTLVAPLISSSSSPETTCXXXXXXXXXXXXXXXNGARRRVG*TSSTASMPSGSGR 275 TGA+APT A +S SP T GA + TS+T ++P G G+ Sbjct: 227 TGAAAPTGAAESPGTSGSPRTAVVPGTSAAKKATPGAHTGAIPKA--TSATGAVPKGGGK 284 Query: 276 G 278 G Sbjct: 285 G 285
>CAN3_PIG (P43368) Calpain-3 (EC 3.4.22.-) (Calpain L3) (Calpain p94)| (Calcium-activated neutral proteinase 3) (CANP 3) (Muscle-specific calcium-activated neutral protease 3) (nCL-1) Length = 821 Score = 31.2 bits (69), Expect = 2.1 Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Frame = +1 Query: 196 LLPARMEPEEGWAEQVPR--PACPQGAGEEAGPGHPDYK 306 ++ A M P G A QVPR P QG G EAG G+P K Sbjct: 4 VISASMAPRTG-ASQVPRTMPQAAQGKGTEAGVGNPGGK 41
>SYI_MYCGE (P47587) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 895 Score = 29.6 bits (65), Expect = 6.0 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = -2 Query: 397 SNLFLFSIKPYTLPYHGTASTTPDIERHLESYNQDALVQLPR 272 +NL +++ P+TLP + + PD + L YNQ V L + Sbjct: 225 ANLLVWTTTPWTLPTNQAIAIHPDFDYLLFEYNQQKFVILEK 266
>MAPE_HUMAN (P78395) Melanoma antigen preferentially expressed in tumors| (Preferentially expressed antigen of melanoma) (OPA-interacting protein 4) (OIP4) Length = 509 Score = 29.6 bits (65), Expect = 6.0 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%) Frame = -2 Query: 553 RLCIFNIKIFSLPLSSTDYNILSVLRVRMYDYLMLATW*FHTEA---PYLGRVVISNLFL 383 RLC +KIF++P+ + V + D + TW T A PYLG+++ L Sbjct: 207 RLCCKKLKIFAMPMQDIKMILKMVQLDSIEDLEVTCTWKLPTLAKFSPYLGQMINLRRLL 266 Query: 382 FS 377 S Sbjct: 267 LS 268
>LFTR_BRUSU (P0A4S8) Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6)| (L/F-transferase) (Leucyltransferase) (Phenyalanyltransferase) Length = 204 Score = 29.3 bits (64), Expect = 7.8 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = +2 Query: 218 PKKGGLNKFHGQHALRERARKLDQGILIIRFEMPFNVWCGGCSSMIGKGVR 370 P+K G+ G H R + + QGI IR + F GC+S G+ R Sbjct: 42 PEKRGVIPLDGFHIPRSLQKTIRQGIFEIRLDSNFAGVIEGCASGTGERAR 92
>LFTR_BRUME (P0A4S7) Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6)| (L/F-transferase) (Leucyltransferase) (Phenyalanyltransferase) Length = 204 Score = 29.3 bits (64), Expect = 7.8 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = +2 Query: 218 PKKGGLNKFHGQHALRERARKLDQGILIIRFEMPFNVWCGGCSSMIGKGVR 370 P+K G+ G H R + + QGI IR + F GC+S G+ R Sbjct: 42 PEKRGVIPLDGFHIPRSLQKTIRQGIFEIRLDSNFAGVIEGCASGTGERAR 92
>DSG1_CANFA (Q9GKQ8) Desmoglein-1 precursor (Desmosomal glycoprotein 1) (DG1)| (DGI) Length = 1054 Score = 29.3 bits (64), Expect = 7.8 Identities = 12/33 (36%), Positives = 15/33 (45%) Frame = +1 Query: 199 LPARMEPEEGWAEQVPRPACPQGAGEEAGPGHP 297 L +EP+ W + P CPQ E GHP Sbjct: 782 LGKEVEPDPSWPPESTEPICPQQGTEPIIGGHP 814
>OTOAN_HUMAN (Q7RTW8) Otoancorin precursor| Length = 1153 Score = 29.3 bits (64), Expect = 7.8 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -2 Query: 367 YTLPYHGTASTTPDIERHLESYNQDALVQLPRPLPEGML 251 Y LP H TA TT D+ L ++ D L + PE +L Sbjct: 749 YGLPQHWTAETTKDLGPFLVLFSGDELSSIATKFPEILL 787 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,926,954 Number of Sequences: 219361 Number of extensions: 1525425 Number of successful extensions: 4856 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4672 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4848 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4528412720 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
