ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart27d08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_465274.1| Oryza sativa (japonica cultivar-group), mRNA 398 e-108
2dbj|AK068494.1| Oryza sativa (japonica cultivar-group) cDNA clon... 391 e-105
3gb|AF498270.1| Haynaldia villosa clone kong36 mRNA 218 1e-53
4gb|AY111209.1| Zea mays CL10931_1 mRNA sequence 133 7e-28
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 115 2e-22
6dbj|AP004890.3| Oryza sativa (japonica cultivar-group) genomic D... 115 2e-22
7ref|NM_102370.2| Arabidopsis thaliana unknown protein AT1G25682 ... 88 4e-14
8gb|BT011673.1| Arabidopsis thaliana At1g25682 mRNA, complete cds 88 4e-14
9dbj|AK221692.1| Arabidopsis thaliana mRNA for hypothetical prote... 88 4e-14
10emb|BX813833.1|CNS0ADT1 Arabidopsis thaliana Full-length cDNA Co... 88 4e-14
11gb|AC146570.6| Medicago truncatula clone mth2-103j7, complete se... 68 3e-08
12emb|AJ566963.1|GHI566963 Gossypium hirsutum microsatellite DNA m... 52 0.002
13emb|CR956399.4| M.truncatula DNA sequence from clone MTH2-7L7 on... 52 0.002
14gb|AC084221.7|AC084221 Arabidopsis thaliana chromosome 1 BAC F14... 50 0.008
15gb|AY107525.1| Zea mays PCO115693 mRNA sequence 50 0.008
16gb|AC069223.15| Homo sapiens 3 BAC RP11-398O21 (Roswell Park Can... 48 0.031
17gb|AC068763.11| Homo sapiens 3 BAC RP11-133K20 (Roswell Park Can... 48 0.031
18gb|AC183831.2| Pan troglodytes BAC clone CH251-280E18 from chrom... 46 0.12
19gb|AC006329.5| Homo sapiens BAC clone RP11-132A1 from 7, complet... 46 0.12
20gb|CP000133.1| Rhizobium etli CFN 42, complete genome 44 0.48
21emb|BX005415.5| Zebrafish DNA sequence from clone DKEY-21I5 in l... 44 0.48
22emb|BX004981.4| Zebrafish DNA sequence from clone CH211-169J7 in... 44 0.48
23ref|XM_637845.1| Dictyostelium discoideum hypothetical protein (... 42 1.9
24ref|XM_634161.1| Dictyostelium discoideum hypothetical protein (... 42 1.9
25gb|AC184848.2| Pan troglodytes BAC clone CH251-277H16 from chrom... 42 1.9
26ref|XM_324143.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.9
27ref|XM_955320.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.9
28gb|AC092585.2| Homo sapiens BAC clone RP11-20L17 from 7, complet... 42 1.9
29emb|BX897677.1| Neurospora crassa DNA linkage group VI BAC clone... 42 1.9
30emb|BX571861.1| Photorhabdus luminescens subsp. laumondii TTO1 c... 42 1.9
31emb|BX571860.1| Photorhabdus luminescens subsp. laumondii TTO1 c... 42 1.9
32gb|AC117075.2| Dictyostelium discoideum chromosome 2 map 5201047... 42 1.9
33dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 42 1.9
34gb|AF007553.1|AF007553 Thermus aquaticus caldophilus mismatch re... 42 1.9
35gb|AE017221.1| Thermus thermophilus HB27, complete genome 42 1.9
36emb|AL713865.10| Mouse DNA sequence from clone RP23-451D4 on chr... 42 1.9
37dbj|D63810.1|TTHMUTS Thermus thermophilus mutS gene for MutS, co... 42 1.9
38gb|AC124998.10| Mus musculus chromosome 10, clone RP24-350B12, c... 40 7.6
39gb|AC149481.1| Populus trichocarpa clone Pop1-16J18, complete se... 40 7.6
40gb|AC149541.1| Populus trichocarpa clone Pop1-12C14, complete se... 40 7.6
41gb|AC123855.4| Mus musculus BAC clone RP23-328J17 from chromosom... 40 7.6
42gb|AC125206.3| Mus musculus BAC clone RP23-240G3 from 10, comple... 40 7.6
43emb|CR732323.2|CNS0GS08 Tetraodon nigroviridis full-length cDNA 40 7.6
44emb|CR678978.2|CNS0FMUM Tetraodon nigroviridis full-length cDNA 40 7.6
45emb|CR675628.2|CNS0FKAA Tetraodon nigroviridis full-length cDNA 40 7.6
46ref|XM_661548.1| Cryptosporidium hominis TU502 deoxyuridine 5'-t... 40 7.6
47ref|XM_793424.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 7.6
48emb|BX571864.1| Photorhabdus luminescens subsp. laumondii TTO1 c... 40 7.6
49dbj|AK017703.1| Mus musculus 8 days embryo whole body cDNA, RIKE... 40 7.6
50gb|AC158517.1| Mus musculus BAC clone RP24-114B19 from chromosom... 40 7.6
51emb|CR626877.10| Zebrafish DNA sequence from clone DKEYP-114F9 i... 40 7.6
52gb|BC059816.1| Mus musculus SEC63-like (S. cerevisiae), mRNA (cD... 40 7.6
53emb|AL672098.13| Mouse DNA sequence from clone RP23-322M6 on chr... 40 7.6
54emb|AL731779.12| Mouse DNA sequence from clone RP23-48D8 on chro... 40 7.6 
>ref|XM_465274.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1323

 Score =  398 bits (201), Expect = e-108
 Identities = 351/401 (87%)
 Strand = Plus / Plus

                                                                       
Query: 152 ggagacaacatgtcgacgcttgccgcggcgagggccgacaacttctactacccgcccgaa 211
           |||| ||| |||||| |||| |||||||| ||||| || ||||||||||||||||| |||
Sbjct: 140 ggaggcaagatgtcgtcgctcgccgcggcaagggcggataacttctactacccgccggaa 199

                                                                       
Query: 212 tggagcccgaagaagggtgggctgaacaagttccacggccagcatgccctcagggagcgg 271
           |||||||| |||||||||||||| ||||||||||| || || ||||| |||||||| |||
Sbjct: 200 tggagcccaaagaagggtgggctcaacaagttccatggacaacatgctctcagggaacgg 259

                                                                       
Query: 272 gcgaggaagctggaccagggcatcctgattataagattcgagatgcctttcaatgtctgg 331
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||
Sbjct: 260 gcgaggaagctggaccagggcatcctgattataagattcgagatgccattcaatatttgg 319

                                                                       
Query: 332 tgtggtggatgcagttccatgatagggaagggtgtaaggtttaatgctgaaaagaaacaa 391
           |||||||| ||||  ||||||||||  ||||| || |||||||| ||||| |||||||||
Sbjct: 320 tgtggtgggtgcaactccatgatagcaaagggagtgaggtttaacgctgagaagaaacaa 379

                                                                       
Query: 392 gttggaaattactactctaccaagatatggagcttcagtatgaaatcaccatgttgccag 451
           ||||| ||||| |||||||||||||||||||||||||  |||||||||||||| ||| | 
Sbjct: 380 gttgggaattattactctaccaagatatggagcttcaccatgaaatcaccatgctgcaaa 439

                                                                       
Query: 452 catgagatagtcatacatacggacccgaagaacactgagtatgttatagtcagtggagct 511
           || || ||||| ||||| || ||||| ||||| |||||||| || ||| | |||||||||
Sbjct: 440 caagaaatagttatacaaacagacccaaagaatactgagtacgtcataattagtggagct 499

                                                    
Query: 512 cagcggaagactgaagattttgatgttgaagatgcagagac 552
           || || ||||||||||||| |||||| || |||||||||||
Sbjct: 500 caacgaaagactgaagattatgatgtggaggatgcagagac 540
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>dbj|AK068494.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013156M22, full
           insert sequence
          Length = 1323

 Score =  391 bits (197), Expect = e-105
 Identities = 350/401 (87%)
 Strand = Plus / Plus

                                                                       
Query: 152 ggagacaacatgtcgacgcttgccgcggcgagggccgacaacttctactacccgcccgaa 211
           |||| ||| |||||| |||| |||||||| ||||| || ||||||||||||||||| |||
Sbjct: 140 ggaggcaagatgtcgtcgctcgccgcggcaagggcggataacttctactacccgccggaa 199

                                                                       
Query: 212 tggagcccgaagaagggtgggctgaacaagttccacggccagcatgccctcagggagcgg 271
           |||||||| |||||||||||||| ||||||||||| || || ||||| |||||||  |||
Sbjct: 200 tggagcccaaagaagggtgggctcaacaagttccatggacaacatgctctcaggggacgg 259

                                                                       
Query: 272 gcgaggaagctggaccagggcatcctgattataagattcgagatgcctttcaatgtctgg 331
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||
Sbjct: 260 gcgaggaagctggaccagggcatcctgattataagattcgagatgccattcaatatttgg 319

                                                                       
Query: 332 tgtggtggatgcagttccatgatagggaagggtgtaaggtttaatgctgaaaagaaacaa 391
           |||||||| ||||  ||||||||||  ||||| || |||||||| ||||| |||||||||
Sbjct: 320 tgtggtgggtgcaactccatgatagcaaagggagtgaggtttaacgctgagaagaaacaa 379

                                                                       
Query: 392 gttggaaattactactctaccaagatatggagcttcagtatgaaatcaccatgttgccag 451
           ||||| ||||| |||||||||||||||||||||||||  |||||||||||||| ||| | 
Sbjct: 380 gttgggaattattactctaccaagatatggagcttcaccatgaaatcaccatgctgcaaa 439

                                                                       
Query: 452 catgagatagtcatacatacggacccgaagaacactgagtatgttatagtcagtggagct 511
           || || ||||| ||||| || ||||| ||||| |||||||| || ||| | |||||||||
Sbjct: 440 caagaaatagttatacaaacagacccaaagaatactgagtacgtcataattagtggagct 499

                                                    
Query: 512 cagcggaagactgaagattttgatgttgaagatgcagagac 552
           || || ||||||||||||| |||||| || |||||||||||
Sbjct: 500 caacgaaagactgaagattatgatgtggaggatgcagagac 540
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>gb|AF498270.1| Haynaldia villosa clone kong36 mRNA
          Length = 1083

 Score =  218 bits (110), Expect = 1e-53
 Identities = 122/126 (96%)
 Strand = Plus / Plus

                                                                       
Query: 432 tgaaatcaccatgttgccagcatgagatagtcatacatacggacccgaagaacactgagt 491
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 15  tgaaatcaccatgttgccagcatgagatagtcatacatacggacccgaagaatactgagt 74

                                                                       
Query: 492 atgttatagtcagtggagctcagcggaagactgaagattttgatgttgaagatgcagaga 551
           |||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 75  atgttataatcagtggggctcagcggaagactgaagatttcgatgttgaagatgcagaga 134

                 
Query: 552 cgctcc 557
           ||||||
Sbjct: 135 cgctcc 140
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>gb|AY111209.1| Zea mays CL10931_1 mRNA sequence
          Length = 505

 Score =  133 bits (67), Expect = 7e-28
 Identities = 79/83 (95%)
 Strand = Plus / Minus

                                                                       
Query: 225 agggtgggctgaacaagttccacggccagcatgccctcagggagcgggcgaggaagctgg 284
           |||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| |
Sbjct: 257 agggtgggctgaacaagttccatggccagcatgcgctcagggagcgagcgaggaagctcg 198

                                  
Query: 285 accagggcatcctgattataaga 307
           |||||||||||||||||||||||
Sbjct: 197 accagggcatcctgattataaga 175
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  115 bits (58), Expect = 2e-22
 Identities = 76/82 (92%)
 Strand = Plus / Plus

                                                                            
Query: 225      agggtgggctgaacaagttccacggccagcatgccctcagggagcgggcgaggaagctgg 284
                |||||||||| ||||||||||| || || ||||| |||||||| ||||||||||||||||
Sbjct: 13006606 agggtgggctcaacaagttccatggacaacatgctctcagggaacgggcgaggaagctgg 13006665

                                      
Query: 285      accagggcatcctgattataag 306
                ||||||||||||||||||||||
Sbjct: 13006666 accagggcatcctgattataag 13006687



 Score =  111 bits (56), Expect = 2e-21
 Identities = 101/116 (87%)
 Strand = Plus / Plus

                                                                            
Query: 305      agattcgagatgcctttcaatgtctggtgtggtggatgcagttccatgatagggaagggt 364
                |||||||||||||| |||||| | ||||||||||| ||||  ||||||||||  ||||| 
Sbjct: 13007962 agattcgagatgccattcaatatttggtgtggtgggtgcaactccatgatagcaaaggga 13008021

                                                                        
Query: 365      gtaaggtttaatgctgaaaagaaacaagttggaaattactactctaccaagatatg 420
                || |||||||| ||||| |||||||||||||| ||||| |||||||||||| ||||
Sbjct: 13008022 gtgaggtttaacgctgagaagaaacaagttgggaattattactctaccaaggtatg 13008077



 Score =  109 bits (55), Expect = 1e-20
 Identities = 118/139 (84%)
 Strand = Plus / Plus

                                                                            
Query: 414      agatatggagcttcagtatgaaatcaccatgttgccagcatgagatagtcatacatacgg 473
                |||||||||||||||  |||||||||||||| ||| | || || ||||| ||||| || |
Sbjct: 13011042 agatatggagcttcaccatgaaatcaccatgctgcaaacaagaaatagttatacaaacag 13011101

                                                                            
Query: 474      acccgaagaacactgagtatgttatagtcagtggagctcagcggaagactgaagattttg 533
                |||| ||||| |||||||| || ||| | ||||||||||| || ||||||||||||| ||
Sbjct: 13011102 acccaaagaatactgagtacgtcataattagtggagctcaacgaaagactgaagattatg 13011161

                                   
Query: 534      atgttgaagatgcagagac 552
                |||| || |||||||||||
Sbjct: 13011162 atgtggaggatgcagagac 13011180



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                            
Query: 163      gtcgacgcttgccgcggcgagggccgacaacttctactacccgcccgaatggagcccgaa 222
                |||| |||| |||||||| ||||| || ||||||||||||||||| ||||||||||| ||
Sbjct: 13006438 gtcgtcgctcgccgcggcaagggcggataacttctactacccgccggaatggagcccaaa 13006497

                     
Query: 223      gaagg 227
                |||||
Sbjct: 13006498 gaagg 13006502
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>dbj|AP004890.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0688H12
          Length = 139279

 Score =  115 bits (58), Expect = 2e-22
 Identities = 76/82 (92%)
 Strand = Plus / Plus

                                                                          
Query: 225    agggtgggctgaacaagttccacggccagcatgccctcagggagcgggcgaggaagctgg 284
              |||||||||| ||||||||||| || || ||||| |||||||| ||||||||||||||||
Sbjct: 116249 agggtgggctcaacaagttccatggacaacatgctctcagggaacgggcgaggaagctgg 116308

                                    
Query: 285    accagggcatcctgattataag 306
              ||||||||||||||||||||||
Sbjct: 116309 accagggcatcctgattataag 116330



 Score =  111 bits (56), Expect = 2e-21
 Identities = 101/116 (87%)
 Strand = Plus / Plus

                                                                          
Query: 305    agattcgagatgcctttcaatgtctggtgtggtggatgcagttccatgatagggaagggt 364
              |||||||||||||| |||||| | ||||||||||| ||||  ||||||||||  ||||| 
Sbjct: 117605 agattcgagatgccattcaatatttggtgtggtgggtgcaactccatgatagcaaaggga 117664

                                                                      
Query: 365    gtaaggtttaatgctgaaaagaaacaagttggaaattactactctaccaagatatg 420
              || |||||||| ||||| |||||||||||||| ||||| |||||||||||| ||||
Sbjct: 117665 gtgaggtttaacgctgagaagaaacaagttgggaattattactctaccaaggtatg 117720



 Score =  109 bits (55), Expect = 1e-20
 Identities = 118/139 (84%)
 Strand = Plus / Plus

                                                                          
Query: 414    agatatggagcttcagtatgaaatcaccatgttgccagcatgagatagtcatacatacgg 473
              |||||||||||||||  |||||||||||||| ||| | || || ||||| ||||| || |
Sbjct: 120685 agatatggagcttcaccatgaaatcaccatgctgcaaacaagaaatagttatacaaacag 120744

                                                                          
Query: 474    acccgaagaacactgagtatgttatagtcagtggagctcagcggaagactgaagattttg 533
              |||| ||||| |||||||| || ||| | ||||||||||| || ||||||||||||| ||
Sbjct: 120745 acccaaagaatactgagtacgtcataattagtggagctcaacgaaagactgaagattatg 120804

                                 
Query: 534    atgttgaagatgcagagac 552
              |||| || |||||||||||
Sbjct: 120805 atgtggaggatgcagagac 120823



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                          
Query: 163    gtcgacgcttgccgcggcgagggccgacaacttctactacccgcccgaatggagcccgaa 222
              |||| |||| |||||||| ||||| || ||||||||||||||||| ||||||||||| ||
Sbjct: 116081 gtcgtcgctcgccgcggcaagggcggataacttctactacccgccggaatggagcccaaa 116140

                   
Query: 223    gaagg 227
              |||||
Sbjct: 116141 gaagg 116145
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>ref|NM_102370.2| Arabidopsis thaliana unknown protein AT1G25682 mRNA, complete cds
          Length = 1206

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 134/164 (81%)
 Strand = Plus / Plus

                                                                       
Query: 302 ataagattcgagatgcctttcaatgtctggtgtggtggatgcagttccatgatagggaag 361
           ||||| ||||||||||| |  ||| | ||||||||||| || ||||| ||||| |  |||
Sbjct: 204 ataaggttcgagatgccctataatatatggtgtggtggctgtagttctatgatcgccaag 263

                                                                       
Query: 362 ggtgtaaggtttaatgctgaaaagaaacaagttggaaattactactctaccaagatatgg 421
           |||||  | |||||||| |||||||| |||||||| || || || ||||| |||||||||
Sbjct: 264 ggtgttcgatttaatgcagaaaagaagcaagttggcaactattattctacaaagatatgg 323

                                                       
Query: 422 agcttcagtatgaaatcaccatgttgccagcatgagatagtcat 465
           |||||    |||||||||||||| ||  | ||||||||||||||
Sbjct: 324 agctttgcaatgaaatcaccatgctgtaaacatgagatagtcat 367
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>gb|BT011673.1| Arabidopsis thaliana At1g25682 mRNA, complete cds
          Length = 933

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 134/164 (81%)
 Strand = Plus / Plus

                                                                       
Query: 302 ataagattcgagatgcctttcaatgtctggtgtggtggatgcagttccatgatagggaag 361
           ||||| ||||||||||| |  ||| | ||||||||||| || ||||| ||||| |  |||
Sbjct: 142 ataaggttcgagatgccctataatatatggtgtggtggctgtagttctatgatcgccaag 201

                                                                       
Query: 362 ggtgtaaggtttaatgctgaaaagaaacaagttggaaattactactctaccaagatatgg 421
           |||||  | |||||||| |||||||| |||||||| || || || ||||| |||||||||
Sbjct: 202 ggtgttcgatttaatgcagaaaagaagcaagttggcaactattattctacaaagatatgg 261

                                                       
Query: 422 agcttcagtatgaaatcaccatgttgccagcatgagatagtcat 465
           |||||    |||||||||||||| ||  | ||||||||||||||
Sbjct: 262 agctttgcaatgaaatcaccatgctgtaaacatgagatagtcat 305
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>dbj|AK221692.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
           clone: RAFL15-18-P10
          Length = 1164

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 134/164 (81%)
 Strand = Plus / Plus

                                                                       
Query: 302 ataagattcgagatgcctttcaatgtctggtgtggtggatgcagttccatgatagggaag 361
           ||||| ||||||||||| |  ||| | ||||||||||| || ||||| ||||| |  |||
Sbjct: 227 ataaggttcgagatgccctataatatatggtgtggtggctgtagttctatgatcgccaag 286

                                                                       
Query: 362 ggtgtaaggtttaatgctgaaaagaaacaagttggaaattactactctaccaagatatgg 421
           |||||  | |||||||| |||||||| |||||||| || || || ||||| |||||||||
Sbjct: 287 ggtgttcgatttaatgcagaaaagaagcaagttggcaactattattctacaaagatatgg 346

                                                       
Query: 422 agcttcagtatgaaatcaccatgttgccagcatgagatagtcat 465
           |||||    |||||||||||||| ||  | ||||||||||||||
Sbjct: 347 agctttgcaatgaaatcaccatgctgtaaacatgagatagtcat 390
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>emb|BX813833.1|CNS0ADT1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB41ZF06 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1060

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 134/164 (81%)
 Strand = Plus / Plus

                                                                       
Query: 302 ataagattcgagatgcctttcaatgtctggtgtggtggatgcagttccatgatagggaag 361
           ||||| ||||||||||| |  ||| | ||||||||||| || ||||| ||||| |  |||
Sbjct: 204 ataaggttcgagatgccctataatatatggtgtggtggctgtagttctatgatcgccaag 263

                                                                       
Query: 362 ggtgtaaggtttaatgctgaaaagaaacaagttggaaattactactctaccaagatatgg 421
           |||||  | |||||||| |||||||| |||||||| || || || ||||| |||||||||
Sbjct: 264 ggtgttcgatttaatgcagaaaagaagcaagttggcaactattattctacaaagatatgg 323

                                                       
Query: 422 agcttcagtatgaaatcaccatgttgccagcatgagatagtcat 465
           |||||    |||||||||||||| ||  | ||||||||||||||
Sbjct: 324 agctttgcaatgaaatcaccatgctgtaaacatgagatagtcat 367
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>gb|AC146570.6| Medicago truncatula clone mth2-103j7, complete sequence
          Length = 122623

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 91/110 (82%)
 Strand = Plus / Minus

                                                                         
Query: 311   gagatgcctttcaatgtctggtgtggtggatgcagttccatgatagggaagggtgtaagg 370
             |||||||||| |||| | ||||| || ||||||| ||| ||||| |  ||||||||  ||
Sbjct: 43769 gagatgccttacaatatatggtgcggaggatgcaattctatgattgcaaagggtgtccgg 43710

                                                               
Query: 371   tttaatgctgaaaagaaacaagttggaaattactactctaccaagatatg 420
             || ||||| || ||||| |||||||| |||||||||||||| ||| ||||
Sbjct: 43709 ttcaatgcagagaagaagcaagttgggaattactactctacaaaggtatg 43660
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>emb|AJ566963.1|GHI566963 Gossypium hirsutum microsatellite DNA mGhCIR014, clone CIR014
          Length = 392

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 503 agtggagctcagcggaagactgaagattttgatgttgaagatgcagagac 552
           ||||| ||||||||||| |||||||  ||||||||||| || ||||||||
Sbjct: 388 agtggggctcagcggaaaactgaagtgtttgatgttgaggacgcagagac 339
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>emb|CR956399.4| M.truncatula DNA sequence from clone MTH2-7L7 on chromosome 3, complete
             sequence
          Length = 142604

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                         
Query: 359   aagggtgtaaggtttaatgctgaaaagaaacaagttggaaattactactctaccaagata 418
             ||||||||  |||| ||||| || ||||| |||||||| |||||||||||||| ||| ||
Sbjct: 13232 aagggtgtccggttcaatgcagagaagaagcaagttgggaattactactctacaaaggta 13291

               
Query: 419   tg 420
             ||
Sbjct: 13292 tg 13293
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>gb|AC084221.7|AC084221 Arabidopsis thaliana chromosome 1 BAC F14G11 genomic sequence, complete
             sequence
          Length = 46009

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 73/89 (82%)
 Strand = Plus / Minus

                                                                         
Query: 308   ttcgagatgcctttcaatgtctggtgtggtggatgcagttccatgatagggaagggtgta 367
             ||||||||||| |  ||| | ||||||||||| || ||||| ||||| |  |||||||| 
Sbjct: 13013 ttcgagatgccctataatatatggtgtggtggctgtagttctatgatcgccaagggtgtt 12954

                                          
Query: 368   aggtttaatgctgaaaagaaacaagttgg 396
              | |||||||| |||||||| ||||||||
Sbjct: 12953 cgatttaatgcagaaaagaagcaagttgg 12925



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                 
Query: 414   agatatggagcttcagtatgaaatcaccatgttgccagcatgagatagtcat 465
             |||||||||||||    |||||||||||||| ||  | ||||||||||||||
Sbjct: 12776 agatatggagctttgcaatgaaatcaccatgctgtaaacatgagatagtcat 12725
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>gb|AY107525.1| Zea mays PCO115693 mRNA sequence
          Length = 726

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 524 gaagattttgatgttgaagatgcagagac 552
           ||||||||||||||||| |||||||||||
Sbjct: 12  gaagattttgatgttgaggatgcagagac 40
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>gb|AC069223.15| Homo sapiens 3 BAC RP11-398O21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 179767

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 312   agatgcctttcaatgtctggtgtggtgg 339
             ||||| ||||||||||||||||||||||
Sbjct: 86819 agatgtctttcaatgtctggtgtggtgg 86846
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>gb|AC068763.11| Homo sapiens 3 BAC RP11-133K20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 180638

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 312   agatgcctttcaatgtctggtgtggtgg 339
             ||||| ||||||||||||||||||||||
Sbjct: 81596 agatgtctttcaatgtctggtgtggtgg 81569
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>gb|AC183831.2| Pan troglodytes BAC clone CH251-280E18 from chromosome 7, complete
              sequence
          Length = 169210

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 276    ggaagctggaccagggcatcctg 298
              |||||||||||||||||||||||
Sbjct: 164845 ggaagctggaccagggcatcctg 164823
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>gb|AC006329.5| Homo sapiens BAC clone RP11-132A1 from 7, complete sequence
          Length = 145253

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 276   ggaagctggaccagggcatcctg 298
             |||||||||||||||||||||||
Sbjct: 52092 ggaagctggaccagggcatcctg 52114
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 118     tcgtcgcgccgctgatatcctc 139
               ||||||||||||||||||||||
Sbjct: 2955994 tcgtcgcgccgctgatatcctc 2956015
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>emb|BX005415.5| Zebrafish DNA sequence from clone DKEY-21I5 in linkage group 5, complete
              sequence
          Length = 243510

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 10     gaagagtcaaaaacaaaacaca 31
              ||||||||||||||||||||||
Sbjct: 162302 gaagagtcaaaaacaaaacaca 162323
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>emb|BX004981.4| Zebrafish DNA sequence from clone CH211-169J7 in linkage group 7,
              complete sequence
          Length = 162525

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 10     gaagagtcaaaaacaaaacaca 31
              ||||||||||||||||||||||
Sbjct: 113702 gaagagtcaaaaacaaaacaca 113723
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>ref|XM_637845.1| Dictyostelium discoideum hypothetical protein (DDB0217899), partial
           mRNA
          Length = 1077

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 527 gattttgatgttgaagatgca 547
           |||||||||||||||||||||
Sbjct: 379 gattttgatgttgaagatgca 399
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>ref|XM_634161.1| Dictyostelium discoideum hypothetical protein (DDB0185375), partial
           mRNA
          Length = 1455

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 527 gattttgatgttgaagatgca 547
           |||||||||||||||||||||
Sbjct: 757 gattttgatgttgaagatgca 777
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>gb|AC184848.2| Pan troglodytes BAC clone CH251-277H16 from chromosome 7, complete
            sequence
          Length = 155781

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 276  ggaagctggaccagggcatcc 296
            |||||||||||||||||||||
Sbjct: 5665 ggaagctggaccagggcatcc 5685
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>ref|XM_324143.1| Neurospora crassa OR74A hypothetical protein (NCU04787.1) partial
           mRNA
          Length = 1911

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 135 tcctcgtcctcgtcgccggag 155
           |||||||||||||||||||||
Sbjct: 833 tcctcgtcctcgtcgccggag 813
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>ref|XM_955320.1| Neurospora crassa OR74A hypothetical protein (NCU04787.1) partial
           mRNA
          Length = 1911

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 135 tcctcgtcctcgtcgccggag 155
           |||||||||||||||||||||
Sbjct: 833 tcctcgtcctcgtcgccggag 813
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>gb|AC092585.2| Homo sapiens BAC clone RP11-20L17 from 7, complete sequence
          Length = 137446

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 276    ggaagctggaccagggcatcc 296
              |||||||||||||||||||||
Sbjct: 121446 ggaagctggaccagggcatcc 121466
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>emb|BX897677.1| Neurospora crassa DNA linkage group VI BAC clone B15B10
          Length = 77986

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 135  tcctcgtcctcgtcgccggag 155
            |||||||||||||||||||||
Sbjct: 1803 tcctcgtcctcgtcgccggag 1783
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>emb|BX571861.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
              3/17
          Length = 342905

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 529    ttttgatgttgaagatgcagagacg 553
              |||||||||||||| ||||||||||
Sbjct: 256823 ttttgatgttgaaggtgcagagacg 256799



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 529    ttttgatgttgaagatgcagagacg 553
              |||||||||||||| ||||||||||
Sbjct: 251813 ttttgatgttgaaggtgcagagacg 251789
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>emb|BX571860.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
              2/17
          Length = 349287

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 529    ttttgatgttgaagatgcagagacg 553
              |||||||||||||| ||||||||||
Sbjct: 149845 ttttgatgttgaaggtgcagagacg 149869



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 529    ttttgatgttgaagatgcagagacg 553
              |||||||||||||| ||||||||||
Sbjct: 148662 ttttgatgttgaaggtgcagagacg 148686
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>gb|AC117075.2| Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4,
              complete sequence
          Length = 254733

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 527    gattttgatgttgaagatgca 547
              |||||||||||||||||||||
Sbjct: 175543 gattttgatgttgaagatgca 175523
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 256     tgccctcagggagcgggcgaggaag 280
               |||||| ||||||||||||||||||
Sbjct: 1262710 tgcccttagggagcgggcgaggaag 1262686
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>gb|AF007553.1|AF007553 Thermus aquaticus caldophilus mismatch repair protein (mutS) gene,
            complete cds
          Length = 2787

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 256  tgccctcagggagcgggcgaggaag 280
            |||||| ||||||||||||||||||
Sbjct: 1677 tgcccttagggagcgggcgaggaag 1701
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 256    tgccctcagggagcgggcgaggaag 280
              |||||| ||||||||||||||||||
Sbjct: 939972 tgcccttagggagcgggcgaggaag 939948
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>emb|AL713865.10| Mouse DNA sequence from clone RP23-451D4 on chromosome 4, complete
              sequence
          Length = 172962

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 369    ggtttaatgctgaaaagaaac 389
              |||||||||||||||||||||
Sbjct: 149019 ggtttaatgctgaaaagaaac 148999
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>dbj|D63810.1|TTHMUTS Thermus thermophilus mutS gene for MutS, complete cds
          Length = 3283

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 256  tgccctcagggagcgggcgaggaag 280
            |||||| ||||||||||||||||||
Sbjct: 2176 tgcccttagggagcgggcgaggaag 2200
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>gb|AC124998.10| Mus musculus chromosome 10, clone RP24-350B12, complete sequence
          Length = 185801

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    tcaaaaacaaaacacaaatc 35
             ||||||||||||||||||||
Sbjct: 10022 tcaaaaacaaaacacaaatc 10041
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>gb|AC149481.1| Populus trichocarpa clone Pop1-16J18, complete sequence
          Length = 120131

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 83/104 (79%)
 Strand = Plus / Plus

                                                                         
Query: 308   ttcgagatgcctttcaatgtctggtgtggtggatgcagttccatgatagggaagggtgta 367
             ||||| ||||| |||||| | ||||||||||| |||| ||| ||||| |  |||||||| 
Sbjct: 64061 ttcgaaatgcccttcaatatatggtgtggtggttgcaattctatgattgcaaagggtgtt 64120

                                                         
Query: 368   aggtttaatgctgaaaagaaacaagttggaaattactactctac 411
              | || ||||| || || || ||||| |||||||| || |||||
Sbjct: 64121 cgtttcaatgcagagaaaaagcaagtgggaaattattattctac 64164
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>gb|AC149541.1| Populus trichocarpa clone Pop1-12C14, complete sequence
          Length = 88772

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 83/104 (79%)
 Strand = Plus / Plus

                                                                         
Query: 308   ttcgagatgcctttcaatgtctggtgtggtggatgcagttccatgatagggaagggtgta 367
             ||||| ||||| |||||| | ||||||||||| |||| ||| ||||| |  |||||||| 
Sbjct: 65928 ttcgaaatgcccttcaatatatggtgtggtggttgcaattctatgattgcaaagggtgtt 65987

                                                         
Query: 368   aggtttaatgctgaaaagaaacaagttggaaattactactctac 411
              | || ||||| || || || ||||| |||||||| || |||||
Sbjct: 65988 cgtttcaatgcagagaaaaagcaagtgggaaattattattctac 66031
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>gb|AC123855.4| Mus musculus BAC clone RP23-328J17 from chromosome 12, complete sequence
          Length = 205684

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 522    ctgaagattttgatgttgaa 541
              ||||||||||||||||||||
Sbjct: 181035 ctgaagattttgatgttgaa 181016
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>gb|AC125206.3| Mus musculus BAC clone RP23-240G3 from 10, complete sequence
          Length = 184252

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    tcaaaaacaaaacacaaatc 35
             ||||||||||||||||||||
Sbjct: 24384 tcaaaaacaaaacacaaatc 24365
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>emb|CR732323.2|CNS0GS08 Tetraodon nigroviridis full-length cDNA
          Length = 1410

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 8    aagaagagtcaaaaacaaaa 27
            ||||||||||||||||||||
Sbjct: 1325 aagaagagtcaaaaacaaaa 1306
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>emb|CR678978.2|CNS0FMUM Tetraodon nigroviridis full-length cDNA
          Length = 967

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 8   aagaagagtcaaaaacaaaa 27
           ||||||||||||||||||||
Sbjct: 895 aagaagagtcaaaaacaaaa 876
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>emb|CR675628.2|CNS0FKAA Tetraodon nigroviridis full-length cDNA
          Length = 973

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 8   aagaagagtcaaaaacaaaa 27
           ||||||||||||||||||||
Sbjct: 929 aagaagagtcaaaaacaaaa 910
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>ref|XM_661548.1| Cryptosporidium hominis TU502 deoxyuridine 5'-triphosphate
           nucleotidohydrolase (Chro.70577) partial mRNA
          Length = 531

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 381 aaaagaaacaagttggaaat 400
           ||||||||||||||||||||
Sbjct: 363 aaaagaaacaagttggaaat 344
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>ref|XM_793424.1| PREDICTED: Strongylocentrotus purpuratus similar to Glutamate
           receptor, ionotropic kainate 2 precursor (Glutamate
           receptor 6) (GluR-6) (GluR6) (LOC593970), mRNA
          Length = 579

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 135 tcctcgtcctcgtcgccgga 154
           ||||||||||||||||||||
Sbjct: 446 tcctcgtcctcgtcgccgga 465
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>emb|BX571864.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
             6/17
          Length = 349071

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 529   ttttgatgttgaagatgcagagac 552
             |||||||||||||| |||||||||
Sbjct: 52290 ttttgatgttgaaggtgcagagac 52313
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>dbj|AK017703.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:5730478J10
           product:unclassifiable, full insert sequence
          Length = 1939

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 16  tcaaaaacaaaacacaaatc 35
           ||||||||||||||||||||
Sbjct: 873 tcaaaaacaaaacacaaatc 854
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>gb|AC158517.1| Mus musculus BAC clone RP24-114B19 from chromosome 12, complete
             sequence
          Length = 168486

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 522   ctgaagattttgatgttgaa 541
             ||||||||||||||||||||
Sbjct: 99669 ctgaagattttgatgttgaa 99688
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>emb|CR626877.10| Zebrafish DNA sequence from clone DKEYP-114F9 in linkage group 19,
              complete sequence
          Length = 173824

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     agtcaaaaacaaaacacaaa 33
              ||||||||||||||||||||
Sbjct: 126525 agtcaaaaacaaaacacaaa 126544
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>gb|BC059816.1| Mus musculus SEC63-like (S. cerevisiae), mRNA (cDNA clone
            IMAGE:6413001), containing frame-shift errors
          Length = 6047

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 16   tcaaaaacaaaacacaaatc 35
            ||||||||||||||||||||
Sbjct: 4961 tcaaaaacaaaacacaaatc 4942
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>emb|AL672098.13| Mouse DNA sequence from clone RP23-322M6 on chromosome X, complete
            sequence
          Length = 191655

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 18   aaaaacaaaacacaaatctc 37
            ||||||||||||||||||||
Sbjct: 3056 aaaaacaaaacacaaatctc 3037
to top
>emb|AL731779.12| Mouse DNA sequence from clone RP23-48D8 on chromosome 2, complete
             sequence
          Length = 168889

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     tgcaagaagagtcaaaaaca 24
             ||||||||||||||||||||
Sbjct: 44093 tgcaagaagagtcaaaaaca 44112


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,175,378
Number of Sequences: 3902068
Number of extensions: 6175378
Number of successful extensions: 144170
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 143889
Number of HSP's gapped (non-prelim): 277
length of query: 557
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 534
effective length of database: 17,143,297,704
effective search space: 9154520973936
effective search space used: 9154520973936
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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