ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart27d07 |
|---|---|
| Clone Library Name | barley_pub |
>PP1RA_MOUSE (Q80W00) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (MHC class I region proline-rich protein CAT53) Length = 888 Score = 35.0 bits (79), Expect = 0.13 Identities = 23/60 (38%), Positives = 24/60 (40%), Gaps = 5/60 (8%) Frame = +2 Query: 86 SGGHGDGEGQIH---RPLRRRKVPEHPGRQLGSPPQHDQSRRQGKQGGGL--HVEGALHG 250 SGGH EG H R VP H G PP H+ G GGG H G HG Sbjct: 792 SGGHRSHEGPGHGGPHGHRPHDVPSHRGHDHRGPPPHEHRGHDGHGGGGHRGHDGGHSHG 851 Score = 28.9 bits (63), Expect = 9.0 Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 3/74 (4%) Frame = +2 Query: 89 GGHGDGEGQIHRPLRRRKVPEHPGRQLGSPPQ-HD-QSRRQGKQGGGLHVEGALHG-PKG 259 GGH EG + + PG +GS + HD G GG EG HG P G Sbjct: 749 GGHRPHEGPGGSMGSGHRSHDGPGGNMGSGHRSHDGPGGNMGGSGGHRSHEGPGHGGPHG 808 Query: 260 HALLDCPRERHAQH 301 H D P R H Sbjct: 809 HRPHDVPSHRGHDH 822
>PP1RA_RAT (O55000) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (Phosphatase 1 nuclear targeting subunit) (PNUTS protein) (MHC class I region proline-rich protein CAT53) Length = 872 Score = 34.3 bits (77), Expect = 0.21 Identities = 22/55 (40%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Frame = +2 Query: 92 GHGDGEGQIHRPLRRRKVPEHPGRQLGSPPQHDQSRRQGKQGGGL--HVEGALHG 250 GHG G HRP VP H G PP H+ G GGG H G HG Sbjct: 786 GHGGPHG--HRP---HDVPSHRGHDHRGPPPHEHRGHDGHGGGGHRGHDGGHSHG 835
>FMO1_CANFA (Q95LA2) Dimethylaniline monooxygenase [N-oxide-forming] 1 (EC| 1.14.13.8) (Hepatic flavin-containing monooxygenase 1) (FMO 1) (Dimethylaniline oxidase 1) Length = 531 Score = 32.0 bits (71), Expect = 1.1 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Frame = +3 Query: 309 IIDERGSLSVSSPVPGRLA-SLLKSLNKLPPRVAMTGDVLRMKETK 443 +I GS+ + R A +LK +NKLPP+ AMT +V KE K Sbjct: 370 LIKPLGSMIPTGETQARWAVRVLKGINKLPPQSAMTEEVNARKENK 415
>CFA2_MYCTU (P0A5P0) Cyclopropane-fatty-acyl-phospholipid synthase 2 (EC| 2.1.1.79) (Cyclopropane fatty acid synthase) (CFA synthase) (Cyclopropane mycolic acid synthase 2) Length = 302 Score = 31.6 bits (70), Expect = 1.4 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%) Frame = -1 Query: 341 GHRERTPLIDYNVNVVHVVLGDNQVGH--ALLDHVVHPRR 228 G R + +Y+VNV+ + L +NQ H A+ D V PRR Sbjct: 84 GSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRR 123
>CFA2_MYCBO (P0A5P1) Cyclopropane-fatty-acyl-phospholipid synthase 2 (EC| 2.1.1.79) (Cyclopropane fatty acid synthase) (CFA synthase) (Cyclopropane mycolic acid synthase 2) Length = 302 Score = 31.6 bits (70), Expect = 1.4 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%) Frame = -1 Query: 341 GHRERTPLIDYNVNVVHVVLGDNQVGH--ALLDHVVHPRR 228 G R + +Y+VNV+ + L +NQ H A+ D V PRR Sbjct: 84 GSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRR 123
>TRUB_DECAR (Q47D96) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA| pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) Length = 299 Score = 31.2 bits (69), Expect = 1.8 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 2/67 (2%) Frame = -2 Query: 466 RLSAITGTFVSFMRRTSPVIAT--RGGNLLSDLSKLARRPGTGLDTEREPRSSIIMLMLC 293 ++S + FV +++ P+ + R G L +L++ G++ EREPR+ I + C Sbjct: 106 QVSEVLPRFVGDIQQIPPMHSALKRNGRPLYELAR------QGIEVEREPRAVTIFAIDC 159 Query: 292 MSFSGTI 272 + FSG + Sbjct: 160 LDFSGDL 166
>LEU1_RHIME (Q9X7L2) 2-isopropylmalate synthase (EC 2.3.3.13)| (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase) Length = 558 Score = 31.2 bits (69), Expect = 1.8 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = -1 Query: 260 ALLDHVVHPRRVNLPLASLGVGFDRVEVGFPTGAQ 156 AL+D + H R+ + L +GF +E+GFP+ +Q Sbjct: 43 ALVDPMGHDRKARMFHLLLDMGFKEIEIGFPSASQ 77
>LEU1_RHILO (Q98HN3) 2-isopropylmalate synthase (EC 2.3.3.13)| (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase) Length = 558 Score = 31.2 bits (69), Expect = 1.8 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = -1 Query: 260 ALLDHVVHPRRVNLPLASLGVGFDRVEVGFPTGAQ 156 AL+D + H R+ + L +GF +E+GFP+ +Q Sbjct: 43 ALIDPMGHERKARMFGLLLDMGFKEIEIGFPSASQ 77
>AROA_PYRAB (Q9V1H1) Probable 3-phosphoshikimate 1-carboxyvinyltransferase (EC| 2.5.1.19) (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) Length = 410 Score = 30.8 bits (68), Expect = 2.4 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%) Frame = +3 Query: 249 VQKGMPYLIVPENDMHNINIIIDERGSLSVSSPVPGRLASLLKSLNKLPPRVAMTGDVLR 428 V+ G Y++V N+M IN+ L P+ LAS + + +TG LR Sbjct: 271 VKVGRKYVVVERNEMKPINVDCSNFPDL---FPILAVLASYAEG------KSVITGRQLR 321 Query: 429 MKET-KVPVIAESLKKAILK 485 +KE+ +V +A +L+KA +K Sbjct: 322 LKESDRVKAVAVNLRKAGIK 341
>PPRB_MOUSE (Q925J9) Peroxisome proliferator-activated receptor-binding protein| (PBP) (PPAR-binding protein) (Thyroid hormone receptor-associated protein complex 220 kDa component) (Trap220) (Thyroid receptor-interacting protein 2) (TRIP-2) Length = 1575 Score = 30.8 bits (68), Expect = 2.4 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%) Frame = +2 Query: 17 TRSPLAAPLRSPKHFLEQLVRARSG---GHGDGEGQIHRPLRRRKVPEHPGRQLGSPPQH 187 ++SPL K ++ V+ +G G G G +P +R + P + G+ PP+ Sbjct: 953 SQSPLLTTGELGKEKTQKRVKEGNGTGASSGSGPGSDSKPGKRSRTPSNDGKSKDKPPKR 1012 Query: 188 DQSRRQGK 211 ++ +GK Sbjct: 1013 KKADTEGK 1020
>RNF5_CAEEL (Q09463) RING finger protein 5| Length = 235 Score = 30.8 bits (68), Expect = 2.4 Identities = 14/35 (40%), Positives = 15/35 (42%) Frame = +2 Query: 206 GKQGGGLHVEGALHGPKGHALLDCPRERHAQH*HY 310 G G H G HGP+GH P R AQ Y Sbjct: 182 GNDGTHAHTHGHTHGPRGHGESAAPGSRMAQEEEY 216
>MBB1A_HUMAN (Q9BQG0) Myb-binding protein 1A| Length = 1328 Score = 30.4 bits (67), Expect = 3.1 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 11/93 (11%) Frame = +3 Query: 249 VQKGMPYLIVPENDMHNINIIIDERGSLSV----SSPVPGRLASLLKSLNKLPPR-VAMT 413 V K I+PE ++NII+ L + VP +L L+ S+N V Sbjct: 188 VSKATLQEILPEVLKADLNIILSSPEQLELFLLAQQKVPSKLKKLVGSVNLFSDENVPRL 247 Query: 414 GDVLRM------KETKVPVIAESLKKAILKEHK 494 +VL+M K+ K+P IA L + LKE K Sbjct: 248 VNVLKMAASSVKKDRKLPAIALDLLRLALKEDK 280
>PP1RA_PANTR (Q7YR38) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (MHC class I region proline-rich protein CAT53) (Protein FB19) Length = 940 Score = 30.4 bits (67), Expect = 3.1 Identities = 20/52 (38%), Positives = 21/52 (40%), Gaps = 4/52 (7%) Frame = +2 Query: 86 SGGHGDGEGQIH---RPLRRRKVPEHPGRQLGSPPQHDQSRRQGK-QGGGLH 229 SGGH EG H R VP H G PP H+ G GGG H Sbjct: 842 SGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPPHEHRGHDGPGHGGGGH 893
>PP1RA_HUMAN (Q96QC0) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (Phosphatase 1 nuclear targeting subunit) (MHC class I region proline-rich protein CAT53) (FB19 protein) (PP1-binding protein of 114 kDa) (p99) Length = 940 Score = 30.4 bits (67), Expect = 3.1 Identities = 20/52 (38%), Positives = 21/52 (40%), Gaps = 4/52 (7%) Frame = +2 Query: 86 SGGHGDGEGQIH---RPLRRRKVPEHPGRQLGSPPQHDQSRRQGK-QGGGLH 229 SGGH EG H R VP H G PP H+ G GGG H Sbjct: 842 SGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPPHEHRGHDGPGHGGGGH 893
>CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2505 Score = 30.4 bits (67), Expect = 3.1 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 4/58 (6%) Frame = +2 Query: 77 RARSGGHGDGEGQIHRPLRRRKVPEHPGRQLGSPPQHDQSRRQGK----QGGGLHVEG 238 R GG G+GEG RRR P G + D+ RR + QG G+ V G Sbjct: 985 RPARGGEGEGEGPDGGERRRRHRHGAPATYEGDARREDKERRHRRRKENQGSGVPVSG 1042
>CASC3_HUMAN (O15234) Protein CASC3 (Cancer susceptibility candidate gene 3| protein) (Metastatic lymph node protein 51) (MLN 51 protein) (Barentsz protein) (Btz) Length = 703 Score = 30.4 bits (67), Expect = 3.1 Identities = 22/76 (28%), Positives = 28/76 (36%), Gaps = 3/76 (3%) Frame = +2 Query: 2 PRPAHTRSPLAAPLRSPKHFLEQLV---RARSGGHGDGEGQIHRPLRRRKVPEHPGRQLG 172 P P AP+ S LEQ V G+ +P R +P H G Sbjct: 442 PTPPTKTGTWEAPVDSSTSGLEQDVAQLNIAEQNWSPGQPSFLQPRELRGMPNHIHMGAG 501 Query: 173 SPPQHDQSRRQGKQGG 220 PPQ ++ G QGG Sbjct: 502 PPPQFNRMEEMGVQGG 517
>LEU1_BRUSU (Q8FZC4) 2-isopropylmalate synthase (EC 2.3.3.13)| (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase) Length = 555 Score = 30.4 bits (67), Expect = 3.1 Identities = 12/35 (34%), Positives = 22/35 (62%) Frame = -1 Query: 260 ALLDHVVHPRRVNLPLASLGVGFDRVEVGFPTGAQ 156 AL+D + H R+ + + +GF +E+GFP+ +Q Sbjct: 43 ALIDPMGHDRKERMFRLLIDMGFPEIEIGFPSASQ 77
>LEU1_BRUME (Q8YIJ3) 2-isopropylmalate synthase (EC 2.3.3.13)| (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase) Length = 555 Score = 30.4 bits (67), Expect = 3.1 Identities = 12/35 (34%), Positives = 22/35 (62%) Frame = -1 Query: 260 ALLDHVVHPRRVNLPLASLGVGFDRVEVGFPTGAQ 156 AL+D + H R+ + + +GF +E+GFP+ +Q Sbjct: 43 ALIDPMGHDRKERMFRLLIDMGFPEIEIGFPSASQ 77
>HAIR_HUMAN (O43593) Protein hairless| Length = 1189 Score = 30.0 bits (66), Expect = 4.0 Identities = 36/129 (27%), Positives = 45/129 (34%), Gaps = 8/129 (6%) Frame = +2 Query: 86 SGGHGDGEGQIHRP-LRRRKVPEHPGRQ-------LGSPPQHDQSRRQGKQGGGLHVEGA 241 SGGH G+ RP L +R GRQ LG P + G +H G Sbjct: 233 SGGHLQRAGEAERPSLHQRDGEMGAGRQQNPCPLFLGQPDTVPWTSWPACPPGLVHTLGN 292 Query: 242 LHGPKGHALLDCPRERHAQH*HYNR*AGFSLGVQSSPRPPCQLAQVTQQVASPGCYDR*C 421 + G L G+ LG ++PR P VTQ+ GC Sbjct: 293 VWAGPGDGNL-----------------GYQLGPPATPRCPSPEPPVTQR----GCCSSYP 331 Query: 422 PAHEGDKGP 448 P GD GP Sbjct: 332 PTKGGDLGP 340
>GRAP2_HUMAN (O75791) GRB2-related adapter protein 2 (GADS protein) (Growth| factor receptor-binding protein) (GRBLG) (Grf40 adapter protein) (Grf-40) (GRB-2-like protein) (GRB2L) (GRBX) (P38) (Hematopoietic cell-associated adapter protein GrpL) (Adapter p Length = 330 Score = 30.0 bits (66), Expect = 4.0 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 1/81 (1%) Frame = +2 Query: 77 RARSGGHGDGE-GQIHRPLRRRKVPEHPGRQLGSPPQHDQSRRQGKQGGGLHVEGALHGP 253 R++ G H G G+ RP RK+ +HP P Q Q + Q Q + P Sbjct: 163 RSQGGPHLSGAVGEEIRPSMNRKLSDHPPTL---PLQQHQHQPQPPQ----------YAP 209 Query: 254 KGHALLDCPRERHAQH*HYNR 316 L P++R+ QH H+++ Sbjct: 210 APQQLQQPPQQRYLQHHHFHQ 230
>RIMS1_RAT (Q9JIR4) Regulating synaptic membrane exocytosis protein 1| (Rab3-interacting molecule 1) (RIM 1) Length = 1615 Score = 30.0 bits (66), Expect = 4.0 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 5/79 (6%) Frame = +2 Query: 77 RARSGGHGDGEGQIHR-----PLRRRKVPEHPGRQLGSPPQHDQSRRQGKQGGGLHVEGA 241 R+ S GD +G+ PL+R HP R+ SP +H + R HVE Sbjct: 966 RSVSPHRGDDQGRPRSRLPNVPLQRSLDEIHPTRRSRSPTRHHDASRSPADHRSRHVESQ 1025 Query: 242 LHGPKGHALLDCPRERHAQ 298 LL PR + + Sbjct: 1026 YSSEPDSELLMLPRAKRGR 1044
>PP1RA_PIG (Q767K9) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (MHC class I region proline-rich protein CAT53) (Protein FB19) Length = 925 Score = 30.0 bits (66), Expect = 4.0 Identities = 19/47 (40%), Positives = 20/47 (42%), Gaps = 1/47 (2%) Frame = +2 Query: 92 GHGDGEGQIHRPLRRRKVPEHPGRQLGSPPQHDQSRRQGK-QGGGLH 229 GHG G HRP VP H G PP H+ G GGG H Sbjct: 837 GHGGPHG--HRP---HDVPGHRGHDHRGPPPHEHRGHDGPGHGGGGH 878
>CWC25_USTMA (Q4P6I3) Pre-mRNA-splicing factor CWC25| Length = 520 Score = 29.6 bits (65), Expect = 5.3 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = +2 Query: 65 EQLVRARSGGHGDGEGQIHRPLRRRKVPEHPGRQLGSPPQHDQSRRQ 205 ++L+ ARS GHGDG+G +R+ H L + D++R Q Sbjct: 473 QKLIDARSKGHGDGKGNFIMDQQRKTF--HDSVDLAERMRRDRARLQ 517
>CDON_XENLA (Q90Z04) Cell adhesion molecule-related/down-regulated by oncogenes| precursor Length = 1249 Score = 29.6 bits (65), Expect = 5.3 Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 6/63 (9%) Frame = +3 Query: 225 YTSRVHYMVQKGMPYLIVPENDMHNINIIIDERGS--LSVSSPVPGRL----ASLLKSLN 386 Y R ++ + YLI+P ++H +N+ +++RG+ + +PV L ++L S+N Sbjct: 155 YKVRGKWLKESSDKYLILPSGNLHILNVSVEDRGTYRCAAYNPVTHDLKLSTSTLKLSVN 214 Query: 387 KLP 395 + P Sbjct: 215 RSP 217
>ZBT10_RAT (Q9WTY8) Zinc finger and BTB domain-containing protein 10 (Zinc| finger protein RIN ZF) Length = 836 Score = 29.6 bits (65), Expect = 5.3 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Frame = +2 Query: 83 RSGGHGDGEGQIHRPLRRRKVPEHPGR-QLGSPPQHDQSRRQGKQGG 220 R+GG G G+ L+ R PGR Q G Q SRR G +GG Sbjct: 106 RAGGEGVDAGRGVPELQHRGGGGEPGRWQWGGRRQRSSSRRSGGEGG 152
>YNL5_CAEEL (Q21955) Hypothetical protein R12B2.5| Length = 780 Score = 29.6 bits (65), Expect = 5.3 Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 19/82 (23%) Frame = +2 Query: 104 GEGQIHRPL--------RRRKVPEHPGRQLGSPP-----QHDQSRRQGKQ------GGGL 226 G GQ+ P ++ P P Q+ PP QH Q +R Q GGG Sbjct: 463 GNGQVPNPYGGHPGYGHQQYMGPPPPHMQMHQPPMWHQQQHQQQQRMMPQDHMMMQGGGG 522 Query: 227 HVEGALHGPKGHALLDCPRERH 292 V G G GH + P H Sbjct: 523 PVHGMYRGDMGHDPMTSPVNNH 544
>POLS_IPNVJ (P05844) Structural polyprotein (PP) [Contains: Capsid protein VP2;| p1; p2; p3; Protease VP4 (EC 3.4.21.-) (Nonstructural protein VP4) (NS); Capsid assembly protein VP3] Length = 972 Score = 29.6 bits (65), Expect = 5.3 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%) Frame = +3 Query: 261 MPYLIVPENDM-HNINIIIDERGSLSVSSPVPGRLASLL-KSLNKLPPRVAMTGDVLRMK 434 M Y +P ++ N NI++++ + P SLL +++ PR+ TG++ + Sbjct: 603 MCYTALPLKEIKRNGNIVVEKIFAGPAMGPSSQLALSLLVNDIDEGIPRMVFTGEIADDE 662 Query: 435 ETKVPVIAESLKKAILKEH 491 ET +P+ +K EH Sbjct: 663 ETVIPICGVDIKAIAAHEH 681
>QUEA_ANAVT (Q3M3N7) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 408 Score = 29.3 bits (64), Expect = 6.9 Identities = 19/63 (30%), Positives = 28/63 (44%) Frame = +3 Query: 258 GMPYLIVPENDMHNINIIIDERGSLSVSSPVPGRLASLLKSLNKLPPRVAMTGDVLRMKE 437 G Y++ PE N + D L V+S G+ L + + P + GD+L M Sbjct: 29 GYDYVLPPERIAQNPAVPRDSSRLLVVNSQTTGKETPPLHQIFRDLPDILRPGDLLIMNN 88 Query: 438 TKV 446 TKV Sbjct: 89 TKV 91
>QUEA_ANASP (Q8YW18) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 397 Score = 29.3 bits (64), Expect = 6.9 Identities = 19/63 (30%), Positives = 28/63 (44%) Frame = +3 Query: 258 GMPYLIVPENDMHNINIIIDERGSLSVSSPVPGRLASLLKSLNKLPPRVAMTGDVLRMKE 437 G Y++ PE N + D L V+S G+ L + + P + GD+L M Sbjct: 29 GYDYVLPPERIAQNPAVPRDSSRLLVVNSQTTGKETPPLHQIFRDLPDILRPGDLLIMNN 88 Query: 438 TKV 446 TKV Sbjct: 89 TKV 91
>BSP1_CANGA (Q6FQG3) Protein BSP1| Length = 525 Score = 28.9 bits (63), Expect = 9.0 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 13/53 (24%) Frame = +3 Query: 318 ERGSLSVSSP--VPGRLASLLKSLNK-----------LPPRVAMTGDVLRMKE 437 E +S S P + +L S+LK N LPPR A TGD+L KE Sbjct: 447 EESEISDSEPESINNKLESVLKRANTSGQIGSKHIGHLPPRAATTGDLLSKKE 499
>XERC_CHLPN (Q9Z9F7) Tyrosine recombinase xerC| Length = 312 Score = 28.9 bits (63), Expect = 9.0 Identities = 13/36 (36%), Positives = 27/36 (75%) Frame = +3 Query: 288 DMHNINIIIDERGSLSVSSPVPGRLASLLKSLNKLP 395 D++ + I ++ERG+L+ SSP+ +LA+ + +++LP Sbjct: 29 DLNGLKIFLEERGNLAPSSPL--QLATEKRKVSELP 62
>RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 550 Score = 28.9 bits (63), Expect = 9.0 Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 12/72 (16%) Frame = +2 Query: 74 VRARSGGHG----DGEGQIHRPLRRRKVPEHPGRQLGSPPQH--------DQSRRQGKQG 217 V ARSGG G G+GQ +R+ HPG P H +R G+ Sbjct: 432 VGARSGGPGRGAGGGQGQSQGQGQRKHPYGHPGNAPSFPSDHANPGFNPYGAARPAGRPS 491 Query: 218 GGLHVEGALHGP 253 GG G GP Sbjct: 492 GGRPGPGGNRGP 503
>YBOX1_RABIT (Q28618) Nuclease sensitive element-binding protein 1| (Y-box-binding protein 1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (p50) Length = 323 Score = 28.9 bits (63), Expect = 9.0 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = +2 Query: 101 DGEGQIHRPLRRRKVPE-HPGRQLGSPPQHDQSRRQGKQGGGLHVEGA 241 +G+ Q RP RRR+ P + R G PQ+ QG+ G +GA Sbjct: 178 EGQAQQRRPYRRRRFPPYYMRRPYGRRPQYSNPPVQGEVMEGADNQGA 225
>YBOX1_HUMAN (P67809) Nuclease sensitive element-binding protein 1| (Y-box-binding protein 1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB) Length = 323 Score = 28.9 bits (63), Expect = 9.0 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = +2 Query: 101 DGEGQIHRPLRRRKVPE-HPGRQLGSPPQHDQSRRQGKQGGGLHVEGA 241 +G+ Q RP RRR+ P + R G PQ+ QG+ G +GA Sbjct: 178 EGQAQQRRPYRRRRFPPYYMRRPYGRRPQYSNPPVQGEVMEGADNQGA 225
>YBOX1_BOVIN (P67808) Nuclease sensitive element-binding protein 1| (Y-box-binding protein 1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB) Length = 323 Score = 28.9 bits (63), Expect = 9.0 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = +2 Query: 101 DGEGQIHRPLRRRKVPE-HPGRQLGSPPQHDQSRRQGKQGGGLHVEGA 241 +G+ Q RP RRR+ P + R G PQ+ QG+ G +GA Sbjct: 178 EGQAQQRRPYRRRRFPPYYMRRPYGRRPQYSNPPVQGEVMEGADNQGA 225
>TBC19_HUMAN (Q8N5T2) TBC1 domain family member 19| Length = 526 Score = 28.9 bits (63), Expect = 9.0 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 8/49 (16%) Frame = +2 Query: 29 LAAPLRSPKHFLEQLVRARSGGHGDGE--------GQIHRPLRRRKVPE 151 L P+ +PK FLE L+ R+ + +G+ G I PL+ + +PE Sbjct: 148 LFRPVYAPKDFLEVLINLRNPNYENGDSLSFRTHLGLIQVPLKVKDIPE 196
>TRPE_AERPE (Q9Y8T0) Anthranilate synthase component 1 (EC 4.1.3.27)| (Anthranilate synthase component I) Length = 438 Score = 28.9 bits (63), Expect = 9.0 Identities = 16/46 (34%), Positives = 25/46 (54%) Frame = -2 Query: 142 FSAAERAVDLAFAIAMASAPRAHQLLEEMLRGAKGRRQGRTGVCGS 5 F A +A+ A ++ A PRA +++ E+ A+G G GV GS Sbjct: 334 FVEALKALHPAGTVSGAPKPRAMEIIAELEEEARGPYAGAIGVAGS 379 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,878,608 Number of Sequences: 219361 Number of extensions: 1740656 Number of successful extensions: 6140 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 5681 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6118 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3985467738 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
