>Y4597_ARATH (P0C042) Hypothetical protein At4g15970|
          Length = 367

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 19/42 (45%), Positives = 29/42 (69%)
 Frame = +3

Query: 363 LAELLPKVAMDDGTVIITSVNEAFARPGSLLDLLRGSFHDGE 488
           L ++L + A +D TVIIT++N+A++ P S  DL   SFH G+
Sbjct: 42  LGKILTEAATEDKTVIITTLNKAWSEPNSTFDLFLHSFHVGK 83

>IWS1_RAT (Q3SWT4) IWS1-like protein|
          Length = 764

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
 Frame = -1

Query: 196 RKKSSTVGRRAPRRN-------EIEWLTPPPHSCCVLLRLPMSTAPDRSDQYTRRRWTDL 38
           R++ S+ G + PRR+       E + L P     C   R+PM   P   D   R +W   
Sbjct: 661 RRRMSSTGGQTPRRDLEKVLTGEEKALRPGDPGFCARARVPM---PSNKDYVVRPKWNVE 717

Query: 37  LQSQRPG 17
           ++S RPG
Sbjct: 718 MESSRPG 724

>ALR_BRUSU (Q8FVC1) Alanine racemase (EC 5.1.1.1)|
          Length = 396

 Score = 34.3 bits (77), Expect = 0.18
 Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 2/132 (1%)
 Frame = +3

Query: 75  RSGAVDMGSLRSTQHECGGGVSHSISFLLGALLPTVLLFFLASDRVDEQLSTISSFRFGN 254
           R G    G     QH+    V+H       ++LP + L    S RV +          G 
Sbjct: 225 RPGIALYGIDPERQHDFSDKVAHENKKPKHSILPVLTL----SARVIQVRDVDKGATVGY 280

Query: 255 GSSAHQLTSSHAANLSTDVSDGDQKSHAQEGRLFPGLAEL--LPKVAMDDGTVIITSVNE 428
           G +         A ++   +DG  +S + +G  F G   L  + +V+MD  T+ +TS+ E
Sbjct: 281 GGTYVANGPMRIATIAVGYADGLFRSLSNKGAAFFGDTRLPIIGRVSMDSITLDVTSLPE 340

Query: 429 AFARPGSLLDLL 464
              + GSL++L+
Sbjct: 341 GTLKLGSLVELI 352

>ALR_BRUME (Q8YD03) Alanine racemase (EC 5.1.1.1)|
          Length = 396

 Score = 34.3 bits (77), Expect = 0.18
 Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 2/132 (1%)
 Frame = +3

Query: 75  RSGAVDMGSLRSTQHECGGGVSHSISFLLGALLPTVLLFFLASDRVDEQLSTISSFRFGN 254
           R G    G     QH+    V+H       ++LP + L    S RV +          G 
Sbjct: 225 RPGIALYGIDPERQHDFSDKVAHENKKPKHSILPVLTL----SARVIQVRDVDKGATVGY 280

Query: 255 GSSAHQLTSSHAANLSTDVSDGDQKSHAQEGRLFPGLAEL--LPKVAMDDGTVIITSVNE 428
           G +         A ++   +DG  +S + +G  F G   L  + +V+MD  T+ +TS+ E
Sbjct: 281 GGTYVANGPMRIATIAVGYADGLFRSLSNKGAAFFGDTRLPIIGRVSMDSITLDVTSLPE 340

Query: 429 AFARPGSLLDLL 464
              + GSL++L+
Sbjct: 341 GTLKLGSLVELI 352

>KITH_CHICK (P04047) Thymidine kinase, cytosolic (EC 2.7.1.21)|
          Length = 224

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = +3

Query: 342 EGRLFPGLAELLPKVAMDDGTVIITSVNEAFARP--GSLLDLL 464
           EG+ FP + E   K+A    TVI+ +++  F R   GS+L+L+
Sbjct: 99  EGQFFPDIVEFCEKMANTGKTVIVAALDGTFQRKAFGSILNLV 141

>VCAP_HHV11 (P06491) Major capsid protein (MCP) (Capsid protein VP5)|
          Length = 1374

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 14/151 (9%)
 Frame = +3

Query: 78   SGAVDMGSLRSTQHECGGGVSHSI-----SFLLGALLPTVLLFFLASDRVDEQLSTISSF 242
            S A  +G L+  +HE GGGV+ ++     +  LG     V+      + V +  +   +F
Sbjct: 1070 SEAYFLGQLQVARHETGGGVNFTLTQPRANVDLGVGYTAVVATATVRNPVTDMGNLPQNF 1129

Query: 243  RFGNGSSAHQLTSSHAANLSTDVSDGDQKSHAQEGRLFPGLAELLPKVAMDDG------- 401
              G G+    L ++ A  L   V  G++   AQ   +F G A++  +  MD G       
Sbjct: 1130 YLGRGAPP-LLDNAAAVYLRNAVVAGNRLGPAQPVPVF-GCAQVPRRAGMDHGQDAVCEF 1187

Query: 402  --TVIITSVNEAFARPGSLLDLLRGSFHDGE 488
              T + T VN  F RP +      G  + G+
Sbjct: 1188 IATPVSTDVN-YFRRPCNPRGRAAGGVYAGD 1217

>ASIP_BOVIN (Q29414) Agouti signaling protein precursor (ASP) (Agouti switch|
           protein)
          Length = 133

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -1

Query: 253 FPNLKLEMVDSCSS--TRSEARKKSSTVGRRAPRRNEIEWLTPPPHSC 116
           FP++ +  ++  S   +R+EA KK     R+AP +N      PPP  C
Sbjct: 47  FPSVSIVALNKKSKKISRNEAEKKKRPSKRKAPMKNVARTRPPPPTPC 94

>KITH_MOUSE (P04184) Thymidine kinase, cytosolic (EC 2.7.1.21)|
          Length = 233

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
 Frame = +3

Query: 243 RFGNGSSAHQLTSSHA--ANLSTDVSD---GDQKSHAQEGRLFPGLAELLPKVAMDDGTV 407
           R+ N  S H   +  A  A +  DV+    G       EG+ FP + +    +A +  TV
Sbjct: 60  RYSNSFSTHDRNTMDALPACMLRDVTQEALGVAVIGIDEGQFFPDIVDFCEMMANEGKTV 119

Query: 408 IITSVNEAFARP--GSLLDLL 464
           I+ +++  F R   GS+L+L+
Sbjct: 120 IVAALDGTFQRKAFGSILNLV 140

>SURE_VIBVY (Q7MHQ7) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside|
           5'-monophosphate phosphohydrolase)
          Length = 255

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 250 PNLKLEMVDSCSSTRSEARKKSSTVGRRA-PRRNEIEWLTPP 128
           P+L LE ++    TR  AR  +  + ++  PR +EI WL PP
Sbjct: 169 PDLPLEQLEEIRVTRLGARHHAENMIKQLDPRGHEIYWLGPP 210

>SURE_VIBVU (Q8DC57) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside|
           5'-monophosphate phosphohydrolase)
          Length = 255

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 250 PNLKLEMVDSCSSTRSEARKKSSTVGRRA-PRRNEIEWLTPP 128
           P+L LE ++    TR  AR  +  + ++  PR +EI WL PP
Sbjct: 169 PDLPLEQLEEIRVTRLGARHHAENMIKQLDPRGHEIYWLGPP 210

>SURE_VIBCH (Q9KUI9) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside|
           5'-monophosphate phosphohydrolase)
          Length = 250

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 250 PNLKLEMVDSCSSTRSEARKKS-STVGRRAPRRNEIEWLTPP 128
           P+  LE++     TR  AR  + S + ++ PR ++I WL PP
Sbjct: 161 PDRPLELIQGIEVTRLGARHHAESMIKQKDPRGHDIYWLGPP 202

>RPB2_DROME (P08266) DNA-directed RNA polymerase II 140 kDa polypeptide (EC|
           2.7.7.6) (RNA polymerase II subunit 2)
          Length = 1176

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +2

Query: 32  LQQVRPPT----TSILI*SIWCGRHGQPEEHAARVRRRRQPLDLV 154
           L+++ P      T I +   W G H  PE+  A +R+ R+ +D++
Sbjct: 554 LEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDII 598


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,685,875
Number of Sequences: 219361
Number of extensions: 959048
Number of successful extensions: 3384
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3384
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)