ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart27d06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_463633.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 696 Score = 93.7 bits (47), Expect = 5e-16 Identities = 113/135 (83%) Strand = Plus / Plus Query: 353 attcccggggctcgcggagctgctgccgaaggtcgccatggacgacgggacggtgatcat 412 |||||| || || ||||||||||||||| |||| |||||||| ||| |||||||||||| Sbjct: 225 attccccggcctggcggagctgctgccggaggtggccatggaggacaagacggtgatcat 284 Query: 413 cacgtcggtcaacgaggcgttcgcgcggcccggctccctgctcgaccttctccgcgggag 472 ||||||||| ||||| |||| ||| ||| |||||||| |||||||| |||| | || Sbjct: 285 cacgtcggtgaacgacgcgtgggcggcgccgggctccctcctcgacctcttccgtgacag 344 Query: 473 cttccacgacggcga 487 ||||||| ||||||| Sbjct: 345 cttccacaacggcga 359 Score = 89.7 bits (45), Expect = 8e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 153 ttcctcctcggggctctcctccccaccgtgctgctcttcttcctcgcctccgaccgggtc 212 |||||||| || ||| | || |||||||||||||||||||||||||||||||||||||| Sbjct: 34 ttcctcctaggagctgttctgcccaccgtgctgctcttcttcctcgcctccgaccgggtg 93 Query: 213 gacgagcagctgtccaccatctcgagctt 241 ||||| |||| ||||||| |||||||| Sbjct: 94 agcgagcggctgcccaccatatcgagctt 122
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 93.7 bits (47), Expect = 5e-16 Identities = 113/135 (83%) Strand = Plus / Plus Query: 353 attcccggggctcgcggagctgctgccgaaggtcgccatggacgacgggacggtgatcat 412 |||||| || || ||||||||||||||| |||| |||||||| ||| |||||||||||| Sbjct: 40199619 attccccggcctggcggagctgctgccggaggtggccatggaggacaagacggtgatcat 40199678 Query: 413 cacgtcggtcaacgaggcgttcgcgcggcccggctccctgctcgaccttctccgcgggag 472 ||||||||| ||||| |||| ||| ||| |||||||| |||||||| |||| | || Sbjct: 40199679 cacgtcggtgaacgacgcgtgggcggcgccgggctccctcctcgacctcttccgtgacag 40199738 Query: 473 cttccacgacggcga 487 ||||||| ||||||| Sbjct: 40199739 cttccacaacggcga 40199753 Score = 89.7 bits (45), Expect = 8e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 153 ttcctcctcggggctctcctccccaccgtgctgctcttcttcctcgcctccgaccgggtc 212 |||||||| || ||| | || |||||||||||||||||||||||||||||||||||||| Sbjct: 40198440 ttcctcctaggagctgttctgcccaccgtgctgctcttcttcctcgcctccgaccgggtg 40198499 Query: 213 gacgagcagctgtccaccatctcgagctt 241 ||||| |||| ||||||| |||||||| Sbjct: 40198500 agcgagcggctgcccaccatatcgagctt 40198528 Score = 87.7 bits (44), Expect = 3e-14 Identities = 74/84 (88%) Strand = Plus / Plus Query: 393 gacgacgggacggtgatcatcacgtcggtcaacgaggcgttcgcgcggcccggctccctg 452 |||||| |||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 40195842 gacgacaggacggtgatcatcacgtcggtgaacgaggcgttcgcgcggccaaactccctc 40195901 Query: 453 ctcgaccttctccgcgggagcttc 476 |||| ||| |||||| ||||||| Sbjct: 40195902 ctcgtcctcttccgcgagagcttc 40195925 Score = 83.8 bits (42), Expect = 5e-13 Identities = 60/66 (90%) Strand = Plus / Plus Query: 367 cggagctgctgccgaaggtcgccatggacgacgggacggtgatcatcacgtcggtcaacg 426 ||||| ||||||||||||| || ||||| ||| |||||||||||||||||||||| |||| Sbjct: 40205219 cggagttgctgccgaaggtggcgatggaggacaggacggtgatcatcacgtcggtgaacg 40205278 Query: 427 aggcgt 432 |||||| Sbjct: 40205279 aggcgt 40205284 Score = 63.9 bits (32), Expect = 5e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 181 tgctgctcttcttcctcgcctccgaccgggtcgacgagcagctg 224 |||||||||||||||||||||||||| |||| | |||||||||| Sbjct: 40201301 tgctgctcttcttcctcgcctccgacagggtgggcgagcagctg 40201344 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 390 atggacgacgggacggtgatcatcacgtcggtcaacgaggcgt 432 ||||| ||| ||||||||||||| |||||||| |||||||||| Sbjct: 40208731 atggaggacaggacggtgatcatgacgtcggtgaacgaggcgt 40208773 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 181 tgctgctcttcttcctcgcctccgaccgggt 211 ||||||||||||||||||| |||||| |||| Sbjct: 40204574 tgctgctcttcttcctcgcgtccgacagggt 40204604 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 382 aggtcgccatggacgacgggacggtg 407 ||||||||||||||||||| |||||| Sbjct: 1300669 aggtcgccatggacgacggcacggtg 1300694
>dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0678F11 Length = 154292 Score = 93.7 bits (47), Expect = 5e-16 Identities = 113/135 (83%) Strand = Plus / Plus Query: 353 attcccggggctcgcggagctgctgccgaaggtcgccatggacgacgggacggtgatcat 412 |||||| || || ||||||||||||||| |||| |||||||| ||| |||||||||||| Sbjct: 142703 attccccggcctggcggagctgctgccggaggtggccatggaggacaagacggtgatcat 142762 Query: 413 cacgtcggtcaacgaggcgttcgcgcggcccggctccctgctcgaccttctccgcgggag 472 ||||||||| ||||| |||| ||| ||| |||||||| |||||||| |||| | || Sbjct: 142763 cacgtcggtgaacgacgcgtgggcggcgccgggctccctcctcgacctcttccgtgacag 142822 Query: 473 cttccacgacggcga 487 ||||||| ||||||| Sbjct: 142823 cttccacaacggcga 142837 Score = 89.7 bits (45), Expect = 8e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 153 ttcctcctcggggctctcctccccaccgtgctgctcttcttcctcgcctccgaccgggtc 212 |||||||| || ||| | || |||||||||||||||||||||||||||||||||||||| Sbjct: 141524 ttcctcctaggagctgttctgcccaccgtgctgctcttcttcctcgcctccgaccgggtg 141583 Query: 213 gacgagcagctgtccaccatctcgagctt 241 ||||| |||| ||||||| |||||||| Sbjct: 141584 agcgagcggctgcccaccatatcgagctt 141612 Score = 87.7 bits (44), Expect = 3e-14 Identities = 74/84 (88%) Strand = Plus / Plus Query: 393 gacgacgggacggtgatcatcacgtcggtcaacgaggcgttcgcgcggcccggctccctg 452 |||||| |||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 138926 gacgacaggacggtgatcatcacgtcggtgaacgaggcgttcgcgcggccaaactccctc 138985 Query: 453 ctcgaccttctccgcgggagcttc 476 |||| ||| |||||| ||||||| Sbjct: 138986 ctcgtcctcttccgcgagagcttc 139009 Score = 83.8 bits (42), Expect = 5e-13 Identities = 60/66 (90%) Strand = Plus / Plus Query: 367 cggagctgctgccgaaggtcgccatggacgacgggacggtgatcatcacgtcggtcaacg 426 ||||| ||||||||||||| || ||||| ||| |||||||||||||||||||||| |||| Sbjct: 148303 cggagttgctgccgaaggtggcgatggaggacaggacggtgatcatcacgtcggtgaacg 148362 Query: 427 aggcgt 432 |||||| Sbjct: 148363 aggcgt 148368 Score = 63.9 bits (32), Expect = 5e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 181 tgctgctcttcttcctcgcctccgaccgggtcgacgagcagctg 224 |||||||||||||||||||||||||| |||| | |||||||||| Sbjct: 144385 tgctgctcttcttcctcgcctccgacagggtgggcgagcagctg 144428 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 390 atggacgacgggacggtgatcatcacgtcggtcaacgaggcgt 432 ||||| ||| ||||||||||||| |||||||| |||||||||| Sbjct: 151815 atggaggacaggacggtgatcatgacgtcggtgaacgaggcgt 151857 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 181 tgctgctcttcttcctcgcctccgaccgggt 211 ||||||||||||||||||| |||||| |||| Sbjct: 147658 tgctgctcttcttcctcgcgtccgacagggt 147688
>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1793G04 Length = 156714 Score = 93.7 bits (47), Expect = 5e-16 Identities = 113/135 (83%) Strand = Plus / Plus Query: 353 attcccggggctcgcggagctgctgccgaaggtcgccatggacgacgggacggtgatcat 412 |||||| || || ||||||||||||||| |||| |||||||| ||| |||||||||||| Sbjct: 65397 attccccggcctggcggagctgctgccggaggtggccatggaggacaagacggtgatcat 65456 Query: 413 cacgtcggtcaacgaggcgttcgcgcggcccggctccctgctcgaccttctccgcgggag 472 ||||||||| ||||| |||| ||| ||| |||||||| |||||||| |||| | || Sbjct: 65457 cacgtcggtgaacgacgcgtgggcggcgccgggctccctcctcgacctcttccgtgacag 65516 Query: 473 cttccacgacggcga 487 ||||||| ||||||| Sbjct: 65517 cttccacaacggcga 65531 Score = 89.7 bits (45), Expect = 8e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 153 ttcctcctcggggctctcctccccaccgtgctgctcttcttcctcgcctccgaccgggtc 212 |||||||| || ||| | || |||||||||||||||||||||||||||||||||||||| Sbjct: 64218 ttcctcctaggagctgttctgcccaccgtgctgctcttcttcctcgcctccgaccgggtg 64277 Query: 213 gacgagcagctgtccaccatctcgagctt 241 ||||| |||| ||||||| |||||||| Sbjct: 64278 agcgagcggctgcccaccatatcgagctt 64306 Score = 87.7 bits (44), Expect = 3e-14 Identities = 74/84 (88%) Strand = Plus / Plus Query: 393 gacgacgggacggtgatcatcacgtcggtcaacgaggcgttcgcgcggcccggctccctg 452 |||||| |||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 61620 gacgacaggacggtgatcatcacgtcggtgaacgaggcgttcgcgcggccaaactccctc 61679 Query: 453 ctcgaccttctccgcgggagcttc 476 |||| ||| |||||| ||||||| Sbjct: 61680 ctcgtcctcttccgcgagagcttc 61703 Score = 83.8 bits (42), Expect = 5e-13 Identities = 60/66 (90%) Strand = Plus / Plus Query: 367 cggagctgctgccgaaggtcgccatggacgacgggacggtgatcatcacgtcggtcaacg 426 ||||| ||||||||||||| || ||||| ||| |||||||||||||||||||||| |||| Sbjct: 70997 cggagttgctgccgaaggtggcgatggaggacaggacggtgatcatcacgtcggtgaacg 71056 Query: 427 aggcgt 432 |||||| Sbjct: 71057 aggcgt 71062 Score = 63.9 bits (32), Expect = 5e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 181 tgctgctcttcttcctcgcctccgaccgggtcgacgagcagctg 224 |||||||||||||||||||||||||| |||| | |||||||||| Sbjct: 67079 tgctgctcttcttcctcgcctccgacagggtgggcgagcagctg 67122 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 390 atggacgacgggacggtgatcatcacgtcggtcaacgaggcgt 432 ||||| ||| ||||||||||||| |||||||| |||||||||| Sbjct: 74509 atggaggacaggacggtgatcatgacgtcggtgaacgaggcgt 74551 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 181 tgctgctcttcttcctcgcctccgaccgggt 211 ||||||||||||||||||| |||||| |||| Sbjct: 70352 tgctgctcttcttcctcgcgtccgacagggt 70382
>ref|XM_463632.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1110 Score = 87.7 bits (44), Expect = 3e-14 Identities = 74/84 (88%) Strand = Plus / Plus Query: 393 gacgacgggacggtgatcatcacgtcggtcaacgaggcgttcgcgcggcccggctccctg 452 |||||| |||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 262 gacgacaggacggtgatcatcacgtcggtgaacgaggcgttcgcgcggccaaactccctc 321 Query: 453 ctcgaccttctccgcgggagcttc 476 |||| ||| |||||| ||||||| Sbjct: 322 ctcgtcctcttccgcgagagcttc 345
>ref|XM_463635.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1119 Score = 83.8 bits (42), Expect = 5e-13 Identities = 60/66 (90%) Strand = Plus / Plus Query: 367 cggagctgctgccgaaggtcgccatggacgacgggacggtgatcatcacgtcggtcaacg 426 ||||| ||||||||||||| || ||||| ||| |||||||||||||||||||||| |||| Sbjct: 260 cggagttgctgccgaaggtggcgatggaggacaggacggtgatcatcacgtcggtgaacg 319 Query: 427 aggcgt 432 |||||| Sbjct: 320 aggcgt 325 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 181 tgctgctcttcttcctcgcctccgaccgggt 211 ||||||||||||||||||| |||||| |||| Sbjct: 92 tgctgctcttcttcctcgcgtccgacagggt 122
>dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1485_B09 Length = 66599 Score = 83.8 bits (42), Expect = 5e-13 Identities = 60/66 (90%) Strand = Plus / Plus Query: 367 cggagctgctgccgaaggtcgccatggacgacgggacggtgatcatcacgtcggtcaacg 426 ||||| ||||||||||||| || ||||| ||| |||||||||||||||||||||| |||| Sbjct: 4171 cggagttgctgccgaaggtggcgatggaggacaggacggtgatcatcacgtcggtgaacg 4230 Query: 427 aggcgt 432 |||||| Sbjct: 4231 aggcgt 4236 Score = 63.9 bits (32), Expect = 5e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 181 tgctgctcttcttcctcgcctccgaccgggtcgacgagcagctg 224 |||||||||||||||||||||||||| |||| | |||||||||| Sbjct: 253 tgctgctcttcttcctcgcctccgacagggtgggcgagcagctg 296 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 390 atggacgacgggacggtgatcatcacgtcggtcaacgaggcgt 432 ||||| ||| ||||||||||||| |||||||| |||||||||| Sbjct: 7683 atggaggacaggacggtgatcatgacgtcggtgaacgaggcgt 7725 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 181 tgctgctcttcttcctcgcctccgaccgggt 211 ||||||||||||||||||| |||||| |||| Sbjct: 3526 tgctgctcttcttcctcgcgtccgacagggt 3556
>dbj|AK071688.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113H16, full insert sequence Length = 1334 Score = 83.8 bits (42), Expect = 5e-13 Identities = 60/66 (90%) Strand = Plus / Plus Query: 367 cggagctgctgccgaaggtcgccatggacgacgggacggtgatcatcacgtcggtcaacg 426 ||||| ||||||||||||| || ||||| ||| |||||||||||||||||||||| |||| Sbjct: 288 cggagttgctgccgaaggtggcgatggaggacaggacggtgatcatcacgtcggtgaacg 347 Query: 427 aggcgt 432 |||||| Sbjct: 348 aggcgt 353 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 181 tgctgctcttcttcctcgcctccgaccgggt 211 ||||||||||||||||||| |||||| |||| Sbjct: 120 tgctgctcttcttcctcgcgtccgacagggt 150
>ref|XM_463634.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 234 Score = 63.9 bits (32), Expect = 5e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 181 tgctgctcttcttcctcgcctccgaccgggtcgacgagcagctg 224 |||||||||||||||||||||||||| |||| | |||||||||| Sbjct: 59 tgctgctcttcttcctcgcctccgacagggtgggcgagcagctg 102
>ref|XM_463636.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1152 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 390 atggacgacgggacggtgatcatcacgtcggtcaacgaggcgt 432 ||||| ||| ||||||||||||| |||||||| |||||||||| Sbjct: 283 atggaggacaggacggtgatcatgacgtcggtgaacgaggcgt 325
>dbj|AP006165.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1425D05, complete sequence Length = 66450 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 390 atggacgacgggacggtgatcatcacgtcggtcaacgaggcgt 432 ||||| ||| ||||||||||||| |||||||| |||||||||| Sbjct: 81 atggaggacaggacggtgatcatgacgtcggtgaacgaggcgt 123
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Plus Query: 119 cgagtgcggcggcggcgtcagccac 143 ||||||||||||||||||||||||| Sbjct: 8011441 cgagtgcggcggcggcgtcagccac 8011465
>ref|XM_483471.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1008 Score = 48.1 bits (24), Expect = 0.027 Identities = 33/36 (91%) Strand = Plus / Plus Query: 390 atggacgacgggacggtgatcatcacgtcggtcaac 425 ||||||||| ||||||||||||| |||||| ||||| Sbjct: 193 atggacgacaggacggtgatcatgacgtcgatcaac 228
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 48.1 bits (24), Expect = 0.027 Identities = 33/36 (91%) Strand = Plus / Plus Query: 390 atggacgacgggacggtgatcatcacgtcggtcaac 425 ||||||||| ||||||||||||| |||||| ||||| Sbjct: 26392301 atggacgacaggacggtgatcatgacgtcgatcaac 26392336
>dbj|AP003920.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1789_C07 Length = 138944 Score = 48.1 bits (24), Expect = 0.027 Identities = 33/36 (91%) Strand = Plus / Plus Query: 390 atggacgacgggacggtgatcatcacgtcggtcaac 425 ||||||||| ||||||||||||| |||||| ||||| Sbjct: 41853 atggacgacaggacggtgatcatgacgtcgatcaac 41888
>dbj|AP004015.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1770_H02 Length = 170648 Score = 48.1 bits (24), Expect = 0.027 Identities = 33/36 (91%) Strand = Plus / Plus Query: 390 atggacgacgggacggtgatcatcacgtcggtcaac 425 ||||||||| ||||||||||||| |||||| ||||| Sbjct: 121882 atggacgacaggacggtgatcatgacgtcgatcaac 121917
>ref|XM_549968.1| Oryza sativa (japonica cultivar-group), mRNA Length = 345 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 382 aggtcgccatggacgacgggacggtg 407 ||||||||||||||||||| |||||| Sbjct: 143 aggtcgccatggacgacggcacggtg 168
>emb|Z97987.1|HS453P22 Human DNA sequence from clone RP3-453P22 on chromosome 1p36.2-36.3 Contains two novel genes, complete sequence Length = 155176 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 182 gctgctcttcttcctcgcctcc 203 |||||||||||||||||||||| Sbjct: 65264 gctgctcttcttcctcgcctcc 65285
>dbj|AP003046.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0445D12 Length = 140952 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 382 aggtcgccatggacgacgggacggtg 407 ||||||||||||||||||| |||||| Sbjct: 94323 aggtcgccatggacgacggcacggtg 94348
>gb|AC167667.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940123D9, complete sequence Length = 121336 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 114 cagcacgagtgcggcggcggcg 135 |||||||||||||||||||||| Sbjct: 26867 cagcacgagtgcggcggcggcg 26888
>gb|AC108755.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0028C22, complete sequence Length = 154228 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 120 gagtgcggcggcggcgtcagc 140 ||||||||||||||||||||| Sbjct: 124208 gagtgcggcggcggcgtcagc 124228
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 413 cacgtcggtcaacgaggcgtt 433 ||||||||||||||||||||| Sbjct: 3622174 cacgtcggtcaacgaggcgtt 3622194
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 120 gagtgcggcggcggcgtcagc 140 ||||||||||||||||||||| Sbjct: 19796941 gagtgcggcggcggcgtcagc 19796961
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 330 tcacacgcgcaggaggggagattat 354 ||||||||| ||||||||||||||| Sbjct: 17936920 tcacacgcggaggaggggagattat 17936896
>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome Length = 2088737 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 183 ctgctcttcttcctcgcctcc 203 ||||||||||||||||||||| Sbjct: 522786 ctgctcttcttcctcgcctcc 522806 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 183 ctgctcttcttcctcgcctcc 203 ||||||||||||||||||||| Sbjct: 324320 ctgctcttcttcctcgcctcc 324300
>dbj|AP005929.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0071G09 Length = 169148 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 330 tcacacgcgcaggaggggagattat 354 ||||||||| ||||||||||||||| Sbjct: 3226 tcacacgcggaggaggggagattat 3202
>dbj|AP003618.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0561B08 Length = 161083 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 330 tcacacgcgcaggaggggagattat 354 ||||||||| ||||||||||||||| Sbjct: 142109 tcacacgcggaggaggggagattat 142085
>dbj|AP005735.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0034B12 Length = 124083 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 120 gagtgcggcggcggcgtcagc 140 ||||||||||||||||||||| Sbjct: 21381 gagtgcggcggcggcgtcagc 21401
>dbj|AP006756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0450E05 Length = 176553 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 120 gagtgcggcggcggcgtcagc 140 ||||||||||||||||||||| Sbjct: 142627 gagtgcggcggcggcgtcagc 142647
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 agcacgagtgcggcggcggcg 135 ||||||||||||||||||||| Sbjct: 1929042 agcacgagtgcggcggcggcg 1929022
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 110 cacgcagcacgagtgcggcggcggcgtc 137 |||| ||| ||||||||||||||||||| Sbjct: 10650289 cacggagcccgagtgcggcggcggcgtc 10650316
>gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence Length = 187621 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 110 cacgcagcacgagtgcggcggcggcgtc 137 |||| ||| ||||||||||||||||||| Sbjct: 67203 cacggagcccgagtgcggcggcggcgtc 67230
>emb|AL034344.24|HS118B18 Human DNA sequence from clone RP1-118B18 on chromosome 6p24.1-25.3 Contains the FOXC1 gene for forkhead box C1 gene, the 3' end of the GMDS gene for GDP-mannose 4 6-dehydratase and four CpG Islands, complete sequence Length = 104729 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 156 ctcctcggggctctcctccccacc 179 ||||||||||||||||| |||||| Sbjct: 50464 ctcctcggggctctccttcccacc 50487
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 ggtcaacgaggcgttcgcgc 438 |||||||||||||||||||| Sbjct: 3551242 ggtcaacgaggcgttcgcgc 3551261
>gb|AY014032.1| Chondrina avenacea 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 1415 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 tgcggcggcggcgtcagcca 142 |||||||||||||||||||| Sbjct: 436 tgcggcggcggcgtcagcca 417
>gb|AY014031.1| Chondrina clienta 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 1400 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 tgcggcggcggcgtcagcca 142 |||||||||||||||||||| Sbjct: 429 tgcggcggcggcgtcagcca 410
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 110 cacgcagcacgagtgcggcggcggcgtc 137 |||| ||| ||||||||||||||||||| Sbjct: 10648390 cacggagcccgagtgcggcggcggcgtc 10648417
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 178 ccgtgctgctcttcttcctcgcct 201 |||| ||||||||||||||||||| Sbjct: 8133239 ccgtcctgctcttcttcctcgcct 8133262 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 cgaccgggtcgacgagcagc 222 |||||||||||||||||||| Sbjct: 2609276 cgaccgggtcgacgagcagc 2609295
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 362 gctcgcggagctgctgccgaaggt 385 ||||||||||||||||||| |||| Sbjct: 1390703 gctcgcggagctgctgccggaggt 1390726 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 ggtcaacgaggcgttcgcgc 438 |||||||||||||||||||| Sbjct: 77351 ggtcaacgaggcgttcgcgc 77370
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 gctgctcttcttcctcgcct 201 |||||||||||||||||||| Sbjct: 3759675 gctgctcttcttcctcgcct 3759694
>dbj|AK061293.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-B04, full insert sequence Length = 1150 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 110 cacgcagcacgagtgcggcggcggcgtc 137 |||| ||| ||||||||||||||||||| Sbjct: 508 cacggagcccgagtgcggcggcggcgtc 535
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 ggtcaacgaggcgttcgcgc 438 |||||||||||||||||||| Sbjct: 749026 ggtcaacgaggcgttcgcgc 749045 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,319,246 Number of Sequences: 3902068 Number of extensions: 3319246 Number of successful extensions: 70411 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68695 Number of HSP's gapped (non-prelim): 1716 length of query: 490 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 468 effective length of database: 17,147,199,772 effective search space: 8024889493296 effective search space used: 8024889493296 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
