ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart27d01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YB95_ARATH (Q8W487) Protein At2g39795, mitochondrial precursor 64 3e-10
2Y2979_ARATH (O22288) Hypothetical protein At2g39790, mitochondri... 54 5e-07
3ATP7B_RAT (Q64535) Copper-transporting ATPase 2 (EC 3.6.3.4) (Co... 30 5.5
4SARM1_CAEEL (Q86DA5) Sterile alpha and TIR motif-containing prot... 30 7.2
5DDL_GLOVI (Q7NNW1) D-alanine--D-alanine ligase (EC 6.3.2.4) (D-a... 29 9.4

>YB95_ARATH (Q8W487) Protein At2g39795, mitochondrial precursor|
          Length = 250

 Score = 64.3 bits (155), Expect = 3e-10
 Identities = 41/119 (34%), Positives = 59/119 (49%)
 Frame = +1

Query: 250 APSKISSDENLTRVIDSEIECAVESEEGSVQQIDPPEDFPFEIIDNPGDQSIVLKREFGR 429
           A  +ISS++ L RVIDSEI  A++S+     +   P  FPF I D PG+Q++ L R++  
Sbjct: 55  AIDRISSEQTLIRVIDSEINSALQSDNIDSDEEMTPGSFPFRIEDKPGNQNVTLTRDYNG 114

Query: 430 ETIKATVYTNFDTXXXXXXXXXXXXXXXXIKPALQMVVTVEKPQGPILEFECNFNDDEL 606
           E IK  V +                     + ++ +VVTV K  G  LEF C    DE+
Sbjct: 115 EHIKVVV-SMPSLVSDENDDDDDDDEGPSNESSIPLVVTVTKKSGLTLEFSCMAFPDEI 172



to top

>Y2979_ARATH (O22288) Hypothetical protein At2g39790, mitochondrial precursor|
          Length = 240

 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
 Frame = +1

Query: 250 APSKISSDENLTRVIDSEIECAVESEEGSVQQIDPPEDFPFEIIDNPGDQSIVLKREFGR 429
           A  K+SS++ L  VIDSE+  A+++++ ++ +   P  FP +I D PGDQS+ L   +  
Sbjct: 53  AVDKLSSEQTLHLVIDSELNSALQTDDPNLNEEMAPGSFPLKIRDKPGDQSVTLTAYYND 112

Query: 430 ETIKATV---YTNFDTXXXXXXXXXXXXXXXXIKPALQMVVTVEKPQGPILEFEC 585
           E I   V   Y   D                  + +  +VVTV K  G  +EF C
Sbjct: 113 ERIHVDVGMPYLGDDVIDVFGPNND--------ELSFPLVVTVIKKNGVSIEFTC 159



to top

>ATP7B_RAT (Q64535) Copper-transporting ATPase 2 (EC 3.6.3.4) (Copper pump 2)|
           (Wilson disease-associated protein homolog) (Pinal
           night-specific ATPase)
          Length = 1451

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 253 PSKISSDENLTRVIDSEIECAVESEEGSVQQIDPPEDFPFEIIDNPG 393
           PS +SSDE  T V D   E +V  E  +  ++      P  + D+PG
Sbjct: 401 PSVVSSDELRTAVEDMGFEVSVNPENITTNRVSSGNSVPQAVGDSPG 447



to top

>SARM1_CAEEL (Q86DA5) Sterile alpha and TIR motif-containing protein tir-1|
            (Neuronal symmetry protein 2) (SARM1 homolog)
          Length = 1000

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 14/63 (22%), Positives = 31/63 (49%)
 Frame = +1

Query: 226  FLSSQSPAAPSKISSDENLTRVIDSEIECAVESEEGSVQQIDPPEDFPFEIIDNPGDQSI 405
            F+   +P +  ++ +D+N    +  E++CA E ++  +   D   +FP +    P D  +
Sbjct: 817  FILVLTPNSLDRLLNDDNCEDWVHKELKCAFEHQKNIIPIFDTAFEFPTKEDQIPNDIRM 876

Query: 406  VLK 414
            + K
Sbjct: 877  ITK 879



to top

>DDL_GLOVI (Q7NNW1) D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine|
           synthetase) (D-Ala-D-Ala ligase)
          Length = 302

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 265 SSDENLTRVIDSEIECAVESEEGSVQQIDPPEDFPFEIIDNPGD 396
           S +  ++ V    ++ A+E+    V  +DP  D P  +++NP D
Sbjct: 11  SPEREVSLVSGRAVQAALETLGHEVTMVDPGPDLPVRLLENPPD 54


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.311    0.130    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,853,197
Number of Sequences: 219361
Number of extensions: 623062
Number of successful extensions: 1618
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1616
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5424720305
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
to top