Clone Name | bart27d01 |
---|---|
Clone Library Name | barley_pub |
>YB95_ARATH (Q8W487) Protein At2g39795, mitochondrial precursor| Length = 250 Score = 64.3 bits (155), Expect = 3e-10 Identities = 41/119 (34%), Positives = 59/119 (49%) Frame = +1 Query: 250 APSKISSDENLTRVIDSEIECAVESEEGSVQQIDPPEDFPFEIIDNPGDQSIVLKREFGR 429 A +ISS++ L RVIDSEI A++S+ + P FPF I D PG+Q++ L R++ Sbjct: 55 AIDRISSEQTLIRVIDSEINSALQSDNIDSDEEMTPGSFPFRIEDKPGNQNVTLTRDYNG 114 Query: 430 ETIKATVYTNFDTXXXXXXXXXXXXXXXXIKPALQMVVTVEKPQGPILEFECNFNDDEL 606 E IK V + + ++ +VVTV K G LEF C DE+ Sbjct: 115 EHIKVVV-SMPSLVSDENDDDDDDDEGPSNESSIPLVVTVTKKSGLTLEFSCMAFPDEI 172
>Y2979_ARATH (O22288) Hypothetical protein At2g39790, mitochondrial precursor| Length = 240 Score = 53.5 bits (127), Expect = 5e-07 Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 3/115 (2%) Frame = +1 Query: 250 APSKISSDENLTRVIDSEIECAVESEEGSVQQIDPPEDFPFEIIDNPGDQSIVLKREFGR 429 A K+SS++ L VIDSE+ A+++++ ++ + P FP +I D PGDQS+ L + Sbjct: 53 AVDKLSSEQTLHLVIDSELNSALQTDDPNLNEEMAPGSFPLKIRDKPGDQSVTLTAYYND 112 Query: 430 ETIKATV---YTNFDTXXXXXXXXXXXXXXXXIKPALQMVVTVEKPQGPILEFEC 585 E I V Y D + + +VVTV K G +EF C Sbjct: 113 ERIHVDVGMPYLGDDVIDVFGPNND--------ELSFPLVVTVIKKNGVSIEFTC 159
>ATP7B_RAT (Q64535) Copper-transporting ATPase 2 (EC 3.6.3.4) (Copper pump 2)| (Wilson disease-associated protein homolog) (Pinal night-specific ATPase) Length = 1451 Score = 30.0 bits (66), Expect = 5.5 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +1 Query: 253 PSKISSDENLTRVIDSEIECAVESEEGSVQQIDPPEDFPFEIIDNPG 393 PS +SSDE T V D E +V E + ++ P + D+PG Sbjct: 401 PSVVSSDELRTAVEDMGFEVSVNPENITTNRVSSGNSVPQAVGDSPG 447
>SARM1_CAEEL (Q86DA5) Sterile alpha and TIR motif-containing protein tir-1| (Neuronal symmetry protein 2) (SARM1 homolog) Length = 1000 Score = 29.6 bits (65), Expect = 7.2 Identities = 14/63 (22%), Positives = 31/63 (49%) Frame = +1 Query: 226 FLSSQSPAAPSKISSDENLTRVIDSEIECAVESEEGSVQQIDPPEDFPFEIIDNPGDQSI 405 F+ +P + ++ +D+N + E++CA E ++ + D +FP + P D + Sbjct: 817 FILVLTPNSLDRLLNDDNCEDWVHKELKCAFEHQKNIIPIFDTAFEFPTKEDQIPNDIRM 876 Query: 406 VLK 414 + K Sbjct: 877 ITK 879
>DDL_GLOVI (Q7NNW1) D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine| synthetase) (D-Ala-D-Ala ligase) Length = 302 Score = 29.3 bits (64), Expect = 9.4 Identities = 12/44 (27%), Positives = 23/44 (52%) Frame = +1 Query: 265 SSDENLTRVIDSEIECAVESEEGSVQQIDPPEDFPFEIIDNPGD 396 S + ++ V ++ A+E+ V +DP D P +++NP D Sbjct: 11 SPEREVSLVSGRAVQAALETLGHEVTMVDPGPDLPVRLLENPPD 54 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.311 0.130 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,853,197 Number of Sequences: 219361 Number of extensions: 623062 Number of successful extensions: 1618 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1575 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1616 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits)