ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart27c08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 161 bits (81), Expect = 3e-36 Identities = 171/201 (85%) Strand = Plus / Plus Query: 273 cgcgccgtcgcggtgtgtgcggacgtgtcggaccccgcgcaggtggagggcctgttcgac 332 ||||||||||||||| |||||||||||||||| |||||||||| | ||||||||||| Sbjct: 4287370 cgcgccgtcgcggtggccgcggacgtgtcggaccacgcgcaggtgtcgcgcctgttcgac 4287429 Query: 333 gcggcgcaggcggcgttcgggcgcgacctccacatcgtggtggcggccgccgggttccag 392 ||||||| || ||||||||| | ||||| ||| || ||||||| |||||||| | ||| Sbjct: 4287430 gcggcgcgggaggcgttcggcccggacctgcacgtcctggtggccgccgccggcgtgcag 4287489 Query: 393 gacgcggcgtacccggccatcgcggacaccgagccggagcagtgggaccgcgccttcggg 452 |||| ||||||||| |||||||||||| ||||||||||||||||||||| |||| Sbjct: 4287490 gacggcgcgtacccgcgcatcgcggacacgtcgccggagcagtgggaccgcgcgttcgcc 4287549 Query: 453 gtcaacgcgcgcggcacgttc 473 || |||||||||||||||||| Sbjct: 4287550 gtgaacgcgcgcggcacgttc 4287570 Score = 107 bits (54), Expect = 3e-20 Identities = 102/118 (86%) Strand = Plus / Plus Query: 123 ggcgctggcggcattggcgccgccgtcaccgcgcacctcgcatccctcggcgcccgcgtc 182 ||||| ||||||||||||||||| |||||||||||||||| |||||||| ||||||||| Sbjct: 4287235 ggcgccggcggcattggcgccgcggtcaccgcgcacctcgtgtccctcggagcccgcgtc 4287294 Query: 183 gtcgtcggttacatcggcgactcggcacccgcggaccagctggtcgcatccctcaacg 240 || ||||| ||| |||||||| | || ||||| || ||||| ||||| || ||||||| Sbjct: 4287295 gtggtcggctacgtcggcgacccagcccccgccgagcagctcgtcgcgtcgctcaacg 4287352
>dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0554A06 Length = 165311 Score = 161 bits (81), Expect = 3e-36 Identities = 171/201 (85%) Strand = Plus / Plus Query: 273 cgcgccgtcgcggtgtgtgcggacgtgtcggaccccgcgcaggtggagggcctgttcgac 332 ||||||||||||||| |||||||||||||||| |||||||||| | ||||||||||| Sbjct: 132591 cgcgccgtcgcggtggccgcggacgtgtcggaccacgcgcaggtgtcgcgcctgttcgac 132650 Query: 333 gcggcgcaggcggcgttcgggcgcgacctccacatcgtggtggcggccgccgggttccag 392 ||||||| || ||||||||| | ||||| ||| || ||||||| |||||||| | ||| Sbjct: 132651 gcggcgcgggaggcgttcggcccggacctgcacgtcctggtggccgccgccggcgtgcag 132710 Query: 393 gacgcggcgtacccggccatcgcggacaccgagccggagcagtgggaccgcgccttcggg 452 |||| ||||||||| |||||||||||| ||||||||||||||||||||| |||| Sbjct: 132711 gacggcgcgtacccgcgcatcgcggacacgtcgccggagcagtgggaccgcgcgttcgcc 132770 Query: 453 gtcaacgcgcgcggcacgttc 473 || |||||||||||||||||| Sbjct: 132771 gtgaacgcgcgcggcacgttc 132791 Score = 107 bits (54), Expect = 3e-20 Identities = 102/118 (86%) Strand = Plus / Plus Query: 123 ggcgctggcggcattggcgccgccgtcaccgcgcacctcgcatccctcggcgcccgcgtc 182 ||||| ||||||||||||||||| |||||||||||||||| |||||||| ||||||||| Sbjct: 132456 ggcgccggcggcattggcgccgcggtcaccgcgcacctcgtgtccctcggagcccgcgtc 132515 Query: 183 gtcgtcggttacatcggcgactcggcacccgcggaccagctggtcgcatccctcaacg 240 || ||||| ||| |||||||| | || ||||| || ||||| ||||| || ||||||| Sbjct: 132516 gtggtcggctacgtcggcgacccagcccccgccgagcagctcgtcgcgtcgctcaacg 132573
>ref|XM_469741.1| Oryza sativa (japonica cultivar-group), mRNA Length = 804 Score = 61.9 bits (31), Expect = 2e-06 Identities = 93/111 (83%), Gaps = 2/111 (1%) Strand = Plus / Plus Query: 265 gcgggccacgcgccgtcgcggtgtgtgcggacgtgtcggaccccgcgcaggtggagggc- 323 ||||||| || ||| |||||||| ||||||||||||||| | |||| ||| |||||| Sbjct: 209 gcgggccgcgggccatcgcggtggaggcggacgtgtcggacgcggcgcgggt-gagggcg 267 Query: 324 ctgttcgacgcggcgcaggcggcgttcgggcgcgacctccacatcgtggtg 374 ||||||||||||||| |||||||||||| |||| |||||||| ||||| Sbjct: 268 ctgttcgacgcggcggcggcggcgttcggcggcgagatccacatcctggtg 318
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 61.9 bits (31), Expect = 2e-06 Identities = 93/111 (83%), Gaps = 2/111 (1%) Strand = Plus / Plus Query: 265 gcgggccacgcgccgtcgcggtgtgtgcggacgtgtcggaccccgcgcaggtggagggc- 323 ||||||| || ||| |||||||| ||||||||||||||| | |||| ||| |||||| Sbjct: 30496274 gcgggccgcgggccatcgcggtggaggcggacgtgtcggacgcggcgcgggt-gagggcg 30496332 Query: 324 ctgttcgacgcggcgcaggcggcgttcgggcgcgacctccacatcgtggtg 374 ||||||||||||||| |||||||||||| |||| |||||||| ||||| Sbjct: 30496333 ctgttcgacgcggcggcggcggcgttcggcggcgagatccacatcctggtg 30496383 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 105 gtggccatcgtgaccggtggcgctggcggcattggcg 141 ||||||||||||||||| ||||| ||||||| |||| Sbjct: 34699226 gtggccatcgtgaccggcggcgcgagcggcatcggcg 34699262
>gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genomic sequence, complete sequence Length = 139872 Score = 61.9 bits (31), Expect = 2e-06 Identities = 93/111 (83%), Gaps = 2/111 (1%) Strand = Plus / Plus Query: 265 gcgggccacgcgccgtcgcggtgtgtgcggacgtgtcggaccccgcgcaggtggagggc- 323 ||||||| || ||| |||||||| ||||||||||||||| | |||| ||| |||||| Sbjct: 27847 gcgggccgcgggccatcgcggtggaggcggacgtgtcggacgcggcgcgggt-gagggcg 27905 Query: 324 ctgttcgacgcggcgcaggcggcgttcgggcgcgacctccacatcgtggtg 374 ||||||||||||||| |||||||||||| |||| |||||||| ||||| Sbjct: 27906 ctgttcgacgcggcggcggcggcgttcggcggcgagatccacatcctggtg 27956
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 61.9 bits (31), Expect = 2e-06 Identities = 93/111 (83%), Gaps = 2/111 (1%) Strand = Plus / Plus Query: 265 gcgggccacgcgccgtcgcggtgtgtgcggacgtgtcggaccccgcgcaggtggagggc- 323 ||||||| || ||| |||||||| ||||||||||||||| | |||| ||| |||||| Sbjct: 30587696 gcgggccgcgggccatcgcggtggaggcggacgtgtcggacgcggcgcgggt-gagggcg 30587754 Query: 324 ctgttcgacgcggcgcaggcggcgttcgggcgcgacctccacatcgtggtg 374 ||||||||||||||| |||||||||||| |||| |||||||| ||||| Sbjct: 30587755 ctgttcgacgcggcggcggcggcgttcggcggcgagatccacatcctggtg 30587805 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 105 gtggccatcgtgaccggtggcgctggcggcattggcg 141 ||||||||||||||||| ||||| ||||||| |||| Sbjct: 34789298 gtggccatcgtgaccggcggcgcgagcggcatcggcg 34789334
>dbj|AK108283.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-D03, full insert sequence Length = 1022 Score = 61.9 bits (31), Expect = 2e-06 Identities = 93/111 (83%), Gaps = 2/111 (1%) Strand = Plus / Plus Query: 265 gcgggccacgcgccgtcgcggtgtgtgcggacgtgtcggaccccgcgcaggtggagggc- 323 ||||||| || ||| |||||||| ||||||||||||||| | |||| ||| |||||| Sbjct: 313 gcgggccgcgggccatcgcggtggaggcggacgtgtcggacgcggcgcgggt-gagggcg 371 Query: 324 ctgttcgacgcggcgcaggcggcgttcgggcgcgacctccacatcgtggtg 374 ||||||||||||||| |||||||||||| |||| |||||||| ||||| Sbjct: 372 ctgttcgacgcggcggcggcggcgttcggcggcgagatccacatcctggtg 422
>ref|NM_196814.1| Oryza sativa (japonica cultivar-group) putative short-chain alcohol dehydrogenase (OSJNBa0018F16.12), mRNA Length = 786 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 156 cacctcgcatccctcggcgcccgcgtcgtcgtc 188 |||||||| |||||||||||||||||||||||| Sbjct: 94 cacctcgcctccctcggcgcccgcgtcgtcgtc 126
>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16, complete sequence Length = 179157 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 156 cacctcgcatccctcggcgcccgcgtcgtcgtc 188 |||||||| |||||||||||||||||||||||| Sbjct: 28749 cacctcgcctccctcggcgcccgcgtcgtcgtc 28781
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 156 cacctcgcatccctcggcgcccgcgtcgtcgtc 188 |||||||| |||||||||||||||||||||||| Sbjct: 16149860 cacctcgcctccctcggcgcccgcgtcgtcgtc 16149892
>dbj|AK067745.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118E15, full insert sequence Length = 1184 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 156 cacctcgcatccctcggcgcccgcgtcgtcgtc 188 |||||||| |||||||||||||||||||||||| Sbjct: 771 cacctcgcctccctcggcgcccgcgtcgtcgtc 739
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 156 cacctcgcatccctcggcgcccgcgtcgtcgtc 188 |||||||| |||||||||||||||||||||||| Sbjct: 16158101 cacctcgcctccctcggcgcccgcgtcgtcgtc 16158133
>gb|AF311437.2|AH010657S2 Comamonas testosteroni plasmid pTSA incP1beta region, partial sequence and transposon Tntsa, complete sequence Length = 38756 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 105 gtggccatcgtgaccggtggcgc 127 ||||||||||||||||||||||| Sbjct: 31085 gtggccatcgtgaccggtggcgc 31107 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 105 gtggccatcgtgaccggtggcgc 127 ||||||||||||||||||||||| Sbjct: 24046 gtggccatcgtgaccggtggcgc 24024
>ref|NM_001033326.1| Mus musculus dehydrogenase/reductase (SDR family) X chromosome (Dhrsx), mRNA Length = 1859 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 99 ggccgcgtggccatcgtgaccgg 121 ||||||||||||||||||||||| Sbjct: 229 ggccgcgtggccatcgtgaccgg 251
>ref|XM_824036.1| Trypanosoma brucei TREU927 beta-adaptin 3 (Tb11.01.2420) partial mRNA Length = 2757 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 145 ccgtcaccgcgcacctcgcatcc 167 ||||||||||||||||||||||| Sbjct: 2144 ccgtcaccgcgcacctcgcatcc 2122
>emb|AJ296079.1|MMU296079 Mus musculus mRNA for SCAD family protein Length = 852 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 99 ggccgcgtggccatcgtgaccgg 121 ||||||||||||||||||||||| Sbjct: 139 ggccgcgtggccatcgtgaccgg 161
>dbj|AK157461.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830217H11 product:dehydrogenase/reductase (SDR family) X chromosome, full insert sequence Length = 1859 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 99 ggccgcgtggccatcgtgaccgg 121 ||||||||||||||||||||||| Sbjct: 229 ggccgcgtggccatcgtgaccgg 251
>gb|BC046917.1| Mus musculus, clone IMAGE:6477329, mRNA Length = 979 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 99 ggccgcgtggccatcgtgaccgg 121 ||||||||||||||||||||||| Sbjct: 268 ggccgcgtggccatcgtgaccgg 290
>ref|XM_476749.1| Oryza sativa (japonica cultivar-group), mRNA Length = 798 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 97 ccggccgcgtggccatcgtgac 118 |||||||||||||||||||||| Sbjct: 71 ccggccgcgtggccatcgtgac 92
>gb|AE005807.1| Caulobacter crescentus CB15 section 133 of 359 of the complete genome Length = 8803 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 ggcggcgttcgggcgcgacctc 362 |||||||||||||||||||||| Sbjct: 8419 ggcggcgttcgggcgcgacctc 8398
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 97 ccggccgcgtggccatcgtgac 118 |||||||||||||||||||||| Sbjct: 3746174 ccggccgcgtggccatcgtgac 3746153 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 97 ccggccgcgtggccatcgtgaccgg 121 ||||||||||||||||||| ||||| Sbjct: 3744114 ccggccgcgtggccatcgtcaccgg 3744138 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 400 cgtacccggccatcgcggacaccg 423 |||||||||||||||| ||||||| Sbjct: 20879323 cgtacccggccatcgccgacaccg 20879300
>dbj|AP005840.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0050F10 Length = 151986 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 97 ccggccgcgtggccatcgtgac 118 |||||||||||||||||||||| Sbjct: 90525 ccggccgcgtggccatcgtgac 90504 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 97 ccggccgcgtggccatcgtgaccgg 121 ||||||||||||||||||| ||||| Sbjct: 88465 ccggccgcgtggccatcgtcaccgg 88489
>ref|XM_470168.1| Oryza sativa (japonica cultivar-group), mRNA Length = 783 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 105 gtggccatcgtgaccggtggcgctggcggcattggcg 141 ||||||||||||||||| ||||| ||||||| |||| Sbjct: 13 gtggccatcgtgaccggcggcgcgagcggcatcggcg 49
>ref|XM_470312.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1369 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 105 gtggccatcgtgaccggtggcgctggcggcattggcg 141 ||||||||||||||||| ||||| ||||||| |||| Sbjct: 385 gtggccatcgtgaccggcggcgcgagcggcatcggcg 421
>ref|XM_476748.1| Oryza sativa (japonica cultivar-group), mRNA Length = 786 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 97 ccggccgcgtggccatcgtgaccgg 121 ||||||||||||||||||| ||||| Sbjct: 53 ccggccgcgtggccatcgtcaccgg 77
>gb|BT016809.1| Zea mays clone Contig642 mRNA sequence Length = 1709 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 374 ggcggccgccgggttccaggacgcg 398 |||||||||||||| |||||||||| Sbjct: 895 ggcggccgccgggtaccaggacgcg 919
>gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genomic sequence, complete sequence Length = 164352 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 105 gtggccatcgtgaccggtggcgctggcggcattggcg 141 ||||||||||||||||| ||||| ||||||| |||| Sbjct: 163424 gtggccatcgtgaccggcggcgcgagcggcatcggcg 163388
>gb|AY330188.1| Euprymna scolopes Hox class homeodomain-containing protein Antp mRNA, partial sequence Length = 834 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 236 caacgcggccgcggccgcagc 256 ||||||||||||||||||||| Sbjct: 246 caacgcggccgcggccgcagc 266
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 97 ccggccgcgtggccatcgtgaccgg 121 |||||||||||||| |||||||||| Sbjct: 979398 ccggccgcgtggccgtcgtgaccgg 979374
>gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete sequence Length = 164236 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 105 gtggccatcgtgaccggtggcgctggcggcattggcg 141 ||||||||||||||||| ||||| ||||||| |||| Sbjct: 156943 gtggccatcgtgaccggcggcgcgagcggcatcggcg 156979
>gb|CP000136.1| Rhizobium etli CFN 42 plasmid p42c, complete sequence Length = 250948 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 tcggcgcccgcgtcgtcgtcg 189 ||||||||||||||||||||| Sbjct: 233027 tcggcgcccgcgtcgtcgtcg 233007
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 332 cgcggcgcaggcggcgttcgg 352 ||||||||||||||||||||| Sbjct: 240155 cgcggcgcaggcggcgttcgg 240175
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 tcaacgcggccgcggccgcag 255 ||||||||||||||||||||| Sbjct: 2106972 tcaacgcggccgcggccgcag 2106952
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 aacgcggccgcggccgcagcc 257 ||||||||||||||||||||| Sbjct: 4599602 aacgcggccgcggccgcagcc 4599622
>dbj|AK068662.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013161B14, full insert sequence Length = 1042 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 105 gtggccatcgtgaccggtggcgctggcggcattggcg 141 ||||||||||||||||| ||||| ||||||| |||| Sbjct: 58 gtggccatcgtgaccggcggcgcgagcggcatcggcg 94
>dbj|AB074879.2| Rhodobacter sphaeroides f. sp. denitrificans pstS, pstC, pstA, pstB, phoU, phoB genes, complete cds Length = 8584 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 251 cgcagccagctccggcgggcc 271 ||||||||||||||||||||| Sbjct: 7108 cgcagccagctccggcgggcc 7128
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 422 cgagccggagcagtgggaccgcgccttc 449 ||||||| ||| |||||||||||||||| Sbjct: 3431846 cgagccgcagctgtgggaccgcgccttc 3431819
>gb|DQ058416.1| Rhizobium etli strain 8C-3 plasmid clone REB02, partial sequence Length = 190912 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 cggcgcccgcgtcgtcgtcg 189 |||||||||||||||||||| Sbjct: 172031 cggcgcccgcgtcgtcgtcg 172012
>ref|NM_185838.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1362 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 400 cgtacccggccatcgcggacaccg 423 |||||||||||||||| ||||||| Sbjct: 311 cgtacccggccatcgccgacaccg 334
>gb|BT019080.1| Zea mays clone Contig662.F mRNA sequence Length = 1126 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 tcgacgcggcgcaggcggcg 347 |||||||||||||||||||| Sbjct: 130 tcgacgcggcgcaggcggcg 111
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 gcggcattggcgccgccgtc 149 |||||||||||||||||||| Sbjct: 3358869 gcggcattggcgccgccgtc 3358850
>ref|XM_419272.1| PREDICTED: Gallus gallus similar to RIKEN cDNA 1110064P04 (LOC421194), mRNA Length = 1725 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 ggaccagctggtcgcatccc 234 |||||||||||||||||||| Sbjct: 111 ggaccagctggtcgcatccc 92
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 gttcgacgcggcgcaggcgg 345 |||||||||||||||||||| Sbjct: 380668 gttcgacgcggcgcaggcgg 380649
>ref|XM_979437.1| PREDICTED: Mus musculus similar to COMM domain-containing protein 7 (LOC674161), mRNA Length = 3824 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 gcggccgccgggttccagga 394 |||||||||||||||||||| Sbjct: 701 gcggccgccgggttccagga 682
>ref|XM_754832.1| Ustilago maydis 521 hypothetical protein (UM03778.1) partial mRNA Length = 2166 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 cacctcgcatccctcggcgc 175 |||||||||||||||||||| Sbjct: 459 cacctcgcatccctcggcgc 478
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 tggcgctggcggcattggcg 141 |||||||||||||||||||| Sbjct: 1475765 tggcgctggcggcattggcg 1475784
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 cggtggcgctggcggcattg 138 |||||||||||||||||||| Sbjct: 1830607 cggtggcgctggcggcattg 1830626
>emb|AL121917.20|HSJ309F20 Human DNA sequence from clone RP1-309F20 on chromosome 20 Contains part of the GNAS complex locus, a novel gene and a CpG island, complete sequence Length = 42807 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 167 cctcggcgcccgcgtcgtcgtcgg 190 ||||||||||| |||||||||||| Sbjct: 30432 cctcggcgccctcgtcgtcgtcgg 30409
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 cggccgcggccgcagccagc 260 |||||||||||||||||||| Sbjct: 1045025 cggccgcggccgcagccagc 1045044
>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16 Length = 349142 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 cggcgcccgcgtcgtcgtcg 189 |||||||||||||||||||| Sbjct: 139525 cggcgcccgcgtcgtcgtcg 139544
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 gttcgacgcggcgcaggcgg 345 |||||||||||||||||||| Sbjct: 1699850 gttcgacgcggcgcaggcgg 1699831
>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29 Length = 248550 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 acgcggccgcggccgcagcc 257 |||||||||||||||||||| Sbjct: 2335 acgcggccgcggccgcagcc 2354
>emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in linkage group 25, complete sequence Length = 169168 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 gcacctcgcatccctcggcg 174 |||||||||||||||||||| Sbjct: 8297 gcacctcgcatccctcggcg 8316
>emb|AJ810119.1| Thermobifida fusca bta1 gene for BTA-hydrolase 1 and bta2 gene for BTA-hydrolase 2 Length = 4451 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 cggccgcggccgcagccagc 260 |||||||||||||||||||| Sbjct: 324 cggccgcggccgcagccagc 305
>gb|AE005676.1| Caulobacter crescentus CB15 section 2 of 359 of the complete genome Length = 10672 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 tcgacgcggcgcaggcggcg 347 |||||||||||||||||||| Sbjct: 9174 tcgacgcggcgcaggcggcg 9155
>gb|AC087726.36| Chlamydomonas reinhardtii clone cr-40a20, complete sequence Length = 168794 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 ggcattggcgccgccgtcaccgcg 155 ||||||||||||||| |||||||| Sbjct: 110890 ggcattggcgccgccctcaccgcg 110913
>gb|AE011756.1| Xanthomonas axonopodis pv. citri str. 306, section 134 of 469 of the complete genome Length = 12738 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 tggcgctggcggcattggcg 141 |||||||||||||||||||| Sbjct: 7370 tggcgctggcggcattggcg 7389
>gb|AE012490.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 398 of 460 of the complete genome Length = 11621 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 117 accggtggcgctggcggcattggcgccgccgt 148 |||||||||| ||||||||||||||||||| Sbjct: 6892 accggtggcgacagcggcattggcgccgccgt 6923
>dbj|AP003923.1| Mus musculus genomic DNA, chromosome 2, clone:B478c13, complete sequence Length = 171634 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 gcggccgccgggttccagga 394 |||||||||||||||||||| Sbjct: 55076 gcggccgccgggttccagga 55057
>gb|U80928.5|REU80928 Rhizobium etli strain CFN42 symbiotic plasmid p42d, complete sequence Length = 371254 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 cggcgcccgcgtcgtcgtcg 189 |||||||||||||||||||| Sbjct: 25908 cggcgcccgcgtcgtcgtcg 25927
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 ggcgctggcggcattggcgc 142 |||||||||||||||||||| Sbjct: 2439251 ggcgctggcggcattggcgc 2439232
>emb|CR523356.1| Gallus gallus finished cDNA, clone ChEST581m16 Length = 1059 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 ggaccagctggtcgcatccc 234 |||||||||||||||||||| Sbjct: 58 ggaccagctggtcgcatccc 39
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 374 ggcggccgccgggttccaggacgcggcg 401 |||||||||||| ||||||| ||||||| Sbjct: 2712344 ggcggccgccggtttccagggcgcggcg 2712317
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 117 accggtggcgctggcggcattggcgccgccgt 148 |||||||||| ||||||||||||||||||| Sbjct: 4455820 accggtggcgacagcggcattggcgccgccgt 4455851
>gb|AY517643.1| Chlamydomonas reinhardtii phosphoenolpyruvate carboxylase (Ppc2) mRNA, complete cds Length = 4776 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 ggcattggcgccgccgtcaccgcg 155 ||||||||||||||| |||||||| Sbjct: 3223 ggcattggcgccgccctcaccgcg 3246
>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome Length = 143461 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 gccgccgggttccaggacgcggcg 401 ||||||||||||| |||||||||| Sbjct: 53649 gccgccgggttcctggacgcggcg 53672
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 gttcgacgcggcgcaggcgg 345 |||||||||||||||||||| Sbjct: 1150158 gttcgacgcggcgcaggcgg 1150139
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 cggcgcccgcgtcgtcgtcg 189 |||||||||||||||||||| Sbjct: 23628845 cggcgcccgcgtcgtcgtcg 23628864 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 cggcgcccgcgtcgtcgtcg 189 |||||||||||||||||||| Sbjct: 6978964 cggcgcccgcgtcgtcgtcg 6978945
>gb|AF322013.1|AF322012S2 Bradyrhizobium japonicum symbiotic gene region, part 2 of 2 Length = 230573 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 140 cgccgccgtcaccgcgcacctcgc 163 |||||||||| ||||||||||||| Sbjct: 224966 cgccgccgtcgccgcgcacctcgc 224943
>gb|AF246983.1|AF246983 Homo sapiens GNAS1 gene, exon 1A, complete sequence, alternatively spliced Length = 3371 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 167 cctcggcgcccgcgtcgtcgtcgg 190 ||||||||||| |||||||||||| Sbjct: 2665 cctcggcgccctcgtcgtcgtcgg 2642
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 ccctcaacgcggccgcggcc 251 |||||||||||||||||||| Sbjct: 4152750 ccctcaacgcggccgcggcc 4152731
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 ccgccgggttccaggacgcg 398 |||||||||||||||||||| Sbjct: 3503958 ccgccgggttccaggacgcg 3503977
>dbj|AP006753.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0039D04 Length = 184408 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 400 cgtacccggccatcgcggacaccg 423 |||||||||||||||| ||||||| Sbjct: 90113 cgtacccggccatcgccgacaccg 90090
>dbj|AP004779.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0470A03 Length = 133167 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 cggcgcccgcgtcgtcgtcg 189 |||||||||||||||||||| Sbjct: 72586 cggcgcccgcgtcgtcgtcg 72567
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 140 cgccgccgtcaccgcgcacctcgc 163 |||||||||| ||||||||||||| Sbjct: 2283451 cgccgccgtcgccgcgcacctcgc 2283428
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 138 ggcgccgccgtcaccgcgcacctc 161 ||||||||||||||||| |||||| Sbjct: 3385935 ggcgccgccgtcaccgctcacctc 3385958
>dbj|AP003811.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1131_E05 Length = 122216 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 400 cgtacccggccatcgcggacaccg 423 |||||||||||||||| ||||||| Sbjct: 7238 cgtacccggccatcgccgacaccg 7215
>dbj|AP004124.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1669_F01 Length = 140019 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 cggcgcccgcgtcgtcgtcg 189 |||||||||||||||||||| Sbjct: 69945 cggcgcccgcgtcgtcgtcg 69964
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ggtggcgctggcggcattgg 139 |||||||||||||||||||| Sbjct: 5475817 ggtggcgctggcggcattgg 5475798
>dbj|AK064277.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-F07, full insert sequence Length = 1596 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 400 cgtacccggccatcgcggacaccg 423 |||||||||||||||| ||||||| Sbjct: 355 cgtacccggccatcgccgacaccg 378
>gb|AF158096.1|AF158096 Pseudorabies virus early envelope protein (prv43) gene, complete cds Length = 1356 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 gccgccgggttccaggacgcggcg 401 ||||||||||||| |||||||||| Sbjct: 1013 gccgccgggttcctggacgcggcg 1036
>dbj|AP005858.1| Mus musculus genomic DNA, chromosome 2 clone:B478C13, complete sequence Length = 174714 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 gcggccgccgggttccagga 394 |||||||||||||||||||| Sbjct: 55076 gcggccgccgggttccagga 55057
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 tgttcgacgcggcgcaggcg 344 |||||||||||||||||||| Sbjct: 1395857 tgttcgacgcggcgcaggcg 1395838
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 cggccatcgcggacaccgag 425 |||||||||||||||||||| Sbjct: 3534872 cggccatcgcggacaccgag 3534891
>gb|AF058302.1|AF058302 Streptomyces roseofulvus frenolicin biosynthetic gene cluster, complete sequence Length = 25306 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 167 cctcggcgcccgcgtcgtcgtcgg 190 ||||||| |||||||||||||||| Sbjct: 20445 cctcggcccccgcgtcgtcgtcgg 20468
>gb|AF063448.1|AF063448 Xanthomonas citri regulatory protein HrpX (hrpX) gene, complete cds Length = 1853 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 tggcgctggcggcattggcg 141 |||||||||||||||||||| Sbjct: 1030 tggcgctggcggcattggcg 1049
>gb|U27480.1|SHU27480 Suid herpesvirus 1 Prv43 mRNA, partial cds Length = 458 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 gccgccgggttccaggacgcggcg 401 ||||||||||||| |||||||||| Sbjct: 119 gccgccgggttcctggacgcggcg 142
>gb|U45888.1|XCU45888 Xanthomonas campestris pv. vesicatoria HrpXv (hrpXv) gene, complete cds Length = 1806 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 tggcgctggcggcattggcg 141 |||||||||||||||||||| Sbjct: 1078 tggcgctggcggcattggcg 1097
>gb|M26396.1|CVNRUBISCO Chromatium vinosum ribulose 1,5-bisphosphate carbpxylase/oxygenase large and small subunits (rbcA and rbcB) genes, complete cds Length = 2727 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 403 acccggccatcgcggacaccgagccgga 430 |||||||||||| | ||||||||||||| Sbjct: 2133 acccggccatcgagcacaccgagccgga 2160
>gb|M77761.1|SH1PRV Pseudorabies virus Prv43 protein (prv43) gene, complete cds Length = 1361 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 gccgccgggttccaggacgcggcg 401 ||||||||||||| |||||||||| Sbjct: 1018 gccgccgggttcctggacgcggcg 1041
>dbj|AB011449.1| Xanthomonas citri hrpXct gene, complete cds Length = 1431 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 tggcgctggcggcattggcg 141 |||||||||||||||||||| Sbjct: 839 tggcgctggcggcattggcg 858 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,760,191 Number of Sequences: 3902068 Number of extensions: 2760191 Number of successful extensions: 67233 Number of sequences better than 10.0: 91 Number of HSP's better than 10.0 without gapping: 91 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 62095 Number of HSP's gapped (non-prelim): 5141 length of query: 473 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 451 effective length of database: 17,147,199,772 effective search space: 7733387097172 effective search space used: 7733387097172 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
