ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart27c07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_196494.1| Oryza sativa (japonica cultivar-group) putative class III chitinase RCB4 (OSJNBa0032I20.7), mRNA Length = 924 Score = 228 bits (115), Expect = 2e-56 Identities = 327/397 (82%), Gaps = 3/397 (0%) Strand = Plus / Plus Query: 161 aactctaacctcttccgcgactacatcggcgccctttacaacggcgtcaggttcgcggac 220 ||||| ||||||||||| ||||||||||||||| | | ||||||||| | |||| | ||| Sbjct: 79 aactccaacctcttccgggactacatcggcgccatcttcaacggcgtgaagttcaccgac 138 Query: 221 gtgccgatcaacccgcgcgcccggttcgacttcatcctcgcgttcgtcatcgactacacc 280 ||||| ||||| ||| | ||||||||||||||||||||| ||| |||||||||||||| Sbjct: 139 gtgccaatcaatccgaaagtccggttcgacttcatcctcgccttcatcatcgactacacc 198 Query: 281 accgccacggagcccccgaccccgaccaacggccggttcaacgtcttctggcaggacacg 340 |||| ||| | || |||||||||||||||||| ||||||| ||||||||||| ||||| Sbjct: 199 accgagacgaacccgccgaccccgaccaacggcaagttcaacatcttctggcagaacacg 258 Query: 341 gtgctcacccccgccgcgatcgccgaggtcaagcggcggaacccgaacgtgcgcgtggca 400 ||||||||||| | || |||| | |||||| | | ||||| |||||| | ||||| Sbjct: 259 gtgctcaccccgtcggccgtcgcgtcgatcaagcagagcaaccccaacgtgagggtggcc 318 Query: 401 gtcagcctcggcggcgccacggtcaacggcaggcccgtgttcttcaacgccacctccggc 460 |||||| | ||||||||||| || |||| | | || || ||||||||| |||||| | Sbjct: 319 gtcagcatgggcggcgccaccgtgaacgaccgcccggtcttcttcaacatcacctc---c 375 Query: 461 gtcgactcctgggtccgcaacgccgtcgactcgctaaccggcatcatccagcggtacggc 520 |||||||| ||||| |||||| ||||| || || ||||||||||||||| || | Sbjct: 376 gtcgactcgtgggtaaacaacgctgtcgagtccctcaccggcatcatccaggacaacaac 435 Query: 521 ctggacggcatcgacatcgactacgagcagttccagg 557 ||||||||||||||||||||||||||||||||||||| Sbjct: 436 ctggacggcatcgacatcgactacgagcagttccagg 472
>gb|AF350426.1| Oryza sativa (japonica cultivar-group) class III chitinase RCB4 (Rcb4) mRNA, complete cds Length = 1158 Score = 228 bits (115), Expect = 2e-56 Identities = 327/397 (82%), Gaps = 3/397 (0%) Strand = Plus / Plus Query: 161 aactctaacctcttccgcgactacatcggcgccctttacaacggcgtcaggttcgcggac 220 ||||| ||||||||||| ||||||||||||||| | | ||||||||| | |||| | ||| Sbjct: 131 aactccaacctcttccgggactacatcggcgccatcttcaacggcgtgaagttcaccgac 190 Query: 221 gtgccgatcaacccgcgcgcccggttcgacttcatcctcgcgttcgtcatcgactacacc 280 ||||| ||||| ||| | ||||||||||||||||||||| ||| |||||||||||||| Sbjct: 191 gtgccaatcaatccgaaagtccggttcgacttcatcctcgccttcatcatcgactacacc 250 Query: 281 accgccacggagcccccgaccccgaccaacggccggttcaacgtcttctggcaggacacg 340 |||| ||| | || |||||||||||||||||| ||||||| ||||||||||| ||||| Sbjct: 251 accgagacgaacccgccgaccccgaccaacggcaagttcaacatcttctggcagaacacg 310 Query: 341 gtgctcacccccgccgcgatcgccgaggtcaagcggcggaacccgaacgtgcgcgtggca 400 ||||||||||| | || |||| | |||||| | | ||||| |||||| | ||||| Sbjct: 311 gtgctcaccccgtcggccgtcgcgtcgatcaagcagagcaaccccaacgtgagggtggcc 370 Query: 401 gtcagcctcggcggcgccacggtcaacggcaggcccgtgttcttcaacgccacctccggc 460 |||||| | ||||||||||| || |||| | | || || ||||||||| |||||| | Sbjct: 371 gtcagcatgggcggcgccaccgtgaacgaccgcccggtcttcttcaacatcacctc---c 427 Query: 461 gtcgactcctgggtccgcaacgccgtcgactcgctaaccggcatcatccagcggtacggc 520 |||||||| ||||| |||||| ||||| || || ||||||||||||||| || | Sbjct: 428 gtcgactcgtgggtaaacaacgctgtcgagtccctcaccggcatcatccaggacaacaac 487 Query: 521 ctggacggcatcgacatcgactacgagcagttccagg 557 ||||||||||||||||||||||||||||||||||||| Sbjct: 488 ctggacggcatcgacatcgactacgagcagttccagg 524
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 228 bits (115), Expect = 2e-56 Identities = 327/397 (82%), Gaps = 3/397 (0%) Strand = Plus / Plus Query: 161 aactctaacctcttccgcgactacatcggcgccctttacaacggcgtcaggttcgcggac 220 ||||| ||||||||||| ||||||||||||||| | | ||||||||| | |||| | ||| Sbjct: 14044922 aactccaacctcttccgggactacatcggcgccatcttcaacggcgtgaagttcaccgac 14044981 Query: 221 gtgccgatcaacccgcgcgcccggttcgacttcatcctcgcgttcgtcatcgactacacc 280 ||||| ||||| ||| | ||||||||||||||||||||| ||| |||||||||||||| Sbjct: 14044982 gtgccaatcaatccgaaagtccggttcgacttcatcctcgccttcatcatcgactacacc 14045041 Query: 281 accgccacggagcccccgaccccgaccaacggccggttcaacgtcttctggcaggacacg 340 |||| ||| | || |||||||||||||||||| ||||||| ||||||||||| ||||| Sbjct: 14045042 accgagacgaacccgccgaccccgaccaacggcaagttcaacatcttctggcagaacacg 14045101 Query: 341 gtgctcacccccgccgcgatcgccgaggtcaagcggcggaacccgaacgtgcgcgtggca 400 ||||||||||| | || |||| | |||||| | | ||||| |||||| | ||||| Sbjct: 14045102 gtgctcaccccgtcggccgtcgcgtcgatcaagcagagcaaccccaacgtgagggtggcc 14045161 Query: 401 gtcagcctcggcggcgccacggtcaacggcaggcccgtgttcttcaacgccacctccggc 460 |||||| | ||||||||||| || |||| | | || || ||||||||| |||||| | Sbjct: 14045162 gtcagcatgggcggcgccaccgtgaacgaccgcccggtcttcttcaacatcacctc---c 14045218 Query: 461 gtcgactcctgggtccgcaacgccgtcgactcgctaaccggcatcatccagcggtacggc 520 |||||||| ||||| |||||| ||||| || || ||||||||||||||| || | Sbjct: 14045219 gtcgactcgtgggtaaacaacgctgtcgagtccctcaccggcatcatccaggacaacaac 14045278 Query: 521 ctggacggcatcgacatcgactacgagcagttccagg 557 ||||||||||||||||||||||||||||||||||||| Sbjct: 14045279 ctggacggcatcgacatcgactacgagcagttccagg 14045315 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 515 tacggcctggacggcatcgacatcgactacgagca 549 |||||||| |||||| ||||| ||||||||||||| Sbjct: 14088741 tacggcctcgacggcgtcgacgtcgactacgagca 14088775 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 515 tacggcctggacggcatcgacatcgactacgagca 549 |||||||| |||||| ||||| ||||||||||||| Sbjct: 14076301 tacggcctcgacggcgtcgacgtcgactacgagca 14076335 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 249 acttcatcctcgcgttcgtcatcgactac 277 ||||||||||||| |||| |||||||||| Sbjct: 14076023 acttcatcctcgccttcgccatcgactac 14076051
>gb|AF330230.1| Oryza sativa chitinase mRNA, partial cds Length = 941 Score = 228 bits (115), Expect = 2e-56 Identities = 327/397 (82%), Gaps = 3/397 (0%) Strand = Plus / Plus Query: 161 aactctaacctcttccgcgactacatcggcgccctttacaacggcgtcaggttcgcggac 220 ||||| ||||||||||| ||||||||||||||| | | ||||||||| | |||| | ||| Sbjct: 4 aactccaacctcttccgggactacatcggcgccatcttcaacggcgtgaagttcaccgac 63 Query: 221 gtgccgatcaacccgcgcgcccggttcgacttcatcctcgcgttcgtcatcgactacacc 280 ||||| ||||| ||| | ||||||||||||||||||||| ||| |||||||||||||| Sbjct: 64 gtgccaatcaatccgaaagtccggttcgacttcatcctcgccttcatcatcgactacacc 123 Query: 281 accgccacggagcccccgaccccgaccaacggccggttcaacgtcttctggcaggacacg 340 |||| ||| | || |||||||||||||||||| ||||||| ||||||||||| ||||| Sbjct: 124 accgagacgaacccgccgaccccgaccaacggcaagttcaacatcttctggcagaacacg 183 Query: 341 gtgctcacccccgccgcgatcgccgaggtcaagcggcggaacccgaacgtgcgcgtggca 400 ||||||||||| | || |||| | |||||| | | ||||| |||||| | ||||| Sbjct: 184 gtgctcaccccgtcggccgtcgcgtcgatcaagcagagcaaccccaacgtgagggtggcc 243 Query: 401 gtcagcctcggcggcgccacggtcaacggcaggcccgtgttcttcaacgccacctccggc 460 |||||| | ||||||||||| || |||| | | || || ||||||||| |||||| | Sbjct: 244 gtcagcatgggcggcgccaccgtgaacgaccgcccggtcttcttcaacatcacctc---c 300 Query: 461 gtcgactcctgggtccgcaacgccgtcgactcgctaaccggcatcatccagcggtacggc 520 |||||||| ||||| |||||| ||||| || || ||||||||||||||| || | Sbjct: 301 gtcgactcgtgggtaaacaacgctgtcgagtccctcaccggcatcatccaggacaacaac 360 Query: 521 ctggacggcatcgacatcgactacgagcagttccagg 557 ||||||||||||||||||||||||||||||||||||| Sbjct: 361 ctggacggcatcgacatcgactacgagcagttccagg 397
>gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nbxb0032I20, complete sequence Length = 144651 Score = 228 bits (115), Expect = 2e-56 Identities = 327/397 (82%), Gaps = 3/397 (0%) Strand = Plus / Plus Query: 161 aactctaacctcttccgcgactacatcggcgccctttacaacggcgtcaggttcgcggac 220 ||||| ||||||||||| ||||||||||||||| | | ||||||||| | |||| | ||| Sbjct: 61051 aactccaacctcttccgggactacatcggcgccatcttcaacggcgtgaagttcaccgac 61110 Query: 221 gtgccgatcaacccgcgcgcccggttcgacttcatcctcgcgttcgtcatcgactacacc 280 ||||| ||||| ||| | ||||||||||||||||||||| ||| |||||||||||||| Sbjct: 61111 gtgccaatcaatccgaaagtccggttcgacttcatcctcgccttcatcatcgactacacc 61170 Query: 281 accgccacggagcccccgaccccgaccaacggccggttcaacgtcttctggcaggacacg 340 |||| ||| | || |||||||||||||||||| ||||||| ||||||||||| ||||| Sbjct: 61171 accgagacgaacccgccgaccccgaccaacggcaagttcaacatcttctggcagaacacg 61230 Query: 341 gtgctcacccccgccgcgatcgccgaggtcaagcggcggaacccgaacgtgcgcgtggca 400 ||||||||||| | || |||| | |||||| | | ||||| |||||| | ||||| Sbjct: 61231 gtgctcaccccgtcggccgtcgcgtcgatcaagcagagcaaccccaacgtgagggtggcc 61290 Query: 401 gtcagcctcggcggcgccacggtcaacggcaggcccgtgttcttcaacgccacctccggc 460 |||||| | ||||||||||| || |||| | | || || ||||||||| |||||| | Sbjct: 61291 gtcagcatgggcggcgccaccgtgaacgaccgcccggtcttcttcaacatcacctc---c 61347 Query: 461 gtcgactcctgggtccgcaacgccgtcgactcgctaaccggcatcatccagcggtacggc 520 |||||||| ||||| |||||| ||||| || || ||||||||||||||| || | Sbjct: 61348 gtcgactcgtgggtaaacaacgctgtcgagtccctcaccggcatcatccaggacaacaac 61407 Query: 521 ctggacggcatcgacatcgactacgagcagttccagg 557 ||||||||||||||||||||||||||||||||||||| Sbjct: 61408 ctggacggcatcgacatcgactacgagcagttccagg 61444 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 515 tacggcctggacggcatcgacatcgactacgagca 549 |||||||| |||||| ||||| ||||||||||||| Sbjct: 104870 tacggcctcgacggcgtcgacgtcgactacgagca 104904 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 515 tacggcctggacggcatcgacatcgactacgagca 549 |||||||| |||||| ||||| ||||||||||||| Sbjct: 92430 tacggcctcgacggcgtcgacgtcgactacgagca 92464 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 249 acttcatcctcgcgttcgtcatcgactac 277 ||||||||||||| |||| |||||||||| Sbjct: 92152 acttcatcctcgccttcgccatcgactac 92180
>dbj|AK071453.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093F02, full insert sequence Length = 1211 Score = 228 bits (115), Expect = 2e-56 Identities = 327/397 (82%), Gaps = 3/397 (0%) Strand = Plus / Plus Query: 161 aactctaacctcttccgcgactacatcggcgccctttacaacggcgtcaggttcgcggac 220 ||||| ||||||||||| ||||||||||||||| | | ||||||||| | |||| | ||| Sbjct: 132 aactccaacctcttccgggactacatcggcgccatcttcaacggcgtgaagttcaccgac 191 Query: 221 gtgccgatcaacccgcgcgcccggttcgacttcatcctcgcgttcgtcatcgactacacc 280 ||||| ||||| ||| | ||||||||||||||||||||| ||| |||||||||||||| Sbjct: 192 gtgccaatcaatccgaaagtccggttcgacttcatcctcgccttcatcatcgactacacc 251 Query: 281 accgccacggagcccccgaccccgaccaacggccggttcaacgtcttctggcaggacacg 340 |||| ||| | || |||||||||||||||||| ||||||| ||||||||||| ||||| Sbjct: 252 accgagacgaacccgccgaccccgaccaacggcaagttcaacatcttctggcagaacacg 311 Query: 341 gtgctcacccccgccgcgatcgccgaggtcaagcggcggaacccgaacgtgcgcgtggca 400 ||||||||||| | || |||| | |||||| | | ||||| |||||| | ||||| Sbjct: 312 gtgctcaccccgtcggccgtcgcgtcgatcaagcagagcaaccccaacgtgagggtggcc 371 Query: 401 gtcagcctcggcggcgccacggtcaacggcaggcccgtgttcttcaacgccacctccggc 460 |||||| | ||||||||||| || |||| | | || || ||||||||| |||||| | Sbjct: 372 gtcagcatgggcggcgccaccgtgaacgaccgcccggtcttcttcaacatcacctc---c 428 Query: 461 gtcgactcctgggtccgcaacgccgtcgactcgctaaccggcatcatccagcggtacggc 520 |||||||| ||||| |||||| ||||| || || ||||||||||||||| || | Sbjct: 429 gtcgactcgtgggtaaacaacgctgtcgagtccctcaccggcatcatccaggacaacaac 488 Query: 521 ctggacggcatcgacatcgactacgagcagttccagg 557 ||||||||||||||||||||||||||||||||||||| Sbjct: 489 ctggacggcatcgacatcgactacgagcagttccagg 525
>dbj|AK061215.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-E04, full insert sequence Length = 1096 Score = 228 bits (115), Expect = 2e-56 Identities = 327/397 (82%), Gaps = 3/397 (0%) Strand = Plus / Plus Query: 161 aactctaacctcttccgcgactacatcggcgccctttacaacggcgtcaggttcgcggac 220 ||||| ||||||||||| ||||||||||||||| | | ||||||||| | |||| | ||| Sbjct: 17 aactccaacctcttccgggactacatcggcgccatcttcaacggcgtgaagttcaccgac 76 Query: 221 gtgccgatcaacccgcgcgcccggttcgacttcatcctcgcgttcgtcatcgactacacc 280 ||||| ||||| ||| | ||||||||||||||||||||| ||| |||||||||||||| Sbjct: 77 gtgccaatcaatccgaaagtccggttcgacttcatcctcgccttcatcatcgactacacc 136 Query: 281 accgccacggagcccccgaccccgaccaacggccggttcaacgtcttctggcaggacacg 340 |||| ||| | || |||||||||||||||||| ||||||| ||||||||||| ||||| Sbjct: 137 accgagacgaacccgccgaccccgaccaacggcaagttcaacatcttctggcagaacacg 196 Query: 341 gtgctcacccccgccgcgatcgccgaggtcaagcggcggaacccgaacgtgcgcgtggca 400 ||||||||||| | || |||| | |||||| | | ||||| |||||| | ||||| Sbjct: 197 gtgctcaccccgtcggccgtcgcgtcgatcaagcagagcaaccccaacgtgagggtggcc 256 Query: 401 gtcagcctcggcggcgccacggtcaacggcaggcccgtgttcttcaacgccacctccggc 460 |||||| | ||||||||||| || |||| | | || || ||||||||| |||||| | Sbjct: 257 gtcagcatgggcggcgccaccgtgaacgaccgcccggtcttcttcaacatcacctc---c 313 Query: 461 gtcgactcctgggtccgcaacgccgtcgactcgctaaccggcatcatccagcggtacggc 520 |||||||| ||||| |||||| ||||| || || ||||||||||||||| || | Sbjct: 314 gtcgactcgtgggtaaacaacgctgtcgagtccctcaccggcatcatccaggacaacaac 373 Query: 521 ctggacggcatcgacatcgactacgagcagttccagg 557 ||||||||||||||||||||||||||||||||||||| Sbjct: 374 ctggacggcatcgacatcgactacgagcagttccagg 410
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 228 bits (115), Expect = 2e-56 Identities = 327/397 (82%), Gaps = 3/397 (0%) Strand = Plus / Plus Query: 161 aactctaacctcttccgcgactacatcggcgccctttacaacggcgtcaggttcgcggac 220 ||||| ||||||||||| ||||||||||||||| | | ||||||||| | |||| | ||| Sbjct: 14053164 aactccaacctcttccgggactacatcggcgccatcttcaacggcgtgaagttcaccgac 14053223 Query: 221 gtgccgatcaacccgcgcgcccggttcgacttcatcctcgcgttcgtcatcgactacacc 280 ||||| ||||| ||| | ||||||||||||||||||||| ||| |||||||||||||| Sbjct: 14053224 gtgccaatcaatccgaaagtccggttcgacttcatcctcgccttcatcatcgactacacc 14053283 Query: 281 accgccacggagcccccgaccccgaccaacggccggttcaacgtcttctggcaggacacg 340 |||| ||| | || |||||||||||||||||| ||||||| ||||||||||| ||||| Sbjct: 14053284 accgagacgaacccgccgaccccgaccaacggcaagttcaacatcttctggcagaacacg 14053343 Query: 341 gtgctcacccccgccgcgatcgccgaggtcaagcggcggaacccgaacgtgcgcgtggca 400 ||||||||||| | || |||| | |||||| | | ||||| |||||| | ||||| Sbjct: 14053344 gtgctcaccccgtcggccgtcgcgtcgatcaagcagagcaaccccaacgtgagggtggcc 14053403 Query: 401 gtcagcctcggcggcgccacggtcaacggcaggcccgtgttcttcaacgccacctccggc 460 |||||| | ||||||||||| || |||| | | || || ||||||||| |||||| | Sbjct: 14053404 gtcagcatgggcggcgccaccgtgaacgaccgcccggtcttcttcaacatcacctc---c 14053460 Query: 461 gtcgactcctgggtccgcaacgccgtcgactcgctaaccggcatcatccagcggtacggc 520 |||||||| ||||| |||||| ||||| || || ||||||||||||||| || | Sbjct: 14053461 gtcgactcgtgggtaaacaacgctgtcgagtccctcaccggcatcatccaggacaacaac 14053520 Query: 521 ctggacggcatcgacatcgactacgagcagttccagg 557 ||||||||||||||||||||||||||||||||||||| Sbjct: 14053521 ctggacggcatcgacatcgactacgagcagttccagg 14053557 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 515 tacggcctggacggcatcgacatcgactacgagca 549 |||||||| |||||| ||||| ||||||||||||| Sbjct: 14096983 tacggcctcgacggcgtcgacgtcgactacgagca 14097017 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 515 tacggcctggacggcatcgacatcgactacgagca 549 |||||||| |||||| ||||| ||||||||||||| Sbjct: 14084543 tacggcctcgacggcgtcgacgtcgactacgagca 14084577 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 249 acttcatcctcgcgttcgtcatcgactac 277 ||||||||||||| |||| |||||||||| Sbjct: 14084265 acttcatcctcgccttcgccatcgactac 14084293
>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29 Length = 308050 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 514 gtacggcctggacggcatcgacatcgactacgag 547 |||||||||||||||| |||||||||||| |||| Sbjct: 192961 gtacggcctggacggcctcgacatcgacttcgag 192994
>dbj|D84193.1| Streptomyces lividans gene for chitinase, complete cds Length = 2097 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 514 gtacggcctggacggcatcgacatcgactacgag 547 |||||||||||||||| |||||||||||| |||| Sbjct: 1275 gtacggcctggacggcctcgacatcgacttcgag 1308
>dbj|AB017009.1| Streptomyces coelicolor gene for ChiB, partial cds Length = 2687 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 514 gtacggcctggacggcatcgacatcgactacgag 547 |||||||||||||||| |||||||||||| |||| Sbjct: 1711 gtacggcctggacggcctcgacatcgacttcgag 1744
>dbj|AB075593.1| Chamaecyparis obtusa chi2 gene for chitinase class III like, 3' UTR, partial sequence Length = 573 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 524 gacggcatcgacatcgactacgagca 549 |||||||||||||||||||||||||| Sbjct: 57 gacggcatcgacatcgactacgagca 82
>dbj|AB075590.1| Taxodium distichum chi2 gene for chitinase class III like, 3' UTR, partial sequence Length = 577 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 524 gacggcatcgacatcgactacgagca 549 |||||||||||||||||||||||||| Sbjct: 57 gacggcatcgacatcgactacgagca 82
>dbj|AB075589.1| Glyptostrobus lineatus chi2 gene for chitinase class III like, 3' UTR, partial sequence Length = 600 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 524 gacggcatcgacatcgactacgagca 549 |||||||||||||||||||||||||| Sbjct: 57 gacggcatcgacatcgactacgagca 82
>dbj|AB035668.1| Tulipa bakeri tbc1 mRNA for bulb chitinase-1, complete cds Length = 1106 Score = 48.1 bits (24), Expect = 0.031 Identities = 30/32 (93%) Strand = Plus / Plus Query: 249 acttcatcctcgcgttcgtcatcgactacacc 280 ||||||||||||| |||| ||||||||||||| Sbjct: 175 acttcatcctcgctttcgccatcgactacacc 206
>ref|NM_196501.1| Oryza sativa (japonica cultivar-group) putative class III chitinase (OSJNBa0032I20.12), mRNA Length = 867 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 515 tacggcctggacggcatcgacatcgactacgagca 549 |||||||| |||||| ||||| ||||||||||||| Sbjct: 367 tacggcctcgacggcgtcgacgtcgactacgagca 401
>ref|NM_196498.1| Oryza sativa (japonica cultivar-group) putative class III chitinase (OSJNBa0032I20.10), mRNA Length = 861 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 515 tacggcctggacggcatcgacatcgactacgagca 549 |||||||| |||||| ||||| ||||||||||||| Sbjct: 373 tacggcctcgacggcgtcgacgtcgactacgagca 407 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 249 acttcatcctcgcgttcgtcatcgactac 277 ||||||||||||| |||| |||||||||| Sbjct: 95 acttcatcctcgccttcgccatcgactac 123
>gb|AC016780.6| Genomic Sequence For Oryza sativa (japonica cultivar-group) cultivar Nipponbare Clone OSJNBa0061K21 From Chromosome 10, complete sequence Length = 112721 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 515 tacggcctggacggcatcgacatcgactacgagca 549 |||||||| |||||| ||||| ||||||||||||| Sbjct: 28379 tacggcctcgacggcgtcgacgtcgactacgagca 28413 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 515 tacggcctggacggcatcgacatcgactacgagca 549 |||||||| |||||| ||||| ||||||||||||| Sbjct: 15939 tacggcctcgacggcgtcgacgtcgactacgagca 15973 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 249 acttcatcctcgcgttcgtcatcgactac 277 ||||||||||||| |||| |||||||||| Sbjct: 15661 acttcatcctcgccttcgccatcgactac 15689
>gb|AE004591.1| Pseudomonas aeruginosa PAO1, section 152 of 529 of the complete genome Length = 11040 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 406 cctcggcggcgccacggtcaacg 428 ||||||||||||||||||||||| Sbjct: 9741 cctcggcggcgccacggtcaacg 9763
>gb|AF296279.1|AF296279 Oryza sativa subsp. japonica class III chitinase (chib1) gene, complete cds Length = 1038 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 515 tacggcctggacggcatcgacatcgactacgagca 549 |||||||| |||||| ||||| ||||||||||||| Sbjct: 424 tacggcctcgacggcgtcgacgtcgactacgagca 458 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 249 acttcatcctcgcgttcgtcatcgactac 277 ||||||||||||| |||| |||||||||| Sbjct: 146 acttcatcctcgccttcgccatcgactac 174
>dbj|AK119555.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-E12, full insert sequence Length = 1089 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 515 tacggcctggacggcatcgacatcgactacgagca 549 |||||||| |||||| ||||| ||||||||||||| Sbjct: 391 tacggcctcgacggcgtcgacgtcgactacgagca 425
>dbj|AK104397.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-C10, full insert sequence Length = 989 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 515 tacggcctggacggcatcgacatcgactacgagca 549 |||||||| |||||| ||||| ||||||||||||| Sbjct: 429 tacggcctcgacggcgtcgacgtcgactacgagca 463 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 249 acttcatcctcgcgttcgtcatcgactac 277 ||||||||||||| |||| |||||||||| Sbjct: 151 acttcatcctcgccttcgccatcgactac 179
>dbj|AK104292.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-F06, full insert sequence Length = 1108 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 515 tacggcctggacggcatcgacatcgactacgagca 549 |||||||| |||||| ||||| ||||||||||||| Sbjct: 386 tacggcctcgacggcgtcgacgtcgactacgagca 420
>dbj|AK104222.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-E05, full insert sequence Length = 1069 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 515 tacggcctggacggcatcgacatcgactacgagca 549 |||||||| |||||| ||||| ||||||||||||| Sbjct: 391 tacggcctcgacggcgtcgacgtcgactacgagca 425
>dbj|AK104202.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-C04, full insert sequence Length = 1053 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 515 tacggcctggacggcatcgacatcgactacgagca 549 |||||||| |||||| ||||| ||||||||||||| Sbjct: 429 tacggcctcgacggcgtcgacgtcgactacgagca 463 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 249 acttcatcctcgcgttcgtcatcgactac 277 ||||||||||||| |||| |||||||||| Sbjct: 151 acttcatcctcgccttcgccatcgactac 179
>dbj|AK104100.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-G07, full insert sequence Length = 1026 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 515 tacggcctggacggcatcgacatcgactacgagca 549 |||||||| |||||| ||||| ||||||||||||| Sbjct: 429 tacggcctcgacggcgtcgacgtcgactacgagca 463 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 249 acttcatcctcgcgttcgtcatcgactac 277 ||||||||||||| |||| |||||||||| Sbjct: 151 acttcatcctcgccttcgccatcgactac 179
>dbj|AK099101.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023025I19, full insert sequence Length = 1068 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 515 tacggcctggacggcatcgacatcgactacgagca 549 |||||||| |||||| ||||| ||||||||||||| Sbjct: 390 tacggcctcgacggcgtcgacgtcgactacgagca 424
>dbj|AK060033.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H08, full insert sequence Length = 1134 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 515 tacggcctggacggcatcgacatcgactacgagca 549 |||||||| |||||| ||||| ||||||||||||| Sbjct: 391 tacggcctcgacggcgtcgacgtcgactacgagca 425
>dbj|AK059767.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-G07, full insert sequence Length = 1069 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 515 tacggcctggacggcatcgacatcgactacgagca 549 |||||||| |||||| ||||| ||||||||||||| Sbjct: 429 tacggcctcgacggcgtcgacgtcgactacgagca 463 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 249 acttcatcctcgcgttcgtcatcgactac 277 ||||||||||||| |||| |||||||||| Sbjct: 151 acttcatcctcgccttcgccatcgactac 179
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.49 Identities = 31/34 (91%) Strand = Plus / Minus Query: 514 gtacggcctggacggcatcgacatcgactacgag 547 |||||||||||||||| | |||||||||| |||| Sbjct: 3178412 gtacggcctggacggcctggacatcgacttcgag 3178379
>dbj|AB075592.1| Thujopsis dolabrata chi2 gene for chitinase class III like, 3' UTR, partial sequence Length = 593 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 524 gacggcatcgacatcgactacgagca 549 ||||| |||||||||||||||||||| Sbjct: 57 gacggaatcgacatcgactacgagca 82
>gb|AC119426.2| Homo sapiens chromosome 1 clone RP11-203A2, complete sequence Length = 52339 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 29 accaaacaaaagcaggagtaacaaa 53 ||||||||||||||| ||||||||| Sbjct: 12063 accaaacaaaagcagtagtaacaaa 12087
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 279 ccaccgccacggagcccccgaccccgacc 307 ||||||||| ||| ||||||||||||||| Sbjct: 8216685 ccaccgccaaggaacccccgaccccgacc 8216713
>dbj|AP005586.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0450F09 Length = 148752 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 279 ccaccgccacggagcccccgaccccgacc 307 ||||||||| ||| ||||||||||||||| Sbjct: 40607 ccaccgccaaggaacccccgaccccgacc 40635
>emb|CR376854.12| Zebrafish DNA sequence from clone DKEY-197C15 in linkage group 24, complete sequence Length = 201044 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 aacaaaagcaggagtaacaaa 53 ||||||||||||||||||||| Sbjct: 173168 aacaaaagcaggagtaacaaa 173148
>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome Length = 3184243 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 527 ggcatcgacatcgactacgag 547 ||||||||||||||||||||| Sbjct: 854803 ggcatcgacatcgactacgag 854823
>ref|NM_121779.1| Arabidopsis thaliana ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding AT5G17730 mRNA, complete cds Length = 1413 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 ctccaactctaacctcttcc 176 |||||||||||||||||||| Sbjct: 1350 ctccaactctaacctcttcc 1331
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 350 cccgccgcgatcgccgaggtcaag 373 |||||||||||||||||| ||||| Sbjct: 685997 cccgccgcgatcgccgagttcaag 685974
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 350 cccgccgcgatcgccgaggtcaag 373 |||||||||||||||||| ||||| Sbjct: 1210467 cccgccgcgatcgccgagttcaag 1210444
>gb|AC134595.3| Mus musculus BAC clone RP23-388E14 from chromosome 15, complete sequence Length = 189263 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 aacaaaagcaggagtaacaa 52 |||||||||||||||||||| Sbjct: 167561 aacaaaagcaggagtaacaa 167580
>gb|AC124467.3| Mus musculus BAC clone RP24-163L18 from chromosome 15, complete sequence Length = 169366 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 aacaaaagcaggagtaacaa 52 |||||||||||||||||||| Sbjct: 135667 aacaaaagcaggagtaacaa 135648
>emb|BX572594.1| Rhodopseudomonas palustris CGA009 complete genome; segment 2/16 Length = 348971 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 cgccgcgatcgccgaggtca 371 |||||||||||||||||||| Sbjct: 342587 cgccgcgatcgccgaggtca 342568
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 350 cccgccgcgatcgccgaggtcaag 373 |||||||||||||||||| ||||| Sbjct: 1113377 cccgccgcgatcgccgagttcaag 1113354
>gb|AF451898.1| Heliothis zea virus 1, complete genome Length = 228089 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 aaactccaactctaacctct 173 |||||||||||||||||||| Sbjct: 189248 aaactccaactctaacctct 189229
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 523 ggacggcatcgacatcgact 542 |||||||||||||||||||| Sbjct: 5446969 ggacggcatcgacatcgact 5446950
>dbj|AB006706.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MVA3 Length = 81701 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 ctccaactctaacctcttcc 176 |||||||||||||||||||| Sbjct: 34811 ctccaactctaacctcttcc 34830
>gb|AC107746.9| Mus musculus chromosome 1, clone RP23-311K2, complete sequence Length = 202822 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 agcaggagtaacaaaagcta 58 |||||||||||||||||||| Sbjct: 93565 agcaggagtaacaaaagcta 93584
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 cagcctcggcggcgccacgg 422 |||||||||||||||||||| Sbjct: 2260172 cagcctcggcggcgccacgg 2260153 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,018,005 Number of Sequences: 3902068 Number of extensions: 3018005 Number of successful extensions: 58429 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57500 Number of HSP's gapped (non-prelim): 921 length of query: 565 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 542 effective length of database: 17,143,297,704 effective search space: 9291667355568 effective search space used: 9291667355568 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
