ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart27c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MRL1_ASHGO (Q75BD5) Mannose 6-phosphate receptor-like protein 1 ... 31 3.3
2Y229_BARHE (Q6G4V3) Hypothetical UPF0324 membrane protein BH02290 30 7.2
3NFAC1_MOUSE (O88942) Nuclear factor of activated T-cells, cytopl... 30 7.2
4SEC24_YEAST (P40482) Protein transport protein Sec24 (Abnormal n... 30 7.2
5GUC2E_MOUSE (P52785) Guanylyl cyclase GC-E precursor (EC 4.6.1.2... 29 9.5

>MRL1_ASHGO (Q75BD5) Mannose 6-phosphate receptor-like protein 1 precursor|
          Length = 273

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = -2

Query: 319 RPRWCGEHRGWAQRLQDFLSSRRPAAPRHKPDLAIARCGTPNS 191
           RPRW     GWA R + F +  R A PR    LA +  G P S
Sbjct: 214 RPRWAPAPTGWAARTRAFFA--RAAEPRQAIKLASSPPGHPAS 254



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>Y229_BARHE (Q6G4V3) Hypothetical UPF0324 membrane protein BH02290|
          Length = 348

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -3

Query: 594 MFLAFDLEFLT-AFPETGVSSGLPVTPVVTIIQSLDSVTLFSSRVAFLXSCVRITSLSSI 418
           +FL F   FL  +F + GV SG+ V  V  ++ +  SV+  S ++A +   VR+  L  +
Sbjct: 180 LFLPFLHPFLNLSFSQYGVLSGMVVYAVPQVLAATASVSFVSVQIATVVKLVRVLMLGPL 239



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>NFAC1_MOUSE (O88942) Nuclear factor of activated T-cells, cytoplasmic 1 (NFAT|
           transcription complex cytosolic component) (NF-ATc1)
           (NF-ATc)
          Length = 717

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 291 PRCSPHHRGLPSPHPTTTIA 350
           P CSPHH   PSPH +  ++
Sbjct: 277 PSCSPHHSPTPSPHGSPRVS 296



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>SEC24_YEAST (P40482) Protein transport protein Sec24 (Abnormal nuclear|
           morphology 1)
          Length = 926

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 570 FLTAFPETGVSSGLPVTPVVTIIQSLDSVTLFSSRVAFLXSCV 442
           FL    ++ + SGL  T + T++Q+LDS+     R      CV
Sbjct: 308 FLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCV 350



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>GUC2E_MOUSE (P52785) Guanylyl cyclase GC-E precursor (EC 4.6.1.2) (Guanylate|
           cyclase 2E)
          Length = 1108

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 160 SLKPKPPITPGSWGS-RSARSRDRAYVGGRQAAGC 261
           +L P+P +TPGS G+  SA SR    VG    AGC
Sbjct: 102 ALLPEPCLTPGSLGAVSSALSRVSGLVGPVNPAGC 136


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,429,618
Number of Sequences: 219361
Number of extensions: 994802
Number of successful extensions: 3446
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3443
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5481822624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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