>emb|AJ238590.1|TSP238590 Triticum sp. mRNA for E2F protein
          Length = 1974

 Score =  728 bits (367), Expect = 0.0
 Identities = 448/474 (94%), Gaps = 1/474 (0%)
 Strand = Plus / Plus

                                                                       
Query: 139 ccccccgatgccctcctgtcttctctgaagccgaagccgcccatcactcccgggagttgg 198
           |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||
Sbjct: 72  ccccccgatgccctcctgccttctctgaagccgaagacgcccatcgctcccgggagtcgg 131

                                                                       
Query: 199 gggtcccgcagcgcgcgatcgcgagatcgggcttatgtcggggggcggcaggccgccggc 258
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 132 gggtcccgcagcgcgcgatcgcgagatcgggcttatgtctgggggcggcaggccgccggc 191

                                                                       
Query: 259 tgctcagaaaatcctgcagtcgctgcgcccacccccggtgttctccacaccatcgcggcc 318
           ||| || |||||||||||||| |||||||| ||||||||||||||||| || ||||||||
Sbjct: 192 tgcgcaaaaaatcctgcagtctctgcgcccgcccccggtgttctccacgccgtcgcggcc 251

                                                                       
Query: 319 tcccttcgcctcacccgacgactaccatcgctttcatgcgccgactaccccttctgcctc 378
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 252 tcccttcgcctcacccgacgactaccaccgctttcatgcgccgactaccccttctgccac 311

                                                                       
Query: 379 cggctcaggcggcatcggcgccggtggtgttggcggcgatattgatgagaggcttgttat 438
            ||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 312 tggctccggcggcatcggctccggtggtgttggcggcgatattgatgaggggcttgttat 371

                                                                       
Query: 439 ccggacgcagctaanaagaaaagccacacgtgaagaaaataatgtgactgagtcgagtga 498
           |||||||||||||| ||||||||||||||| ||||||||||||| | |||||||||||||
Sbjct: 372 ccggacgcagctaaaaagaaaagccacacgcgaagaaaataatgcggctgagtcgagtga 431

                                                                       
Query: 499 ctgtatgattgtcaccactggagttactggcaatccactactcaccccagtctccggaaa 558
           |||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct: 432 ctgtatgattgtcaccactggagttactggcaatccgctactcaccccagtgtctggaaa 491

                                                                 
Query: 559 agctgttaagaattctaaatcaaaggctaagaac-ataaagctgggcctcagac 611
           ||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 492 agctgttaagaattctaaatcaaagactaagaacaataaagctgggcctcagac 545

>dbj|AK068689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013161I16, full
           insert sequence
          Length = 2349

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 164/203 (80%), Gaps = 4/203 (1%)
 Strand = Plus / Plus

                                                                       
Query: 410 ggcggcgatattgatgagaggcttgttatccggacgcagctaanaagaaaagccacacgt 469
           ||||||||||| || ||| |||| || |||||||||| || || |||||||||  ||   
Sbjct: 456 ggcggcgatatcgaggaggggctggtcatccggacgccgcaaaaaagaaaagcacca--- 512

                                                                       
Query: 470 gaagaaaataatgtgactgagtcgagtgactgtatgattgtcaccactggagttactggc 529
           ||||||| | ||||  ||||||| || ||||||||||||   | | ||||| || ||| |
Sbjct: 513 gaagaaagtgatgttgctgagtctagcgactgtatgattactagccctggatttgctgtc 572

                                                                       
Query: 530 aatccactactcaccccagtctccggaaaagctgttaagaattctaaatcaaaggctaag 589
           | |||| | ||||| |||||||| || ||||||||||||| ||| || |||||| |||||
Sbjct: 573 agtccaatgctcactccagtctctgggaaagctgttaagacttccaagtcaaagactaag 632

                                  
Query: 590 aac-ataaagctgggcctcagac 611
           ||| | |||||||||||||||||
Sbjct: 633 aacaacaaagctgggcctcagac 655



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 264 agaaaatcctgcagtcgctgcgccc 288
           |||| ||||||||||||||||||||
Sbjct: 298 agaagatcctgcagtcgctgcgccc 322

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 105/127 (82%), Gaps = 1/127 (0%)
 Strand = Plus / Minus

                                                                            
Query: 486      ctgagtcgagtgactgtatgattgtcaccactggagttactggcaatccactactcaccc 545
                ||||||| || ||||||||||||   | | ||||| || ||| || |||| | ||||| |
Sbjct: 19890885 ctgagtctagcgactgtatgattactagccctggatttgctgtcagtccaatgctcactc 19890826

                                                                            
Query: 546      cagtctccggaaaagctgttaagaattctaaatcaaaggctaagaac-ataaagctgggc 604
                ||||||| || ||||||||||||| ||| || |||||| |||||||| | ||||||||||
Sbjct: 19890825 cagtctctgggaaagctgttaagacttccaagtcaaagactaagaacaacaaagctgggc 19890766

                       
Query: 605      ctcagac 611
                |||||||
Sbjct: 19890765 ctcagac 19890759



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 264      agaaaatcctgcagtcgctgcgccc 288
                |||| ||||||||||||||||||||
Sbjct: 19892405 agaagatcctgcagtcgctgcgccc 19892381

>dbj|AP004753.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0508B05
          Length = 166165

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 105/127 (82%), Gaps = 1/127 (0%)
 Strand = Plus / Minus

                                                                         
Query: 486   ctgagtcgagtgactgtatgattgtcaccactggagttactggcaatccactactcaccc 545
             ||||||| || ||||||||||||   | | ||||| || ||| || |||| | ||||| |
Sbjct: 68486 ctgagtctagcgactgtatgattactagccctggatttgctgtcagtccaatgctcactc 68427

                                                                         
Query: 546   cagtctccggaaaagctgttaagaattctaaatcaaaggctaagaac-ataaagctgggc 604
             ||||||| || ||||||||||||| ||| || |||||| |||||||| | ||||||||||
Sbjct: 68426 cagtctctgggaaagctgttaagacttccaagtcaaagactaagaacaacaaagctgggc 68367

                    
Query: 605   ctcagac 611
             |||||||
Sbjct: 68366 ctcagac 68360



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 264   agaaaatcctgcagtcgctgcgccc 288
             |||| ||||||||||||||||||||
Sbjct: 70006 agaagatcctgcagtcgctgcgccc 69982

>dbj|AB041725.1| Oryza sativa OsE2F1 mRNA for E2F homolog, complete cds
          Length = 1984

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 105/127 (82%), Gaps = 1/127 (0%)
 Strand = Plus / Plus

                                                                       
Query: 486 ctgagtcgagtgactgtatgattgtcaccactggagttactggcaatccactactcaccc 545
           ||||||| || ||||||||||||   | | ||||| || ||| || |||| | ||||| |
Sbjct: 241 ctgagtctagcgactgtatgattactagccctggatttgctgtcagtccaatgctcactc 300

                                                                       
Query: 546 cagtctccggaaaagctgttaagaattctaaatcaaaggctaagaac-ataaagctgggc 604
           ||||||| || ||||||||||||| ||| || |||||| |||||||| | ||||||||||
Sbjct: 301 cagtctctgggaaagctgttaagacttccaagtcaaagactaagaacaacaaagctgggc 360

                  
Query: 605 ctcagac 611
           |||||||
Sbjct: 361 ctcagac 367

>gb|AC145367.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0064J09 map near 50283S, complete sequence
          Length = 111122

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 386   ggcggcatcggcgccggtggtgttggcgg 414
             ||||||||||||  |||||||||||||||
Sbjct: 97874 ggcggcatcggctacggtggtgttggcgg 97846

>gb|AC145808.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0057F07
              map near 50283S, complete sequence
          Length = 139827

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 386    ggcggcatcggcgccggtggtgttggcgg 414
              ||||||||||||  |||||||||||||||
Sbjct: 136828 ggcggcatcggctacggtggtgttggcgg 136856

>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 341    taccatcgctttcatgcgccg 361
              |||||||||||||||||||||
Sbjct: 779672 taccatcgctttcatgcgccg 779692

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 388     cggcatcggcgccggtggtgttggc 412
               |||||||||||||||||||| ||||
Sbjct: 7910837 cggcatcggcgccggtggtggtggc 7910861

>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 236    tcggggggcggcaggccgccg 256
              |||||||||||||||||||||
Sbjct: 264871 tcggggggcggcaggccgccg 264891

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 386      ggcggcatcggcgccggtggtgttggcgg 414
                ||||||||||||  |||||||||||||||
Sbjct: 14109466 ggcggcatcggctacggtggtgttggcgg 14109438

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 388     cggcatcggcgccggtggtgttggc 412
               |||||||||||||||||||| ||||
Sbjct: 7908672 cggcatcggcgccggtggtggtggc 7908696

>gb|AC134235.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0030J04, complete sequence
          Length = 153431

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 388   cggcatcggcgccggtggtgttggc 412
             |||||||||||||||||||| ||||
Sbjct: 96435 cggcatcggcgccggtggtggtggc 96459

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 386      ggcggcatcggcgccggtggtgttggcgg 414
                ||||||||||||  |||||||||||||||
Sbjct: 14191468 ggcggcatcggctacggtggtgttggcgg 14191440

>gb|AC154521.2| Mus musculus BAC clone RP23-473O6 from chromosome 13, complete sequence
          Length = 211603

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 369   cttctgcctccggctcaggc 388
             ||||||||||||||||||||
Sbjct: 47184 cttctgcctccggctcaggc 47165

>gb|AC136221.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0077J17,
              complete sequence
          Length = 141598

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 404    ggtgttggcggcgatattgatgag 427
              |||||||||||||||| |||||||
Sbjct: 121767 ggtgttggcggcgataatgatgag 121744

>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 209     gcgcgcgatcgcgagatcgg 228
               ||||||||||||||||||||
Sbjct: 1070178 gcgcgcgatcgcgagatcgg 1070159



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 204    ccgcagcgcgcgatcgcgag 223
              ||||||||||||||||||||
Sbjct: 868312 ccgcagcgcgcgatcgcgag 868331

>gb|AC161595.3| Mus musculus BAC clone RP23-471H21 from chromosome 9, complete sequence
          Length = 189223

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 142    cccgatgccctcctgtcttctctg 165
              ||||||| ||||||||||||||||
Sbjct: 132035 cccgatgacctcctgtcttctctg 132058

>gb|AC016814.14| Mus musculus chromosome 1, clone RP23-2M16, complete sequence
          Length = 247961

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 526   tggcaatccactactcaccccagtctcc 553
             |||||||||||||||  |||||||||||
Sbjct: 76293 tggcaatccactactgtccccagtctcc 76320

>gb|AY545025.1| Burkholderia pseudomallei clone BPtf0039 putative AraC/XylS family
            transcription factor gene, complete cds
          Length = 1446

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 204  ccgcagcgcgcgatcgcgag 223
            ||||||||||||||||||||
Sbjct: 1079 ccgcagcgcgcgatcgcgag 1060

>gb|AC126787.12| Medicago truncatula clone mth2-11c8, complete sequence
          Length = 124211

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 417  atattgatgagaggcttgtt 436
            ||||||||||||||||||||
Sbjct: 7652 atattgatgagaggcttgtt 7671

>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 394     cggcgccggtggtgttggcg 413
               ||||||||||||||||||||
Sbjct: 1234982 cggcgccggtggtgttggcg 1235001

>emb|Y08304.1|SLKAGLA S.limosus aglA gene and ORF-S1
          Length = 2242

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 395 ggcgccggtggtgttggcgg 414
           ||||||||||||||||||||
Sbjct: 878 ggcgccggtggtgttggcgg 859

>emb|BX927149.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
              genome; segment 2/10
          Length = 349887

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 508    tgtcaccactggagttactg 527
              ||||||||||||||||||||
Sbjct: 342437 tgtcaccactggagttactg 342418

>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 209     gcgcgcgatcgcgagatcgg 228
               ||||||||||||||||||||
Sbjct: 2387692 gcgcgcgatcgcgagatcgg 2387673



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 204     ccgcagcgcgcgatcgcgag 223
               ||||||||||||||||||||
Sbjct: 2186940 ccgcagcgcgcgatcgcgag 2186959

>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29
          Length = 302007

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 376   ctccggctcaggcggcatcggcgc 399
             ||||||||| ||||||||||||||
Sbjct: 33369 ctccggctcgggcggcatcggcgc 33346

>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 204     ccgcagcgcgcgatcgcgag 223
               ||||||||||||||||||||
Sbjct: 1760399 ccgcagcgcgcgatcgcgag 1760418



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 209    gcgcgcgatcgcgagatcgg 228
              ||||||||||||||||||||
Sbjct: 427608 gcgcgcgatcgcgagatcgg 427627

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 404      ggtgttggcggcgatattgatgag 427
                |||||||||||||||| |||||||
Sbjct: 16481330 ggtgttggcggcgataatgatgag 16481307

>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 508    tgtcaccactggagttactg 527
              ||||||||||||||||||||
Sbjct: 688985 tgtcaccactggagttactg 688966

>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 204    ccgcagcgcgcgatcgcgag 223
              ||||||||||||||||||||
Sbjct: 889692 ccgcagcgcgcgatcgcgag 889673



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 209    gcgcgcgatcgcgagatcgg 228
              ||||||||||||||||||||
Sbjct: 750098 gcgcgcgatcgcgagatcgg 750117


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,768,403
Number of Sequences: 3902068
Number of extensions: 3768403
Number of successful extensions: 65521
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64637
Number of HSP's gapped (non-prelim): 874
length of query: 611
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 588
effective length of database: 17,143,297,704
effective search space: 10080259049952
effective search space used: 10080259049952
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)