ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart27a08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CO410_WHEAT (P46524) Dehydrin COR410 (Cold-induced COR410 protein) 102 7e-22
2DIAP2_MOUSE (O70566) Protein diaphanous homolog 2 (Diaphanous-re... 31 2.0
3PIP12_ORYSA (Q7XSQ9) Probable aquaporin PIP1.2 (Plasma membrane ... 31 2.7
4DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-re... 30 3.5
5RDRP_IBDV (Q9Q6Q5) RNA-directed RNA polymerase (EC 2.7.7.48) (RD... 29 7.8
6RDRP_IBDVA (P12918) RNA-directed RNA polymerase (EC 2.7.7.48) (R... 29 7.8

>CO410_WHEAT (P46524) Dehydrin COR410 (Cold-induced COR410 protein)|
          Length = 262

 Score =  102 bits (254), Expect = 7e-22
 Identities = 71/159 (44%), Positives = 73/159 (45%), Gaps = 8/159 (5%)
 Frame = +1

Query: 100 MEDERSTQSYQGAEA-DQVEVTDRXXXXXXXXXXXXXXXXXXXXXXVTGMXXXXXXX--- 267
           MEDERSTQSYQG EA +QVEVTDR                      VTGM          
Sbjct: 1   MEDERSTQSYQGGEAAEQVEVTDRGLLGNLLGKKKAEEDKEKEEELVTGMEKVSVEEPEV 60

Query: 268 -XXXXXDGEKKETLFSKLHRXXXXXXXXXXXXXXXXVIDENXXXXXXXXXXXXXXXXXXX 444
                 DGEKKETLFSKLHR                VID+N                   
Sbjct: 61  KKEEHEDGEKKETLFSKLHRSSSSSSSSSDEEEEE-VIDDNGEVIKRKKKKGLKEKLQGK 119

Query: 445 XXXXXDNEAEHVTGLPAPMAPASVQT---HHDTDVVVEK 552
                D E EHVTGLPAP APASVQT   HHDTDVVVEK
Sbjct: 120 LPGHKDTEGEHVTGLPAPAAPASVQTHGGHHDTDVVVEK 158



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>DIAP2_MOUSE (O70566) Protein diaphanous homolog 2 (Diaphanous-related formin-2)|
           (DRF2) (mDia3)
          Length = 1098

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 172 GPCPSPPPDRPQLPGMTGCSSHPP 101
           GPCP PPP  P  P + G    PP
Sbjct: 556 GPCPPPPPPPPPPPPLPGVVPPPP 579



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>PIP12_ORYSA (Q7XSQ9) Probable aquaporin PIP1.2 (Plasma membrane intrinsic|
           protein 1.2) (OsPIP1.2)
          Length = 282

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 550 SRRRRRCHGESEQTRGPSVRVGPSRAQP 467
           SRRRRRC  +   +RGPS   G   + P
Sbjct: 29  SRRRRRCSSQGSSSRGPSTAQGSPSSWP 56



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>DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-related formin-1)|
           (DRF1)
          Length = 1248

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -1

Query: 169 PCPSPPPDRPQLPGMTGCSSHPP 101
           P P PPP  P LPG T  S  PP
Sbjct: 601 PPPPPPPPPPPLPGGTAISPPPP 623



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>RDRP_IBDV (Q9Q6Q5) RNA-directed RNA polymerase (EC 2.7.7.48) (RDRP) (Protein|
           VP1)
          Length = 881

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 6/36 (16%)
 Frame = -2

Query: 96  RDRSVQLK----TRGS*RKQRIS--KDYWFLACGFL 7
           R+ S  LK    T+GS +K+ +S   DYW+L+CG L
Sbjct: 283 RELSTLLKQGAGTKGSNKKKLLSMLSDYWYLSCGLL 318



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>RDRP_IBDVA (P12918) RNA-directed RNA polymerase (EC 2.7.7.48) (RDRP) (Protein|
           VP1)
          Length = 878

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 6/36 (16%)
 Frame = -2

Query: 96  RDRSVQLK----TRGS*RKQRIS--KDYWFLACGFL 7
           R+ S  LK    T+GS +K+ +S   DYW+L+CG L
Sbjct: 282 RELSALLKQGAGTKGSNKKKLLSMLSDYWYLSCGLL 317


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.132    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,426,412
Number of Sequences: 219361
Number of extensions: 626082
Number of successful extensions: 3294
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3215
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4488201198
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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