>SSM1_YEAST (P53078) Protein SSM1|
          Length = 280

 Score = 37.4 bits (85), Expect = 0.024
 Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 6/131 (4%)
 Frame = +2

Query: 131 NSPFDCLLIDLDDTLYPGNTGIGPALRRNIDEFLVXXXXXXXXXXXXXXXXXXXSHGSTL 310
           N        D+D+ LY  +T I   ++++I  F                      +G  +
Sbjct: 52  NPNLKVFFFDIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKEYGLAI 111

Query: 311 AGLIALGHDVHPDEYHSYVHGRLPY-DVIAADPQLAAALQSMPQR-KI----LFTNSDRA 472
            GL+   H V+  EY+  V   LP  D++  D  L   L  + Q  KI    LFTN+ + 
Sbjct: 112 RGLVMF-HKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKN 170

Query: 473 HMRRSLERLGL 505
           H  R L  LG+
Sbjct: 171 HAIRCLRLLGI 181

>YEM7_YEAST (P40025) Hypothetical 37.7 kDa protein in PIP1-GLN3 intergenic|
           region
          Length = 321

 Score = 35.8 bits (81), Expect = 0.070
 Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 8/124 (6%)
 Frame = +2

Query: 158 DLDDTLYPGNTGIGPALRRNIDEFLVXXXXXXXXXXXXXXXXXXXSHGSTLAGLIALGHD 337
           D+D+TLY  +T +   +++++  F                      +G ++ GLI     
Sbjct: 58  DIDNTLYRKSTKVQLLMQQSLSNFFKYELGFDDDEAERLIESYYQEYGLSVKGLIKNKQI 117

Query: 338 VHPDEYHSYVHGRLPY-DVIAADPQLAAALQSMPQRKI-------LFTNSDRAHMRRSLE 493
               +Y++++   LP  D +  D +L   L ++ ++K+       LFTNS + H  R ++
Sbjct: 118 DDVLQYNTFIDDSLPLQDYLKPDWKLRELLINLKKKKLGKFDKLWLFTNSYKNHAIRCVK 177

Query: 494 RLGL 505
            LG+
Sbjct: 178 ILGI 181

>YAI5_SCHPO (Q09893) Hypothetical protein C24B11.05 in chromosome I|
          Length = 226

 Score = 35.8 bits (81), Expect = 0.070
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 3/124 (2%)
 Frame = +2

Query: 149 LLIDLDDTLYPGNTGIGPALRRNIDEFLVXXXXXXXXXXXXXXXXXXXSHGSTLAGLIAL 328
           +  DLD+ LYP +  I   +   I  F                      +G  + GL+ L
Sbjct: 8   IFFDLDNCLYPKSYKIHNMMAARITAFFSDKLGIPTEEAERLREVYYRHYGIAIRGLV-L 66

Query: 329 GHDVHPDEYHSYVHGRLPYD-VIAADPQLAAALQSMPQRKI--LFTNSDRAHMRRSLERL 499
            H++   +Y   V   LP + VI  D  L   L  + ++    +FTN+   H  R L+ L
Sbjct: 67  HHEIDAVDYDQRVDQSLPLEKVIKKDEVLREMLLELRKKYKCWIFTNAYIVHANRVLKYL 126

Query: 500 GLDE 511
           G+++
Sbjct: 127 GIED 130

>RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1840

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 207  SAGPMPVLPGYSVSSRSMRRQSKGELKAMAGELAASEEQE 88
            SAG  P LPGYS SS       +G+ K   G+  AS++ +
Sbjct: 1798 SAGYSPTLPGYSPSSTGQYTPHEGDKKDKTGKKDASKDDK 1837

>RSC2_YEAST (Q06488) Chromatin structure remodeling complex protein RSC2|
           (Remodel the structure of chromatin complex subunit 2)
          Length = 889

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = -3

Query: 246 PNLATRNSSMLRLSAGPMPVLPGYSVSSRSMRRQSKGELKAMAGELAASEEQETVD 79
           PNL  +   ++    GP+P  PGY    + +R +++   +A A    +S    + +
Sbjct: 119 PNLKEKYPQLVYPDLGPLPDEPGYEEFQQKLREKAEEVARANAARAESSSSMNSTE 174

>PPNK2_PROMP (Q7V0I8) Probable inorganic polyphosphate/ATP-NAD kinase 2 (EC|
           2.7.1.23) (Poly(P)/ATP NAD kinase 2)
          Length = 302

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -1

Query: 122 WPES*LRARSRKRSIELLKTEQRSLFRLEESRGGW 18
           WPE  +  R  K S++ ++ E    F++  ++ GW
Sbjct: 258 WPEDRVLIRKSKHSVKFIRLEDHEFFQVLRNKLGW 292

>PPNK2_PROM9 (Q319M2) Probable inorganic polyphosphate/ATP-NAD kinase 2 (EC|
           2.7.1.23) (Poly(P)/ATP NAD kinase 2)
          Length = 302

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -1

Query: 122 WPES*LRARSRKRSIELLKTEQRSLFRLEESRGGW 18
           WPE  +  R  K S++ ++ E    F++  ++ GW
Sbjct: 258 WPEDRVLIRKSKHSVKFIRLEDHEFFQVLRNKLGW 292


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,015,493
Number of Sequences: 219361
Number of extensions: 709458
Number of successful extensions: 3189
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3188
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3812186532
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)