>FUS_HUMAN (P35637) RNA-binding protein FUS (Oncogene FUS) (Oncogene TLS)|
           (Translocated in liposarcoma protein) (POMp75) (75 kDa
           DNA-pairing protein)
          Length = 526

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 23/122 (18%), Positives = 44/122 (36%)
 Frame = +3

Query: 138 GQNTHARQGQESHSWFGGQASSGVXXXXXXXXXXXXXXXXXNMMNLGPGYGQQPPQHSVN 317
           GQ++++  GQ  ++ +G Q++                       +  PGYGQQP   S +
Sbjct: 51  GQSSYSSYGQSQNTGYGTQSTPQGYGSTGGYGSSQSSQSSYGQQSSYPGYGQQPAPSSTS 110

Query: 318 INLNEIFGHANVNGNAQGHPLSGNPGTQTXXXXXXXXXXXXXXFSFMGSGNEANHAQQAS 497
            +       ++   ++ G P SG+   Q               ++      + N    +S
Sbjct: 111 GSYG-----SSSQSSSYGQPQSGSYSQQPSYGGQQQSYGQQQSYNPPQGYGQQNQYNSSS 165

Query: 498 GG 503
           GG
Sbjct: 166 GG 167

>PUR9_XYLFA (Q9PC10) Bifunctional purine biosynthesis protein purH [Includes:|
           Phosphoribosylaminoimidazolecarboxamide
           formyltransferase (EC 2.1.2.3) (AICAR transformylase);
           IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP
           synthetase) (ATIC)]
          Length = 527

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +2

Query: 338 WSCKRQWECPGAPIVWESRHPNPTGSFPSKRCS 436
           W C RQ+E P   IV   +H NP G    K CS
Sbjct: 271 WECVRQFEAPACVIV---KHANPCGVAVGKACS 300

>MYB1_PHYPA (P80074) Myb-related protein Pp1 (Fragment)|
          Length = 449

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 273 LGPGYGQQPPQHSVNINLNEIFGHANVNGNAQGHPL 380
           LG    Q+PP HS N+++N +     V  N   H L
Sbjct: 360 LGVNIAQKPPSHSFNLSVNSMVNQVGVPNNIPFHSL 395

>YCF4_SYNEL (Q8DJ41) Photosystem I assembly protein ycf4|
          Length = 192

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 404 GLGAWIPRQWVPLGIPIDVCMTKDFIQIYIYGMLRWLLA 288
           GL +++ R  +P+G PID+      I I  YG+   LLA
Sbjct: 47  GLSSYLHRNLLPIGNPIDLVFIPQGIAIGFYGVAALLLA 85

>FD4_DROME (P32028) Fork head domain protein FD4|
          Length = 372

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 297 PPQHSVNINLNEIFGHANVNGNAQGHPLSGNPGTQT 404
           PP H++N   +  F H     N  G P SG P + T
Sbjct: 284 PPMHTINAGAHVPFLHYATGANVAGLPASGIPNSPT 319

>YNL5_CAEEL (Q21955) Hypothetical protein R12B2.5|
          Length = 780

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = +3

Query: 261 NMMNLGPGYGQQPPQ---HSVNINLNEIFGHANVNG-NAQGHPLSGNPGTQ 401
           + MN GP  GQ PPQ    ++    N   G+  +NG    G P+ GNP  Q
Sbjct: 202 SQMNGGPAMGQPPPQMGAPNMGGPPNGYGGYGMMNGPPGSGAPMGGNPYNQ 252

>PUR9_XYLFT (Q87D58) Bifunctional purine biosynthesis protein purH [Includes:|
           Phosphoribosylaminoimidazolecarboxamide
           formyltransferase (EC 2.1.2.3) (AICAR transformylase);
           IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP
           synthetase) (ATIC)]
          Length = 527

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +2

Query: 338 WSCKRQWECPGAPIVWESRHPNPTGSFPSKRCS 436
           W C RQ+E P   IV   +H NP G      CS
Sbjct: 271 WECVRQFEAPACVIV---KHANPCGVAVGTACS 300

>TRPB2_COREF (Q8FT12) Tryptophan synthase beta chain 2 (EC 4.2.1.20)|
          Length = 439

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -3

Query: 429 RLLGKEPVGFGCLDSQTMGAPGHSH*RLHDQRFHSDLYL-RNAEVAAGHNQAQGSSY*RI 253
           RL+G EP G+G LD+   GAP H    +H    +S   L  +  +   H+ + G  Y  +
Sbjct: 268 RLIGVEPAGYG-LDTDLNGAPIHEGRTMHLHGSNSYALLDEDGNLRNSHSVSAGLDYPGV 326

Query: 252 QEGEEH 235
             G EH
Sbjct: 327 --GPEH 330

>Y051_MYCTU (Q10880) Hypothetical protein Rv0083/MT0090|
          Length = 640

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 401 LGAWIPRQWVPLGIPIDVCMTKDFIQIYIYGMLRWLLAITRP 276
           L AW+PR       P+   M+   + + IYG++R+ L +  P
Sbjct: 196 LHAWLPRAHPEAPSPVSALMSAAMVNLGIYGIVRFDLQLLGP 237

>RS6E_PYRFU (Q8U3H8) 30S ribosomal protein S6e|
          Length = 125

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 273 LGPGYGQQPPQHSVNINLNEIFG 341
           +G   G Q P   +NINLNE+FG
Sbjct: 30  IGKRIGDQIPAKELNINLNELFG 52


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,931,218
Number of Sequences: 219361
Number of extensions: 1691134
Number of successful extensions: 4653
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4651
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3638905326
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)