ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart26h09 |
|---|---|
| Clone Library Name | barley_pub |
>7SB1_SOYBN (P13917) Basic 7S globulin precursor (Bg) (SBg7S) [Contains: Basic| 7S globulin high-kDa subunit; Basic 7S globulin low-kDa subunit] Length = 427 Score = 95.9 bits (237), Expect = 6e-20 Identities = 53/138 (38%), Positives = 73/138 (52%), Gaps = 2/138 (1%) Frame = +2 Query: 119 VVLPVRKDSATGQYLTGFRQRTPQVPVTAVLDLGGASLWVDCDAGYVSSSYAGVPCASKL 298 VVLPV+ D +TG + ++RTP + V ++DL G LWV+C+ Y S +Y C S Sbjct: 34 VVLPVQNDGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFCHSTQ 93 Query: 299 CRLAKSVACATSCVGKPSPGCLNDTCSGFPENTVTRVSTGGNLITDVLSVPTTFRPAP-- 472 C A + C SC PGC +TC N +T+ + G L DVL++ T Sbjct: 94 CSRANTHQC-LSCPAASRPGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQL 152 Query: 473 GPLATAPAFLFTCGATFL 526 GPL T P FLF+C +FL Sbjct: 153 GPLVTVPQFLFSCAPSFL 170
>7SBG2_SOYBN (Q8RVH5) Basic 7S globulin 2 precursor (Bg) (SBg7S) [Contains:| Basic 7S globulin 2 high-kDa subunit; Basic 7S globulin 2 low-kDa subunit] Length = 433 Score = 95.1 bits (235), Expect = 1e-19 Identities = 52/138 (37%), Positives = 74/138 (53%), Gaps = 2/138 (1%) Frame = +2 Query: 119 VVLPVRKDSATGQYLTGFRQRTPQVPVTAVLDLGGASLWVDCDAGYVSSSYAGVPCASKL 298 +VLPV+ D++TG + ++RTP + V ++DL G LWV+C+ Y S +Y C S Sbjct: 41 LVLPVQNDASTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQHYSSKTYQAPFCHSTQ 100 Query: 299 CRLAKSVACATSCVGKPSPGCLNDTCSGFPENTVTRVSTGGNLITDVLSVPTTFRPAP-- 472 C A + C SC PGC +TC N +T+ + G L DVL++ T Sbjct: 101 CSRANTHQC-LSCPAASRPGCHKNTCGLMSTNPITQQTGLGELGQDVLAIHATQGSTQQL 159 Query: 473 GPLATAPAFLFTCGATFL 526 GPL T P FLF+C +FL Sbjct: 160 GPLVTVPQFLFSCAPSFL 177
>NEP1_NEPGR (Q766C3) Aspartic proteinase nepenthesin-1 precursor (EC 3.4.23.-)| (Nepenthesin-I) Length = 437 Score = 45.8 bits (107), Expect = 7e-05 Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 16/126 (12%) Frame = +2 Query: 104 NNPSAVVLPVRKDSATGQYLTGFRQRTPQVPVTAVLDLGGASLWVDCDA----------- 250 N PS V V + G+YL TP P +A++D G +W C Sbjct: 79 NGPSGVETSVY--AGDGEYLMNLSIGTPAQPFSAIMDTGSDLIWTQCQPCTQCFNQSTPI 136 Query: 251 --GYVSSSYAGVPCASKLCRLAKSVACATSCVGKPSPGCLNDTCS---GFPENTVTRVST 415 SSS++ +PC+S+LC+ SP C N+ C G+ + + T+ S Sbjct: 137 FNPQGSSSFSTLPCSSQLCQALS------------SPTCSNNFCQYTYGYGDGSETQGSM 184 Query: 416 GGNLIT 433 G +T Sbjct: 185 GTETLT 190
>NEP2_NEPGR (Q766C2) Aspartic proteinase nepenthesin-2 precursor (EC 3.4.23.-)| (Nepenthesin-II) Length = 438 Score = 37.0 bits (84), Expect = 0.034 Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 16/137 (11%) Frame = +2 Query: 152 GQYLTGFRQRTPQVPVTAVLDLGGASLWVDCDA-------------GYVSSSYAGVPCAS 292 G+YL TP +A++D G +W C+ SSS++ +PC S Sbjct: 94 GEYLMNVAIGTPDSSFSAIMDTGSDLIWTQCEPCTQCFSQPTPIFNPQDSSSFSTLPCES 153 Query: 293 KLCRLAKSVACATSCVGKPSPGCLNDTCS---GFPENTVTRVSTGGNLITDVLSVPTTFR 463 + C+ PS C N+ C G+ + + T+ G + T+ + T Sbjct: 154 QYCQ------------DLPSETCNNNECQYTYGYGDGSTTQ----GYMATETFTFET--- 194 Query: 464 PAPGPLATAPAFLFTCG 514 ++ P F CG Sbjct: 195 ------SSVPNIAFGCG 205
>ESR1_FELCA (Q53AD2) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)| Length = 595 Score = 32.7 bits (73), Expect = 0.64 Identities = 39/138 (28%), Positives = 55/138 (39%), Gaps = 14/138 (10%) Frame = -3 Query: 498 NAGAVASGP---------GAGRKVVGTDSTSVMRFPP---VLTRVTVFSGNPLQVS-FRH 358 NA A AS P G+G + + + FPP V V P Q+S F H Sbjct: 63 NAAAAASAPVYGQSGLAYGSGSEAAAFGANGLGGFPPLNSVSPSPLVLLHPPPQLSPFLH 122 Query: 357 P-GDGLPTQLVAQATLFARRHSLDAHGTPA*DEDTYPASQSTQSEAPPRSSTAVTGTWGV 181 P G +P L + + +A R + G PA T + QS +ST G+ + Sbjct: 123 PHGQQVPYYLENEPSGYAVREA----GPPAFYRPT--SDNRRQSGRERLASTGDKGSMAM 176 Query: 180 RCRKPVRYCPVALSFLTG 127 K RYC V + +G Sbjct: 177 ESAKETRYCAVCNDYASG 194
>TLE4_RAT (Q07141) Transducin-like enhancer protein 4 (ESP2 protein)| Length = 741 Score = 32.0 bits (71), Expect = 1.1 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Frame = -3 Query: 528 VRNVAPHVNRNAGAVASGPGAGRK-VVGTDSTSVMRFPPVLTRVTVFSGNPLQVSFRHPG 352 + N++P ++ A A A+ GR VVG D MR P + +T G SF Sbjct: 364 LHNISPQMSAAAAAAAAAAAYGRSPVVGFDPHHHMRVPAIPPNLTGIPGGKPAYSFHVSA 423 Query: 351 DG 346 DG Sbjct: 424 DG 425
>TLE4_MOUSE (Q62441) Transducin-like enhancer protein 4 (Groucho-related| protein 4) (Grg-4) Length = 766 Score = 32.0 bits (71), Expect = 1.1 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Frame = -3 Query: 528 VRNVAPHVNRNAGAVASGPGAGRK-VVGTDSTSVMRFPPVLTRVTVFSGNPLQVSFRHPG 352 + N++P ++ A A A+ GR VVG D MR P + +T G SF Sbjct: 389 LHNISPQMSAAAAAAAAAAAYGRSPVVGFDPHHHMRVPAIPPNLTGIPGGKPAYSFHVSA 448 Query: 351 DG 346 DG Sbjct: 449 DG 450
>TLE4_HUMAN (Q04727) Transducin-like enhancer protein 4| Length = 766 Score = 32.0 bits (71), Expect = 1.1 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Frame = -3 Query: 528 VRNVAPHVNRNAGAVASGPGAGRK-VVGTDSTSVMRFPPVLTRVTVFSGNPLQVSFRHPG 352 + N++P ++ A A A+ GR VVG D MR P + +T G SF Sbjct: 389 LHNISPQMSAAAAAAAAAAAYGRSPVVGFDPHHHMRVPAIPPNLTGIPGGKPAYSFHVSA 448 Query: 351 DG 346 DG Sbjct: 449 DG 450
>MYO9B_HUMAN (Q13459) Myosin-9B (Myosin IXb) (Unconventional myosin-9b)| Length = 2158 Score = 30.0 bits (66), Expect = 4.1 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Frame = -2 Query: 313 LREAAQLXXXXXXXXXXXXVPGVAVHPE---RGASKVEHGRHRDLGRSLPEARQVLP 152 LREA +L PG HPE RGAS +RDL + ++ + LP Sbjct: 698 LREAGRLRAERAEKAAGMSSPGAQSHPEELPRGASTPSEKLYRDLHNQMIKSIKGLP 754
>YAG1_SCHPO (Q09866) Hypothetical WD-repeat protein C12G12.01c in chromosome I| Length = 905 Score = 29.6 bits (65), Expect = 5.4 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = -2 Query: 232 ERGASKVEHGRHRDLGRSLPEARQVLPRCAV 140 +RG SK +H LG+S P Q LP+C+V Sbjct: 802 QRGVSKAGPAKH--LGKSCPHCGQPLPKCSV 830
>DISA_TRIGA (P15503) Putative venom metalloproteinase precursor (EC 3.4.24.-)| [Contains: Disintegrin trigramin-alpha (Platelet aggregation activation inhibitor)] Length = 480 Score = 29.6 bits (65), Expect = 5.4 Identities = 20/63 (31%), Positives = 25/63 (39%) Frame = +2 Query: 239 DCDAGYVSSSYAGVPCASKLCRLAKSVACATSCVGKPSPGCLNDTCSGFPENTVTRVSTG 418 DCD G S A C + C+L C G D CS E TV R++ G Sbjct: 412 DCDCG----SPANPCCDAATCKLIPGAQCGE--------GLCCDQCSFIEEGTVCRIARG 459 Query: 419 GNL 427 +L Sbjct: 460 DDL 462
>STAN_DROME (Q9V5N8) Protocadherin-like wing polarity protein stan precursor| (Protein starry night) (Protein flamingo) Length = 3574 Score = 29.6 bits (65), Expect = 5.4 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%) Frame = +2 Query: 239 DCDAGYVSSSYAGV----PCASKLCRLAKSVACATSC 337 +CD+GYV + A + PCAS +CR S+ C Sbjct: 1989 ECDSGYVGTDCAPICTVRPCASGVCRANTSLPRGYDC 2025
>RL10_HALSA (Q9HSS4) 50S ribosomal protein L10e| Length = 176 Score = 29.3 bits (64), Expect = 7.1 Identities = 17/42 (40%), Positives = 23/42 (54%) Frame = +1 Query: 304 PREECGLRHQLRRQAVPGVSERHL*RVPGEHRHARQHRREPH 429 P+EEC LRH +A + RHL + GE + Q R+ PH Sbjct: 54 PQEECQLRHG-SLEAARLSANRHLIKELGEGNYKMQLRKFPH 94
>CARPV_CANAL (P10977) Vacuolar aspartic protease precursor (EC 3.4.23.-)| (Aspartate protease) (ACP) Length = 419 Score = 29.3 bits (64), Expect = 7.1 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%) Frame = +2 Query: 155 QYLTGFRQRTPQVPVTAVLDLGGASLWV---DC 244 QY T + TP P +LD G ++LWV DC Sbjct: 103 QYFTEIQIGTPGQPFKVILDTGSSNLWVPSQDC 135 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,057,169 Number of Sequences: 219361 Number of extensions: 1093662 Number of successful extensions: 4516 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4166 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4499 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4085413911 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
