ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart26h05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470572.1| Oryza sativa (japonica cultivar-group), predic... 141 2e-30
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 129 7e-27
3gb|AC079633.9|AC079633 Genomic Sequence for Oryza sativa, Nippon... 129 7e-27
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 129 7e-27
5gb|AC125471.3| Oryza sativa (japonica cultivar-group) chromosome... 129 7e-27
6dbj|AK065264.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 7e-27
7gb|AY456696.1| Arthrobacter aurescens strain TC1 plasmid pAA1 at... 44 0.33
8gb|AC123883.10| Mus musculus chromosome 3, clone RP23-461P7, com... 44 0.33
9dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 44 0.33
10gb|AE005001.1| Halobacterium sp. NRC-1 section 32 of 170 of the ... 42 1.3
11gb|AY534123.1|SEG_AY534122S2 Aegilops tauschii transposons Caspa... 40 5.1
12ref|XM_368309.1| Magnaporthe grisea 70-15 chromosome VI hypothet... 40 5.1
13gb|AC104847.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.1
14ref|XM_804386.1| Trypanosoma cruzi strain CL Brener glutathione ... 40 5.1
15ref|XM_805322.1| Trypanosoma cruzi strain CL Brener glutathione ... 40 5.1
16gb|AC136148.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.1
17ref|XM_738033.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 5.1
18emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete ... 40 5.1
19emb|AL606522.6| Mouse DNA sequence from clone RP23-19L22 on chro... 40 5.1
20gb|AC068413.11| Homo sapiens chromosome 8, clone RP11-273I9, com... 40 5.1
21gb|AC108128.2| Homo sapiens chromosome 5 clone RP11-755E13, comp... 40 5.1
22gb|AY061889.1| Lolium perenne cinnamoyl-CoA reductase (CCR1) gen... 40 5.1
23gb|AY061888.1| Lolium perenne cinnamoyl-CoA reductase (CCR1) mRN... 40 5.1
24gb|AC011626.8| Homo sapiens chromosome 8, clone RP11-369K17, com... 40 5.1
25gb|CP000249.1| Frankia sp. CcI3, complete genome 40 5.1
26dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
27gb|AY227672.1| Zea mays genotype Mo17 cinnamoyl-CoA reductase (c... 40 5.1
28gb|AY227671.1| Zea mays genotype F288 cinnamoyl-CoA reductase (c... 40 5.1
29gb|AY227670.1| Zea mays genotype MBS847 cinnamoyl-CoA reductase ... 40 5.1
30gb|AY227669.1| Zea mays genotype F271 cinnamoyl-CoA reductase (c... 40 5.1
31gb|AY227668.1| Zea mays genotype F7025 cinnamoyl-CoA reductase (... 40 5.1
32gb|AY227029.1| Zea mays genotype B73 cinnamoyl-CoA reductase (cc... 40 5.1
33dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.1
34gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.1
35emb|AJ605768.1| Festuca arundinacea partial mRNA for putative ci... 40 5.1
36dbj|AB013394.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 5.1
37emb|Y15069.1|ZMCCR2 Zea mays mRNA for cinnamoyl-CoA reductase 40 5.1
38gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 5.1
39emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 40 5.1
40gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.1
41gb|L39268.1|STMILVBCN Streptomyces avermitilis CU-18 acetolactat... 40 5.1 
>ref|XM_470572.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1026

 Score =  141 bits (71), Expect = 2e-30
 Identities = 146/171 (85%)
 Strand = Plus / Plus

                                                                       
Query: 215 ccgtcgagctcgcctacggcgacgtcggcgacgcgggatccctcgcggccgccttcgacg 274
           |||||||||| || ||||||||||||| ||||| ||  |||||||| |||||||||||| 
Sbjct: 155 ccgtcgagctggcgtacggcgacgtcgccgacgtggagtccctcgccgccgccttcgaca 214

                                                                       
Query: 275 gctgcgacgccgtcttccacgccgccgcgtccgtcgagccgtggctccccaacccctccg 334
           | ||||||||||||||||||| ||||||  |||||||| ||||||| ||| | |||||| 
Sbjct: 215 ggtgcgacgccgtcttccacgtcgccgccgccgtcgaggcgtggctgcccgatccctcca 274

                                                              
Query: 335 tcttcaccgccgtcaatgtgagagggcttgagaatgtgttaaaagcggcca 385
           |||||| | | ||||||||| ||||||| |||||||| || ||||| ||||
Sbjct: 275 tcttcatcacggtcaatgtgggagggctcgagaatgttttgaaagctgcca 325



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 99  ggtgacgggcgcgacggggtacct 122
           ||||||||||||||||||||||||
Sbjct: 12  ggtgacgggcgcgacggggtacct 35
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  129 bits (65), Expect = 7e-27
 Identities = 116/133 (87%)
 Strand = Plus / Plus

                                                                           
Query: 215     ccgtcgagctcgcctacggcgacgtcggcgacgcgggatccctcgcggccgccttcgacg 274
               |||||||||| |||||||| ||||||  ||||| ||| ||||||||  ||||||||||||
Sbjct: 4425900 ccgtcgagctggcctacggggacgtcaccgacgaggggtccctcgccaccgccttcgacg 4425959

                                                                           
Query: 275     gctgcgacgccgtcttccacgccgccgcgtccgtcgagccgtggctccccaacccctccg 334
               | |||||||| |||||||||| ||||||  |||||||||||||||||||| ||||||| |
Sbjct: 4425960 ggtgcgacgcggtcttccacgtcgccgccgccgtcgagccgtggctccccgacccctcgg 4426019

                            
Query: 335     tcttcaccgccgt 347
               | |||||| ||||
Sbjct: 4426020 ttttcaccaccgt 4426032



 Score =  115 bits (58), Expect = 1e-22
 Identities = 109/126 (86%)
 Strand = Plus / Plus

                                                                           
Query: 215     ccgtcgagctcgcctacggcgacgtcggcgacgcgggatccctcgcggccgccttcgacg 274
               |||||||||| || ||||||||||||| ||||| ||  |||||||| |||||||||||| 
Sbjct: 4423870 ccgtcgagctggcgtacggcgacgtcgccgacgtggagtccctcgccgccgccttcgaca 4423929

                                                                           
Query: 275     gctgcgacgccgtcttccacgccgccgcgtccgtcgagccgtggctccccaacccctccg 334
               | ||||||||||||||||||| ||||||  |||||||| ||||||| ||| | |||||| 
Sbjct: 4423930 ggtgcgacgccgtcttccacgtcgccgccgccgtcgaggcgtggctgcccgatccctcca 4423989

                     
Query: 335     tcttca 340
               ||||||
Sbjct: 4423990 tcttca 4423995



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                        
Query: 82      ggcgggatgagggtggtggtgacgggcgcgacggggtacct 122
               ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 4425767 ggcggcatgagggtggtggtgacgggcgcgacggggtacct 4425807



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                        
Query: 82      ggcgggatgagggtggtggtgacgggcgcgacggggtacct 122
               ||||| |||||| | | ||||||||||||||||||||||||
Sbjct: 4423710 ggcggcatgaggatcgcggtgacgggcgcgacggggtacct 4423750



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 346     gtcaatgtgagagggcttgagaatgtgtt 374
               |||||||||||||| || |||||||||||
Sbjct: 4426312 gtcaatgtgagaggactcgagaatgtgtt 4426340
to top
>gb|AC079633.9|AC079633 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
           OSJNBa0032G08, from Chromosome 3, complete sequence
          Length = 122052

 Score =  129 bits (65), Expect = 7e-27
 Identities = 116/133 (87%)
 Strand = Plus / Minus

                                                                       
Query: 215 ccgtcgagctcgcctacggcgacgtcggcgacgcgggatccctcgcggccgccttcgacg 274
           |||||||||| |||||||| ||||||  ||||| ||| ||||||||  ||||||||||||
Sbjct: 597 ccgtcgagctggcctacggggacgtcaccgacgaggggtccctcgccaccgccttcgacg 538

                                                                       
Query: 275 gctgcgacgccgtcttccacgccgccgcgtccgtcgagccgtggctccccaacccctccg 334
           | |||||||| |||||||||| ||||||  |||||||||||||||||||| ||||||| |
Sbjct: 537 ggtgcgacgcggtcttccacgtcgccgccgccgtcgagccgtggctccccgacccctcgg 478

                        
Query: 335 tcttcaccgccgt 347
           | |||||| ||||
Sbjct: 477 ttttcaccaccgt 465



 Score =  115 bits (58), Expect = 1e-22
 Identities = 109/126 (86%)
 Strand = Plus / Minus

                                                                        
Query: 215  ccgtcgagctcgcctacggcgacgtcggcgacgcgggatccctcgcggccgccttcgacg 274
            |||||||||| || ||||||||||||| ||||| ||  |||||||| |||||||||||| 
Sbjct: 2627 ccgtcgagctggcgtacggcgacgtcgccgacgtggagtccctcgccgccgccttcgaca 2568

                                                                        
Query: 275  gctgcgacgccgtcttccacgccgccgcgtccgtcgagccgtggctccccaacccctccg 334
            | ||||||||||||||||||| ||||||  |||||||| ||||||| ||| | |||||| 
Sbjct: 2567 ggtgcgacgccgtcttccacgtcgccgccgccgtcgaggcgtggctgcccgatccctcca 2508

                  
Query: 335  tcttca 340
            ||||||
Sbjct: 2507 tcttca 2502



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 40/41 (97%)
 Strand = Plus / Minus

                                                    
Query: 82  ggcgggatgagggtggtggtgacgggcgcgacggggtacct 122
           ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 730 ggcggcatgagggtggtggtgacgggcgcgacggggtacct 690



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 82   ggcgggatgagggtggtggtgacgggcgcgacggggtacct 122
            ||||| |||||| | | ||||||||||||||||||||||||
Sbjct: 2787 ggcggcatgaggatcgcggtgacgggcgcgacggggtacct 2747



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 346 gtcaatgtgagagggcttgagaatgtgtt 374
           |||||||||||||| || |||||||||||
Sbjct: 185 gtcaatgtgagaggactcgagaatgtgtt 157
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  129 bits (65), Expect = 7e-27
 Identities = 116/133 (87%)
 Strand = Plus / Plus

                                                                           
Query: 215     ccgtcgagctcgcctacggcgacgtcggcgacgcgggatccctcgcggccgccttcgacg 274
               |||||||||| |||||||| ||||||  ||||| ||| ||||||||  ||||||||||||
Sbjct: 4426015 ccgtcgagctggcctacggggacgtcaccgacgaggggtccctcgccaccgccttcgacg 4426074

                                                                           
Query: 275     gctgcgacgccgtcttccacgccgccgcgtccgtcgagccgtggctccccaacccctccg 334
               | |||||||| |||||||||| ||||||  |||||||||||||||||||| ||||||| |
Sbjct: 4426075 ggtgcgacgcggtcttccacgtcgccgccgccgtcgagccgtggctccccgacccctcgg 4426134

                            
Query: 335     tcttcaccgccgt 347
               | |||||| ||||
Sbjct: 4426135 ttttcaccaccgt 4426147



 Score =  115 bits (58), Expect = 1e-22
 Identities = 109/126 (86%)
 Strand = Plus / Plus

                                                                           
Query: 215     ccgtcgagctcgcctacggcgacgtcggcgacgcgggatccctcgcggccgccttcgacg 274
               |||||||||| || ||||||||||||| ||||| ||  |||||||| |||||||||||| 
Sbjct: 4423985 ccgtcgagctggcgtacggcgacgtcgccgacgtggagtccctcgccgccgccttcgaca 4424044

                                                                           
Query: 275     gctgcgacgccgtcttccacgccgccgcgtccgtcgagccgtggctccccaacccctccg 334
               | ||||||||||||||||||| ||||||  |||||||| ||||||| ||| | |||||| 
Sbjct: 4424045 ggtgcgacgccgtcttccacgtcgccgccgccgtcgaggcgtggctgcccgatccctcca 4424104

                     
Query: 335     tcttca 340
               ||||||
Sbjct: 4424105 tcttca 4424110



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                        
Query: 82      ggcgggatgagggtggtggtgacgggcgcgacggggtacct 122
               ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 4425882 ggcggcatgagggtggtggtgacgggcgcgacggggtacct 4425922



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                        
Query: 82      ggcgggatgagggtggtggtgacgggcgcgacggggtacct 122
               ||||| |||||| | | ||||||||||||||||||||||||
Sbjct: 4423825 ggcggcatgaggatcgcggtgacgggcgcgacggggtacct 4423865



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 346     gtcaatgtgagagggcttgagaatgtgtt 374
               |||||||||||||| || |||||||||||
Sbjct: 4426427 gtcaatgtgagaggactcgagaatgtgtt 4426455
to top
>gb|AC125471.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0042J17, complete sequence
          Length = 171442

 Score =  129 bits (65), Expect = 7e-27
 Identities = 116/133 (87%)
 Strand = Plus / Plus

                                                                         
Query: 215   ccgtcgagctcgcctacggcgacgtcggcgacgcgggatccctcgcggccgccttcgacg 274
             |||||||||| |||||||| ||||||  ||||| ||| ||||||||  ||||||||||||
Sbjct: 31192 ccgtcgagctggcctacggggacgtcaccgacgaggggtccctcgccaccgccttcgacg 31251

                                                                         
Query: 275   gctgcgacgccgtcttccacgccgccgcgtccgtcgagccgtggctccccaacccctccg 334
             | |||||||| |||||||||| ||||||  |||||||||||||||||||| ||||||| |
Sbjct: 31252 ggtgcgacgcggtcttccacgtcgccgccgccgtcgagccgtggctccccgacccctcgg 31311

                          
Query: 335   tcttcaccgccgt 347
             | |||||| ||||
Sbjct: 31312 ttttcaccaccgt 31324



 Score =  115 bits (58), Expect = 1e-22
 Identities = 109/126 (86%)
 Strand = Plus / Plus

                                                                         
Query: 215   ccgtcgagctcgcctacggcgacgtcggcgacgcgggatccctcgcggccgccttcgacg 274
             |||||||||| || ||||||||||||| ||||| ||  |||||||| |||||||||||| 
Sbjct: 29162 ccgtcgagctggcgtacggcgacgtcgccgacgtggagtccctcgccgccgccttcgaca 29221

                                                                         
Query: 275   gctgcgacgccgtcttccacgccgccgcgtccgtcgagccgtggctccccaacccctccg 334
             | ||||||||||||||||||| ||||||  |||||||| ||||||| ||| | |||||| 
Sbjct: 29222 ggtgcgacgccgtcttccacgtcgccgccgccgtcgaggcgtggctgcccgatccctcca 29281

                   
Query: 335   tcttca 340
             ||||||
Sbjct: 29282 tcttca 29287



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                      
Query: 82    ggcgggatgagggtggtggtgacgggcgcgacggggtacct 122
             ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 31059 ggcggcatgagggtggtggtgacgggcgcgacggggtacct 31099



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                      
Query: 82    ggcgggatgagggtggtggtgacgggcgcgacggggtacct 122
             ||||| |||||| | | ||||||||||||||||||||||||
Sbjct: 29002 ggcggcatgaggatcgcggtgacgggcgcgacggggtacct 29042



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 346   gtcaatgtgagagggcttgagaatgtgtt 374
             |||||||||||||| || |||||||||||
Sbjct: 31604 gtcaatgtgagaggactcgagaatgtgtt 31632
to top
>dbj|AK065264.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002K08, full
           insert sequence
          Length = 1688

 Score =  129 bits (65), Expect = 7e-27
 Identities = 116/133 (87%)
 Strand = Plus / Plus

                                                                       
Query: 215 ccgtcgagctcgcctacggcgacgtcggcgacgcgggatccctcgcggccgccttcgacg 274
           |||||||||| |||||||| ||||||  ||||| ||| ||||||||  ||||||||||||
Sbjct: 215 ccgtcgagctggcctacggggacgtcaccgacgaggggtccctcgccaccgccttcgacg 274

                                                                       
Query: 275 gctgcgacgccgtcttccacgccgccgcgtccgtcgagccgtggctccccaacccctccg 334
           | |||||||| |||||||||| ||||||  |||||||||||||||||||| ||||||| |
Sbjct: 275 ggtgcgacgcggtcttccacgtcgccgccgccgtcgagccgtggctccccgacccctcgg 334

                        
Query: 335 tcttcaccgccgt 347
           | |||||| ||||
Sbjct: 335 ttttcaccaccgt 347



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                    
Query: 82  ggcgggatgagggtggtggtgacgggcgcgacggggtacct 122
           ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 82  ggcggcatgagggtggtggtgacgggcgcgacggggtacct 122



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 346 gtcaatgtgagagggcttgagaatgtgtt 374
           |||||||||||||| || |||||||||||
Sbjct: 627 gtcaatgtgagaggactcgagaatgtgtt 655
to top
>gb|AY456696.1| Arthrobacter aurescens strain TC1 plasmid pAA1 atrazine catabolic
             region, partial sequence
          Length = 161264

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 290   tccacgccgccgcgtccgtcgagccg 315
             |||||| |||||||||||||||||||
Sbjct: 55604 tccacgacgccgcgtccgtcgagccg 55579
to top
>gb|AC123883.10| Mus musculus chromosome 3, clone RP23-461P7, complete sequence
          Length = 199554

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 16     gctggatcgatcggctgccctgctgctgct 45
              |||||| ||||||||||||| |||||||||
Sbjct: 103766 gctggaccgatcggctgccccgctgctgct 103795
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 93      ggtggtggtgacgggcgcgacg 114
               ||||||||||||||||||||||
Sbjct: 5240373 ggtggtggtgacgggcgcgacg 5240352
to top
>gb|AE005001.1| Halobacterium sp. NRC-1 section 32 of 170 of the complete genome
          Length = 10670

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 92   gggtggtggtgacgggcgcga 112
            |||||||||||||||||||||
Sbjct: 6566 gggtggtggtgacgggcgcga 6546
to top
>gb|AY534123.1|SEG_AY534122S2 Aegilops tauschii transposons Caspar, XJ, Angela, and XJ, complete
              sequence; LRR protein WM1.7 (WM1.7) and LRR protein WM1.12
              (WM1.12) genes, complete cds; transposons Ophelia2,
              Angela3s, and XJ3, complete sequence; LRR protein WM1.3
              (WM1.3) gene, complete cds; Stowaway MITE, transposons XJ1,
              Jody, Angela, and XJ and Stowaway MITE, complete sequence;
              LRR protein WM1.2 (WM1.2) and LLR protein WM1.1 (WM1.1)
              genes, complete cds; transposons XJ, XA, Angela, and Fred
              and WM1.11 gene, complete sequence; RPM1-like sequence and
              LRR protein WM1.10 (WM1.10) genes, complete cds; and
              transposon XJ, complete sequence
          Length = 198649

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 332    ccgtcttcaccgccgtcaat 351
              ||||||||||||||||||||
Sbjct: 143912 ccgtcttcaccgccgtcaat 143931
to top
>ref|XM_368309.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
           (MG00935.4) partial mRNA
          Length = 1329

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 230 acggcgacgtcggcgacgcgggat 253
           ||||||||||||||| ||||||||
Sbjct: 959 acggcgacgtcggcgtcgcgggat 936
to top
>gb|AC104847.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0480H08,
              complete sequence
          Length = 156301

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 213    cgccgtcgagctcgcctacg 232
              ||||||||||||||||||||
Sbjct: 107264 cgccgtcgagctcgcctacg 107245
to top
>ref|XM_804386.1| Trypanosoma cruzi strain CL Brener glutathione synthetase
           (Tc00.1047053506659.30) partial mRNA
          Length = 1608

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 287 tcttccacgccgccgcgtcc 306
           ||||||||||||||||||||
Sbjct: 421 tcttccacgccgccgcgtcc 402
to top
>ref|XM_805322.1| Trypanosoma cruzi strain CL Brener glutathione synthetase
           (Tc00.1047053508865.10) partial mRNA
          Length = 1608

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 287 tcttccacgccgccgcgtcc 306
           ||||||||||||||||||||
Sbjct: 421 tcttccacgccgccgcgtcc 402
to top
>gb|AC136148.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
            OSJNBa0029K08, complete sequence
          Length = 136687

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 213  cgccgtcgagctcgcctacg 232
            ||||||||||||||||||||
Sbjct: 7542 cgccgtcgagctcgcctacg 7523
to top
>ref|XM_738033.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000486.02.0)
            partial mRNA
          Length = 3045

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 363  tgagaatgtgttaaaagcgg 382
            ||||||||||||||||||||
Sbjct: 2778 tgagaatgtgttaaaagcgg 2797
to top
>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29
          Length = 308050

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    agggtggtggtgacgggcgc 110
             ||||||||||||||||||||
Sbjct: 22895 agggtggtggtgacgggcgc 22876
to top
>emb|AL606522.6| Mouse DNA sequence from clone RP23-19L22 on chromosome 11 Contains the
             Actr2 gene for ARP2 actin-related protein 2 homolog
             (yeast), a small nuclear ribonucleoprotein polypeptide G
             (Snrpg) pseudogene, two novel genes, the Rab1 gene for
             RAB1, member RAS oncogene family and three CpG islands,
             complete sequence
          Length = 203071

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     tggttggttggcttggctgg 20
             ||||||||||||||||||||
Sbjct: 30620 tggttggttggcttggctgg 30601
to top
>gb|AC068413.11| Homo sapiens chromosome 8, clone RP11-273I9, complete sequence
          Length = 157865

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 349    aatgtgagagggcttgagaa 368
              ||||||||||||||||||||
Sbjct: 146283 aatgtgagagggcttgagaa 146302
to top
>gb|AC108128.2| Homo sapiens chromosome 5 clone RP11-755E13, complete sequence
          Length = 119387

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 360   gcttgagaatgtgttaaaag 379
             ||||||||||||||||||||
Sbjct: 95157 gcttgagaatgtgttaaaag 95138
to top
>gb|AY061889.1| Lolium perenne cinnamoyl-CoA reductase (CCR1) gene, complete cds
          Length = 5799

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 264 cgccttcgacggctgcgacgccgtcttccacgccgc 299
           |||| ||||||||||| ||| |||||||||| ||||
Sbjct: 714 cgccatcgacggctgccacggcgtcttccacaccgc 749
to top
>gb|AY061888.1| Lolium perenne cinnamoyl-CoA reductase (CCR1) mRNA, complete cds
          Length = 1395

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 264 cgccttcgacggctgcgacgccgtcttccacgccgc 299
           |||| ||||||||||| ||| |||||||||| ||||
Sbjct: 419 cgccatcgacggctgccacggcgtcttccacaccgc 454
to top
>gb|AC011626.8| Homo sapiens chromosome 8, clone RP11-369K17, complete sequence
          Length = 184547

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 349    aatgtgagagggcttgagaa 368
              ||||||||||||||||||||
Sbjct: 136826 aatgtgagagggcttgagaa 136807
to top
>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 189    cggcgacgcgtccggcctgc 208
              ||||||||||||||||||||
Sbjct: 919912 cggcgacgcgtccggcctgc 919893



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 201   cggcctgccggacgccgtcgagctcgcc 228
             |||||||||||||| ||||||| |||||
Sbjct: 13349 cggcctgccggacgtcgtcgagttcgcc 13376
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 213      cgccgtcgagctcgcctacg 232
                ||||||||||||||||||||
Sbjct: 21349792 cgccgtcgagctcgcctacg 21349773
to top
>gb|AY227672.1| Zea mays genotype Mo17 cinnamoyl-CoA reductase (ccr2) gene, promoter
            region, exons 1 through 5, and complete cds
          Length = 2937

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 273  cggctgcgacgccgtcttccacgccgcc 300
            |||||| |||| ||||||||||||||||
Sbjct: 1525 cggctgtgacggcgtcttccacgccgcc 1552
to top
>gb|AY227671.1| Zea mays genotype F288 cinnamoyl-CoA reductase (ccr2) gene, promoter
            region, exons 1 through 5, and complete cds
          Length = 2942

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 273  cggctgcgacgccgtcttccacgccgcc 300
            |||||| |||| ||||||||||||||||
Sbjct: 1531 cggctgtgacggcgtcttccacgccgcc 1558
to top
>gb|AY227670.1| Zea mays genotype MBS847 cinnamoyl-CoA reductase (ccr2) gene,
            promoter region, exons 1 through 5, and complete cds
          Length = 2937

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 273  cggctgcgacgccgtcttccacgccgcc 300
            |||||| |||| ||||||||||||||||
Sbjct: 1525 cggctgtgacggcgtcttccacgccgcc 1552
to top
>gb|AY227669.1| Zea mays genotype F271 cinnamoyl-CoA reductase (ccr2) gene, promoter
            region, exons 1 through 5, and complete cds
          Length = 2937

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 273  cggctgcgacgccgtcttccacgccgcc 300
            |||||| |||| ||||||||||||||||
Sbjct: 1525 cggctgtgacggcgtcttccacgccgcc 1552
to top
>gb|AY227668.1| Zea mays genotype F7025 cinnamoyl-CoA reductase (ccr2) gene, promoter
            region, exons 1 through 5, and complete cds
          Length = 2937

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 273  cggctgcgacgccgtcttccacgccgcc 300
            |||||| |||| ||||||||||||||||
Sbjct: 1486 cggctgtgacggcgtcttccacgccgcc 1513
to top
>gb|AY227029.1| Zea mays genotype B73 cinnamoyl-CoA reductase (ccr2) gene, promoter
            region, exons 1 through 5, and complete cds
          Length = 2966

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 273  cggctgcgacgccgtcttccacgccgcc 300
            |||||| |||| ||||||||||||||||
Sbjct: 1515 cggctgtgacggcgtcttccacgccgcc 1542
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 91      agggtggtggtgacgggcgc 110
               ||||||||||||||||||||
Sbjct: 3355499 agggtggtggtgacgggcgc 3355518
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 200     ccggcctgccggacgccgtc 219
               ||||||||||||||||||||
Sbjct: 2598847 ccggcctgccggacgccgtc 2598866
to top
>emb|AJ605768.1| Festuca arundinacea partial mRNA for putative cinnamoyl coA
           reductase (ccr gene)
          Length = 311

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 264 cgccttcgacggctgcgacgccgtcttccacgccgc 299
           |||| ||||||||||| ||| |||||||||| ||||
Sbjct: 36  cgccgtcgacggctgccacggcgtcttccacaccgc 71
to top
>dbj|AB013394.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQD22
          Length = 85661

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     tggttggttggcttggctgg 20
             ||||||||||||||||||||
Sbjct: 19599 tggttggttggcttggctgg 19580
to top
>emb|Y15069.1|ZMCCR2 Zea mays mRNA for cinnamoyl-CoA reductase
          Length = 1468

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 273 cggctgcgacgccgtcttccacgccgcc 300
           |||||| |||| ||||||||||||||||
Sbjct: 383 cggctgtgacggcgtcttccacgccgcc 410
to top
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 224     tcgcctacggcgacgtcggcgacg 247
               |||||| |||||||||||||||||
Sbjct: 4711464 tcgcctgcggcgacgtcggcgacg 4711441
to top
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 269     tcgacggctgcgacgccgtc 288
               ||||||||||||||||||||
Sbjct: 1373472 tcgacggctgcgacgccgtc 1373491
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 213      cgccgtcgagctcgcctacg 232
                ||||||||||||||||||||
Sbjct: 21659991 cgccgtcgagctcgcctacg 21659972
to top
>gb|L39268.1|STMILVBCN Streptomyces avermitilis CU-18 acetolactate synthase (ilvB),
            acetolactate synthase small subunit (ilvN), acetolactate
            synthase, acetohydroxy acid isomeroreductase (ilvC)
            genes, complete cds
          Length = 4050

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 91   agggtggtggtgacgggcgc 110
            ||||||||||||||||||||
Sbjct: 1226 agggtggtggtgacgggcgc 1207


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,359,021
Number of Sequences: 3902068
Number of extensions: 2359021
Number of successful extensions: 50223
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49034
Number of HSP's gapped (non-prelim): 1189
length of query: 385
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 363
effective length of database: 17,147,199,772
effective search space: 6224433517236
effective search space used: 6224433517236
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top