ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart26h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y4WH_RHISN (P55686) Hypothetical 15.6 kDa protein y4wH 33 0.52
2ZDHC8_MOUSE (Q5Y5T5) Probable palmitoyltransferase ZDHHC8 (EC 2.... 29 9.7
3ZDHC8_PANTR (Q2THX0) Probable palmitoyltransferase ZDHHC8 (EC 2.... 29 9.7
4ZDHC8_HUMAN (Q9ULC8) Probable palmitoyltransferase ZDHHC8 (EC 2.... 29 9.7
5CH18_DROSU (P24514) Chorion protein S18 29 9.7
6PDLI2_MACFA (Q9GKU1) PDZ and LIM domain protein 2 29 9.7

>Y4WH_RHISN (P55686) Hypothetical 15.6 kDa protein y4wH|
          Length = 145

 Score = 33.1 bits (74), Expect = 0.52
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 360 TNATCAFIQDYQNCMKHGRPSLDFLQWRWRPDGGPGCELARFDAAHFFR 506
           ++ T AF   +    + G+P + FL++R RPDGG    +  F+   + R
Sbjct: 76  SDGTLAFADQHFTIDRDGKPVIQFLRYRIRPDGGAEFTMVVFNVPSYER 124



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>ZDHC8_MOUSE (Q5Y5T5) Probable palmitoyltransferase ZDHHC8 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 8) (DHHC-8)
          Length = 762

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 517 PRTSRKKCAASKRASSQPGPPSGRHLHCRKSRLGLP 410
           PRTS     A +  ++ PGP  G   H   +R GLP
Sbjct: 636 PRTSSSSLQADQANNNAPGPRPGSGSHRSPARQGLP 671



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>ZDHC8_PANTR (Q2THX0) Probable palmitoyltransferase ZDHHC8 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 8) (DHHC-8)
          Length = 765

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 517 PRTSRKKCAASKRASSQPGPPSGRHLHCRKSRLGLP 410
           PRTS     A + +S+ PGP      H   +R GLP
Sbjct: 639 PRTSSSSLQADQASSNAPGPRPSSGSHRSPARQGLP 674



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>ZDHC8_HUMAN (Q9ULC8) Probable palmitoyltransferase ZDHHC8 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 8) (DHHC-8) (Zinc
           finger protein 378)
          Length = 765

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 517 PRTSRKKCAASKRASSQPGPPSGRHLHCRKSRLGLP 410
           PRTS     A + +S+ PGP      H   +R GLP
Sbjct: 639 PRTSSSSLQADQASSNAPGPRPSSGSHRSPARQGLP 674



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>CH18_DROSU (P24514) Chorion protein S18|
          Length = 174

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +2

Query: 191 PPLPRSGHALAPLPRASPIAGHPLVVR 271
           PP+ R   ALA L  A+P AG PLV R
Sbjct: 95  PPVDREAIALAKLALAAPSAGGPLVWR 121



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>PDLI2_MACFA (Q9GKU1) PDZ and LIM domain protein 2|
          Length = 352

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +2

Query: 155 HCQDHTSFRSRCPP----LPRSGHALAPLPRASPIAGHPLVVR 271
           H + H+S RS         PR+G   +P P +SP+AG   + R
Sbjct: 111 HTESHSSLRSSYSSPTSLSPRAGSPFSPPPFSSPLAGEAAISR 153


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,620,568
Number of Sequences: 219361
Number of extensions: 1154859
Number of successful extensions: 3886
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3886
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4315578075
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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