ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart26h02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_185777.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1428 Score = 113 bits (57), Expect = 6e-22 Identities = 148/177 (83%), Gaps = 6/177 (3%) Strand = Plus / Plus Query: 338 cgccggcgcgctgccgcattacaccaacgcgacgtgcgccttcatccaggactaccagaa 397 |||||||||| |||| | ||||||||||||||||||| ||||||||| |||||||||| Sbjct: 345 cgccggcgcggcgccgtactacaccaacgcgacgtgcgggttcatccagaactaccagaa 404 Query: 398 ctgcatgaagcacggcaggcccagcctcgatttcctgcagtggaggtggcgcccc---ga 454 ||||||||||||||| ||||||||| | || ||| ||| |||| ||||||| ||| || Sbjct: 405 ctgcatgaagcacgggaggcccagcatggagttcttgcggtggcggtggcgtcccggtga 464 Query: 455 cggcggcccgggctgcga---gctcgcgcgcttcgacgcggcgcacttcttccggct 508 ||||||| ||| ||||| ||||| || ||||||||||||| ||||||||||| Sbjct: 465 cggcggcgaggggtgcgagccgctcgggccgttcgacgcggcgcggttcttccggct 521
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 113 bits (57), Expect = 6e-22 Identities = 148/177 (83%), Gaps = 6/177 (3%) Strand = Plus / Plus Query: 338 cgccggcgcgctgccgcattacaccaacgcgacgtgcgccttcatccaggactaccagaa 397 |||||||||| |||| | ||||||||||||||||||| ||||||||| |||||||||| Sbjct: 9265102 cgccggcgcggcgccgtactacaccaacgcgacgtgcgggttcatccagaactaccagaa 9265161 Query: 398 ctgcatgaagcacggcaggcccagcctcgatttcctgcagtggaggtggcgcccc---ga 454 ||||||||||||||| ||||||||| | || ||| ||| |||| ||||||| ||| || Sbjct: 9265162 ctgcatgaagcacgggaggcccagcatggagttcttgcggtggcggtggcgtcccggtga 9265221 Query: 455 cggcggcccgggctgcga---gctcgcgcgcttcgacgcggcgcacttcttccggct 508 ||||||| ||| ||||| ||||| || ||||||||||||| ||||||||||| Sbjct: 9265222 cggcggcgaggggtgcgagccgctcgggccgttcgacgcggcgcggttcttccggct 9265278 Score = 48.1 bits (24), Expect = 0.030 Identities = 75/92 (81%) Strand = Plus / Plus Query: 357 tacaccaacgcgacgtgcgccttcatccaggactaccagaactgcatgaagcacggcagg 416 ||||| ||||||||||||| |||||||| ||||||||||||||||| |||| ||| Sbjct: 9232633 tacacgaacgcgacgtgcggggagatccaggagcaccagaactgcatgaagtacgggagg 9232692 Query: 417 cccagcctcgatttcctgcagtggaggtggcg 448 || ||||| ||||||| |||| ||||||| Sbjct: 9232693 ccggacctcgggttcctgcggtggcggtggcg 9232724 Score = 48.1 bits (24), Expect = 0.030 Identities = 57/68 (83%) Strand = Plus / Minus Query: 381 atccaggactaccagaactgcatgaagcacggcaggcccagcctcgatttcctgcagtgg 440 |||||||| ||||||||||||||||| |||| |||||| ||||| ||||| | |||| Sbjct: 9220009 atccaggagcaccagaactgcatgaagtacgggaggcccgacctcgggttcctccggtgg 9219950 Query: 441 aggtggcg 448 ||||||| Sbjct: 9219949 cggtggcg 9219942 Score = 46.1 bits (23), Expect = 0.12 Identities = 59/71 (83%) Strand = Plus / Plus Query: 381 atccaggactaccagaactgcatgaagcacggcaggcccagcctcgatttcctgcagtgg 440 |||||||| ||||||||||||||||| ||||| | ||| ||||| ||||| | |||| Sbjct: 9257926 atccaggagcaccagaactgcatgaagtacggccgccccgacctcggcttcctccggtgg 9257985 Query: 441 aggtggcgccc 451 |||||||||| Sbjct: 9257986 cggtggcgccc 9257996 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 466 gctgcgagctcgcgcgcttcgacgcggcg 494 ||||||||||| |||| |||||||||||| Sbjct: 9258002 gctgcgagctcccgcggttcgacgcggcg 9258030 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 466 gctgcgagctcgcgcgcttcgacgcggcg 494 ||||||||||| |||| |||||||||||| Sbjct: 9219933 gctgcgagctcccgcggttcgacgcggcg 9219905 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 tttccgctctcgctgccctc 194 |||||||||||||||||||| Sbjct: 17892703 tttccgctctcgctgccctc 17892722 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ggtggcgccccgacggcggc 461 |||||||||||||||||||| Sbjct: 7012217 ggtggcgccccgacggcggc 7012198
>dbj|AP005813.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0676F10 Length = 142510 Score = 113 bits (57), Expect = 6e-22 Identities = 148/177 (83%), Gaps = 6/177 (3%) Strand = Plus / Plus Query: 338 cgccggcgcgctgccgcattacaccaacgcgacgtgcgccttcatccaggactaccagaa 397 |||||||||| |||| | ||||||||||||||||||| ||||||||| |||||||||| Sbjct: 32443 cgccggcgcggcgccgtactacaccaacgcgacgtgcgggttcatccagaactaccagaa 32502 Query: 398 ctgcatgaagcacggcaggcccagcctcgatttcctgcagtggaggtggcgcccc---ga 454 ||||||||||||||| ||||||||| | || ||| ||| |||| ||||||| ||| || Sbjct: 32503 ctgcatgaagcacgggaggcccagcatggagttcttgcggtggcggtggcgtcccggtga 32562 Query: 455 cggcggcccgggctgcga---gctcgcgcgcttcgacgcggcgcacttcttccggct 508 ||||||| ||| ||||| ||||| || ||||||||||||| ||||||||||| Sbjct: 32563 cggcggcgaggggtgcgagccgctcgggccgttcgacgcggcgcggttcttccggct 32619 Score = 46.1 bits (23), Expect = 0.12 Identities = 59/71 (83%) Strand = Plus / Plus Query: 381 atccaggactaccagaactgcatgaagcacggcaggcccagcctcgatttcctgcagtgg 440 |||||||| ||||||||||||||||| ||||| | ||| ||||| ||||| | |||| Sbjct: 25267 atccaggagcaccagaactgcatgaagtacggccgccccgacctcggcttcctccggtgg 25326 Query: 441 aggtggcgccc 451 |||||||||| Sbjct: 25327 cggtggcgccc 25337 Score = 44.1 bits (22), Expect = 0.47 Identities = 49/58 (84%) Strand = Plus / Plus Query: 391 accagaactgcatgaagcacggcaggcccagcctcgatttcctgcagtggaggtggcg 448 ||||||||||||||||| |||| ||||| ||||| ||||||| |||| ||||||| Sbjct: 8 accagaactgcatgaagtacgggaggccggacctcgggttcctgcggtggcggtggcg 65 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 466 gctgcgagctcgcgcgcttcgacgcggcg 494 ||||||||||| |||| |||||||||||| Sbjct: 25343 gctgcgagctcccgcggttcgacgcggcg 25371
>dbj|AK106489.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-A03, full insert sequence Length = 1562 Score = 113 bits (57), Expect = 6e-22 Identities = 148/177 (83%), Gaps = 6/177 (3%) Strand = Plus / Plus Query: 338 cgccggcgcgctgccgcattacaccaacgcgacgtgcgccttcatccaggactaccagaa 397 |||||||||| |||| | ||||||||||||||||||| ||||||||| |||||||||| Sbjct: 326 cgccggcgcggcgccgtactacaccaacgcgacgtgcgggttcatccagaactaccagaa 385 Query: 398 ctgcatgaagcacggcaggcccagcctcgatttcctgcagtggaggtggcgcccc---ga 454 ||||||||||||||| ||||||||| | || ||| ||| |||| ||||||| ||| || Sbjct: 386 ctgcatgaagcacgggaggcccagcatggagttcttgcggtggcggtggcgtcccggtga 445 Query: 455 cggcggcccgggctgcga---gctcgcgcgcttcgacgcggcgcacttcttccggct 508 ||||||| ||| ||||| ||||| || ||||||||||||| ||||||||||| Sbjct: 446 cggcggcgaggggtgcgagccgctcgggccgttcgacgcggcgcggttcttccggct 502
>ref|XM_467595.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1551 Score = 48.1 bits (24), Expect = 0.030 Identities = 51/60 (85%) Strand = Plus / Plus Query: 368 gacgtgcgccttcatccaggactaccagaactgcatgaagcacggcaggcccagcctcga 427 ||||||| | |||||| | ||| ||||||||||||||||| ||||| ||| |||||||| Sbjct: 552 gacgtgcccgttcatcgacgaccaccagaactgcatgaagttcggcaagccgagcctcga 611
>ref|NM_192402.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1182 Score = 48.1 bits (24), Expect = 0.030 Identities = 48/56 (85%) Strand = Plus / Plus Query: 350 gccgcattacaccaacgcgacgtgcgccttcatccaggactaccagaactgcatga 405 |||||| ||||||||| ||| ||| ||| ||||||||| ||||||||||||||| Sbjct: 198 gccgcagtacaccaacctgacctgctcctacatccaggagcaccagaactgcatga 253
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 48.1 bits (24), Expect = 0.030 Identities = 51/60 (85%) Strand = Plus / Plus Query: 368 gacgtgcgccttcatccaggactaccagaactgcatgaagcacggcaggcccagcctcga 427 ||||||| | |||||| | ||| ||||||||||||||||| ||||| ||| |||||||| Sbjct: 30361756 gacgtgcccgttcatcgacgaccaccagaactgcatgaagttcggcaagccgagcctcga 30361815 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 191 cctcctcttcctcgcagcggccac 214 |||||||||||||||||| ||||| Sbjct: 22353190 cctcctcttcctcgcagccgccac 22353213
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 48.1 bits (24), Expect = 0.030 Identities = 48/56 (85%) Strand = Plus / Minus Query: 350 gccgcattacaccaacgcgacgtgcgccttcatccaggactaccagaactgcatga 405 |||||| ||||||||| ||| ||| ||| ||||||||| ||||||||||||||| Sbjct: 26409243 gccgcagtacaccaacctgacctgctcctacatccaggagcaccagaactgcatga 26409188 Score = 40.1 bits (20), Expect = 7.4 Identities = 59/72 (81%) Strand = Plus / Minus Query: 381 atccaggactaccagaactgcatgaagcacggcaggcccagcctcgatttcctgcagtgg 440 |||||||| ||||||||||| | ||| ||||| | ||| |||||| ||||| ||||| Sbjct: 26396240 atccaggagcaccagaactgcctcaagtacggccgccccgacctcgaattcctcaagtgg 26396181 Query: 441 aggtggcgcccc 452 ||||||||||| Sbjct: 26396180 cggtggcgcccc 26396169
>dbj|AP003710.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0032K15 Length = 126195 Score = 48.1 bits (24), Expect = 0.030 Identities = 48/56 (85%) Strand = Plus / Minus Query: 350 gccgcattacaccaacgcgacgtgcgccttcatccaggactaccagaactgcatga 405 |||||| ||||||||| ||| ||| ||| ||||||||| ||||||||||||||| Sbjct: 83108 gccgcagtacaccaacctgacctgctcctacatccaggagcaccagaactgcatga 83053 Score = 40.1 bits (20), Expect = 7.4 Identities = 59/72 (81%) Strand = Plus / Minus Query: 381 atccaggactaccagaactgcatgaagcacggcaggcccagcctcgatttcctgcagtgg 440 |||||||| ||||||||||| | ||| ||||| | ||| |||||| ||||| ||||| Sbjct: 70105 atccaggagcaccagaactgcctcaagtacggccgccccgacctcgaattcctcaagtgg 70046 Query: 441 aggtggcgcccc 452 ||||||||||| Sbjct: 70045 cggtggcgcccc 70034
>dbj|AP003491.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0662B01 Length = 155913 Score = 48.1 bits (24), Expect = 0.030 Identities = 75/92 (81%) Strand = Plus / Plus Query: 357 tacaccaacgcgacgtgcgccttcatccaggactaccagaactgcatgaagcacggcagg 416 ||||| ||||||||||||| |||||||| ||||||||||||||||| |||| ||| Sbjct: 126655 tacacgaacgcgacgtgcggggagatccaggagcaccagaactgcatgaagtacgggagg 126714 Query: 417 cccagcctcgatttcctgcagtggaggtggcg 448 || ||||| ||||||| |||| ||||||| Sbjct: 126715 ccggacctcgggttcctgcggtggcggtggcg 126746 Score = 48.1 bits (24), Expect = 0.030 Identities = 57/68 (83%) Strand = Plus / Minus Query: 381 atccaggactaccagaactgcatgaagcacggcaggcccagcctcgatttcctgcagtgg 440 |||||||| ||||||||||||||||| |||| |||||| ||||| ||||| | |||| Sbjct: 114031 atccaggagcaccagaactgcatgaagtacgggaggcccgacctcgggttcctccggtgg 113972 Query: 441 aggtggcg 448 ||||||| Sbjct: 113971 cggtggcg 113964 Score = 46.1 bits (23), Expect = 0.12 Identities = 59/71 (83%) Strand = Plus / Plus Query: 381 atccaggactaccagaactgcatgaagcacggcaggcccagcctcgatttcctgcagtgg 440 |||||||| ||||||||||||||||| ||||| | ||| ||||| ||||| | |||| Sbjct: 151948 atccaggagcaccagaactgcatgaagtacggccgccccgacctcggcttcctccggtgg 152007 Query: 441 aggtggcgccc 451 |||||||||| Sbjct: 152008 cggtggcgccc 152018 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 466 gctgcgagctcgcgcgcttcgacgcggcg 494 ||||||||||| |||| |||||||||||| Sbjct: 152024 gctgcgagctcccgcggttcgacgcggcg 152052 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 466 gctgcgagctcgcgcgcttcgacgcggcg 494 ||||||||||| |||| |||||||||||| Sbjct: 113955 gctgcgagctcccgcggttcgacgcggcg 113927
>dbj|AP003709.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0006H05 Length = 154821 Score = 48.1 bits (24), Expect = 0.030 Identities = 48/56 (85%) Strand = Plus / Minus Query: 350 gccgcattacaccaacgcgacgtgcgccttcatccaggactaccagaactgcatga 405 |||||| ||||||||| ||| ||| ||| ||||||||| ||||||||||||||| Sbjct: 17862 gccgcagtacaccaacctgacctgctcctacatccaggagcaccagaactgcatga 17807 Score = 40.1 bits (20), Expect = 7.4 Identities = 59/72 (81%) Strand = Plus / Minus Query: 381 atccaggactaccagaactgcatgaagcacggcaggcccagcctcgatttcctgcagtgg 440 |||||||| ||||||||||| | ||| ||||| | ||| |||||| ||||| ||||| Sbjct: 4859 atccaggagcaccagaactgcctcaagtacggccgccccgacctcgaattcctcaagtgg 4800 Query: 441 aggtggcgcccc 452 ||||||||||| Sbjct: 4799 cggtggcgcccc 4788
>dbj|AP005751.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0072H09 Length = 160541 Score = 48.1 bits (24), Expect = 0.030 Identities = 51/60 (85%) Strand = Plus / Plus Query: 368 gacgtgcgccttcatccaggactaccagaactgcatgaagcacggcaggcccagcctcga 427 ||||||| | |||||| | ||| ||||||||||||||||| ||||| ||| |||||||| Sbjct: 42616 gacgtgcccgttcatcgacgaccaccagaactgcatgaagttcggcaagccgagcctcga 42675
>ref|NM_185776.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1221 Score = 46.1 bits (23), Expect = 0.12 Identities = 59/71 (83%) Strand = Plus / Plus Query: 381 atccaggactaccagaactgcatgaagcacggcaggcccagcctcgatttcctgcagtgg 440 |||||||| ||||||||||||||||| ||||| | ||| ||||| ||||| | |||| Sbjct: 253 atccaggagcaccagaactgcatgaagtacggccgccccgacctcggcttcctccggtgg 312 Query: 441 aggtggcgccc 451 |||||||||| Sbjct: 313 cggtggcgccc 323 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 466 gctgcgagctcgcgcgcttcgacgcggcg 494 ||||||||||| |||| |||||||||||| Sbjct: 329 gctgcgagctcccgcggttcgacgcggcg 357
>dbj|AK108774.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-H10, full insert sequence Length = 1510 Score = 46.1 bits (23), Expect = 0.12 Identities = 59/71 (83%) Strand = Plus / Minus Query: 381 atccaggactaccagaactgcatgaagcacggcaggcccagcctcgatttcctgcagtgg 440 |||||||| ||||||||||||||||| ||||| | ||| ||||| ||||| | |||| Sbjct: 979 atccaggagcaccagaactgcatgaagtacggccgccccgacctcggcttcctccggtgg 920 Query: 441 aggtggcgccc 451 |||||||||| Sbjct: 919 cggtggcgccc 909 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 466 gctgcgagctcgcgcgcttcgacgcggcg 494 ||||||||||| |||| |||||||||||| Sbjct: 903 gctgcgagctcccgcggttcgacgcggcg 875
>dbj|AK106309.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-D01, full insert sequence Length = 1584 Score = 46.1 bits (23), Expect = 0.12 Identities = 59/71 (83%) Strand = Plus / Plus Query: 381 atccaggactaccagaactgcatgaagcacggcaggcccagcctcgatttcctgcagtgg 440 |||||||| ||||||||||||||||| ||||| | ||| ||||| ||||| | |||| Sbjct: 399 atccaggagcaccagaactgcatgaagtacggccgccccgacctcggcttcctccggtgg 458 Query: 441 aggtggcgccc 451 |||||||||| Sbjct: 459 cggtggcgccc 469 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 466 gctgcgagctcgcgcgcttcgacgcggcg 494 ||||||||||| |||| |||||||||||| Sbjct: 475 gctgcgagctcccgcggttcgacgcggcg 503
>gb|AC123923.2| Mus musculus BAC clone RP24-228I17 from chromosome 1, complete sequence Length = 163182 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Minus Query: 382 tccaggactaccagaactgcatgaag 407 |||||||| ||||||||||||||||| Sbjct: 76831 tccaggacaaccagaactgcatgaag 76806
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 326 ggtccgcgaccccgccggcgcg 347 |||||||||||||||||||||| Sbjct: 3983924 ggtccgcgaccccgccggcgcg 3983903
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 479 gcgcttcgacgcggcgcacttc 500 |||||||||||||||||||||| Sbjct: 3919064 gcgcttcgacgcggcgcacttc 3919043
>emb|AL672221.14| Mouse DNA sequence from clone RP23-57B14 on chromosome X, complete sequence Length = 189048 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 28 tttagcattctgattggattgc 49 |||||||||||||||||||||| Sbjct: 81116 tttagcattctgattggattgc 81095
>gb|AY714813.1| Cercopithecine herpesvirus 2, complete genome Length = 150715 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 325 gggtccgcgaccccgccggcg 345 ||||||||||||||||||||| Sbjct: 15886 gggtccgcgaccccgccggcg 15906
>ref|XM_480099.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2274 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 331 gcgaccccgccggcgcgctgc 351 ||||||||||||||||||||| Sbjct: 116 gcgaccccgccggcgcgctgc 136
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 469 gcgagctcgcgcgcttcgacgcggcgcac 497 |||||| ||||||||||| |||||||||| Sbjct: 76029 gcgagcgcgcgcgcttcgtcgcggcgcac 76001 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 cgcgcgcttcgacgcggcgc 495 |||||||||||||||||||| Sbjct: 1727736 cgcgcgcttcgacgcggcgc 1727717 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 cgcgcgcttcgacgcggcgc 495 |||||||||||||||||||| Sbjct: 983940 cgcgcgcttcgacgcggcgc 983921
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 469 gcgagctcgcgcgcttcgacgcggcgcac 497 |||||| ||||||||||| |||||||||| Sbjct: 624160 gcgagcgcgcgcgcttcgtcgcggcgcac 624188 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 cgcgcgcttcgacgcggcgc 495 |||||||||||||||||||| Sbjct: 2973230 cgcgcgcttcgacgcggcgc 2973211 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 cgcgcgcttcgacgcggcgc 495 |||||||||||||||||||| Sbjct: 2025695 cgcgcgcttcgacgcggcgc 2025676
>gb|AC119806.6| Mus musculus chromosome 7, clone RP23-211A9, complete sequence Length = 215147 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 375 gccttcatccaggactaccag 395 ||||||||||||||||||||| Sbjct: 97663 gccttcatccaggactaccag 97683
>gb|AC164702.2| Mus musculus BAC clone RP23-402H19 from chromosome 10, complete sequence Length = 208221 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 224 cctcttcctcgggcctctccg 244 ||||||||||||||||||||| Sbjct: 32447 cctcttcctcgggcctctccg 32427
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 469 gcgagctcgcgcgcttcgacgcggcgcac 497 |||||| ||||||||||| |||||||||| Sbjct: 432754 gcgagcgcgcgcgcttcgtcgcggcgcac 432782 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 cgcgcgcttcgacgcggcgc 495 |||||||||||||||||||| Sbjct: 2703202 cgcgcgcttcgacgcggcgc 2703183 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 cgcgcgcttcgacgcggcgc 495 |||||||||||||||||||| Sbjct: 2350972 cgcgcgcttcgacgcggcgc 2350991
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 222 ctcctcttcctcgggcctctccgatcgcc 250 |||||| ||||||||||||||||| |||| Sbjct: 3154635 ctcctcatcctcgggcctctccgaccgcc 3154663
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 331 gcgaccccgccggcgcgctgc 351 ||||||||||||||||||||| Sbjct: 2764859 gcgaccccgccggcgcgctgc 2764879 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 gccgccatgccattgccaag 164 |||||||||||||||||||| Sbjct: 24114748 gccgccatgccattgccaag 24114729 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 tcctcttcctcgcagcggcc 212 |||||||||||||||||||| Sbjct: 8431055 tcctcttcctcgcagcggcc 8431074
>dbj|AP005740.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0015A04 Length = 152058 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 331 gcgaccccgccggcgcgctgc 351 ||||||||||||||||||||| Sbjct: 28008 gcgaccccgccggcgcgctgc 28028
>dbj|AP005892.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0011D16 Length = 177329 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 222 ctcctcttcctcgggcctctccgatcgcc 250 |||||| ||||||||||||||||| |||| Sbjct: 30948 ctcctcatcctcgggcctctccgaccgcc 30976
>dbj|AP005727.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0038I09 Length = 153520 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 222 ctcctcttcctcgggcctctccgatcgcc 250 |||||| ||||||||||||||||| |||| Sbjct: 64298 ctcctcatcctcgggcctctccgaccgcc 64326
>ref|XM_483064.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1098 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 gccgccatgccattgccaag 164 |||||||||||||||||||| Sbjct: 93 gccgccatgccattgccaag 74
>ref|NM_197612.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0001O14.12), mRNA Length = 1242 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 470 cgagctcgcgcgcttcgacgcggcgcac 497 |||||||||||||||| |||||||||| Sbjct: 303 cgagctcgcgcgcttcttcgcggcgcac 330
>ref|NM_192398.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1215 Score = 40.1 bits (20), Expect = 7.4 Identities = 59/72 (81%) Strand = Plus / Plus Query: 381 atccaggactaccagaactgcatgaagcacggcaggcccagcctcgatttcctgcagtgg 440 |||||||| ||||||||||| | ||| ||||| | ||| |||||| ||||| ||||| Sbjct: 247 atccaggagcaccagaactgcctcaagtacggccgccccgacctcgaattcctcaagtgg 306 Query: 441 aggtggcgcccc 452 ||||||||||| Sbjct: 307 cggtggcgcccc 318
>gb|BT017098.1| Zea mays clone EL01N0361G07.c mRNA sequence Length = 966 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 ccgctctcgctgccctcctc 197 |||||||||||||||||||| Sbjct: 48 ccgctctcgctgccctcctc 67
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 cggcgcgctgccgcattaca 360 |||||||||||||||||||| Sbjct: 3135299 cggcgcgctgccgcattaca 3135280
>gb|AC135228.5| Oryza sativa chromosome 3 BAC OSJNBb0122C16 genomic sequence, complete sequence Length = 129440 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 cgctctggctcctcttcctc 233 |||||||||||||||||||| Sbjct: 80834 cgctctggctcctcttcctc 80853
>ref|XM_959572.1| Neurospora crassa OR74A hypothetical protein (NCU02043.1) partial mRNA Length = 939 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 175 tttccgctctcgctgccctcctct 198 ||||| |||||||||||||||||| Sbjct: 637 tttcctctctcgctgccctcctct 614
>ref|XM_329232.1| Neurospora crassa OR74A hypothetical protein (NCU02043.1) partial mRNA Length = 939 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 175 tttccgctctcgctgccctcctct 198 ||||| |||||||||||||||||| Sbjct: 637 tttcctctctcgctgccctcctct 614
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 cgctctggctcctcttcctc 233 |||||||||||||||||||| Sbjct: 29248967 cgctctggctcctcttcctc 29248986
>gb|AC145380.3| Oryza sativa chromosome 3 BAC OSJNBa0013A09 genomic sequence, complete sequence Length = 139788 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 cgctctggctcctcttcctc 233 |||||||||||||||||||| Sbjct: 107033 cgctctggctcctcttcctc 107014
>emb|AL596247.22| Human DNA sequence from clone RP11-417O11 on chromosome 10 Contains the 5' end of the CAMK2G gene for calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma, the PLAU gene for plasminogen activator urokinase, three novel genes (FLJ35198), the 5' end of the VCL gene for vinculin and three CpG islands, complete sequence Length = 228098 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 185 cgctgccctcctcttcctcgcagc 208 |||| ||||||||||||||||||| Sbjct: 14249 cgcttccctcctcttcctcgcagc 14272
>emb|BX842623.1| Neurospora crassa DNA linkage group I BAC clone B2I10 Length = 83703 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 175 tttccgctctcgctgccctcctct 198 ||||| |||||||||||||||||| Sbjct: 52188 tttcctctctcgctgccctcctct 52165
>gb|AF448416.1| Zea mays B73 chromosome 9S bz genomic region Length = 106186 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 tcgccggagttcgccggagc 146 |||||||||||||||||||| Sbjct: 60056 tcgccggagttcgccggagc 60037 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 tcgccggagttcgccggagc 146 |||||||||||||||||||| Sbjct: 50677 tcgccggagttcgccggagc 50658
>gb|AC025783.10| Oryza sativa chromosome 10 BAC OSJNBa0001O14 genomic sequence, complete sequence Length = 178022 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 470 cgagctcgcgcgcttcgacgcggcgcac 497 |||||||||||||||| |||||||||| Sbjct: 59877 cgagctcgcgcgcttcttcgcggcgcac 59904
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 470 cgagctcgcgcgcttcgacgcggcgcac 497 |||||||||||||||| |||||||||| Sbjct: 20797478 cgagctcgcgcgcttcttcgcggcgcac 20797505
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 cgctctggctcctcttcctc 233 |||||||||||||||||||| Sbjct: 29340395 cgctctggctcctcttcctc 29340414
>gb|AC079818.56| Mus musculus strain C57BL/6J chromosome 10 clone rp23-362c8, complete sequence Length = 238658 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 tgaagcacggcaggcccagc 422 |||||||||||||||||||| Sbjct: 130442 tgaagcacggcaggcccagc 130461
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 ccggagttcgccggagccgccatg 153 ||||||||||||| |||||||||| Sbjct: 2769234 ccggagttcgccgcagccgccatg 2769257
>dbj|AP006161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1267B06 Length = 156989 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 191 cctcctcttcctcgcagcggccac 214 |||||||||||||||||| ||||| Sbjct: 111834 cctcctcttcctcgcagccgccac 111857
>dbj|AP003999.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1115_A05 Length = 113326 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 191 cctcctcttcctcgcagcggccac 214 |||||||||||||||||| ||||| Sbjct: 9409 cctcctcttcctcgcagccgccac 9432
>dbj|AP003907.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1217_D10 Length = 103188 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 tcctcttcctcgcagcggcc 212 |||||||||||||||||||| Sbjct: 46772 tcctcttcctcgcagcggcc 46791
>dbj|AP003618.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0561B08 Length = 161083 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 tttccgctctcgctgccctc 194 |||||||||||||||||||| Sbjct: 97892 tttccgctctcgctgccctc 97911
>dbj|AP005170.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0080E19 Length = 152755 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ggtggcgccccgacggcggc 461 |||||||||||||||||||| Sbjct: 33004 ggtggcgccccgacggcggc 32985
>dbj|AP004785.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0061B07 Length = 124766 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ggtggcgccccgacggcggc 461 |||||||||||||||||||| Sbjct: 71644 ggtggcgccccgacggcggc 71625
>dbj|AP004557.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0028A08 Length = 150818 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 gccgccatgccattgccaag 164 |||||||||||||||||||| Sbjct: 68234 gccgccatgccattgccaag 68215
>dbj|AB100246.1| Oryza sativa (japonica cultivar-group) GID2 mRNA, complete cds Length = 639 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 191 cctcctcttcctcgcagcggccac 214 |||||||||||||||||| ||||| Sbjct: 134 cctcctcttcctcgcagccgccac 157
>dbj|AK110903.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-B04, full insert sequence Length = 1472 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 cgctctggctcctcttcctc 233 |||||||||||||||||||| Sbjct: 811 cgctctggctcctcttcctc 830
>dbj|AK104312.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-G10, full insert sequence Length = 1686 Score = 40.1 bits (20), Expect = 7.4 Identities = 59/72 (81%) Strand = Plus / Plus Query: 381 atccaggactaccagaactgcatgaagcacggcaggcccagcctcgatttcctgcagtgg 440 |||||||| ||||||||||| | ||| ||||| | ||| |||||| ||||| ||||| Sbjct: 494 atccaggagcaccagaactgcctcaagtacggccgccccgacctcgaattcctcaagtgg 553 Query: 441 aggtggcgcccc 452 ||||||||||| Sbjct: 554 cggtggcgcccc 565
>dbj|AK103547.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132E17, full insert sequence Length = 1574 Score = 40.1 bits (20), Expect = 7.4 Identities = 59/72 (81%) Strand = Plus / Plus Query: 381 atccaggactaccagaactgcatgaagcacggcaggcccagcctcgatttcctgcagtgg 440 |||||||| ||||||||||| | ||| ||||| | ||| |||||| ||||| ||||| Sbjct: 495 atccaggagcaccagaactgcctcaagtacggccgccccgacctcgaattcctcaagtgg 554 Query: 441 aggtggcgcccc 452 ||||||||||| Sbjct: 555 cggtggcgcccc 566
>dbj|AK068248.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146A14, full insert sequence Length = 2361 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 191 cctcctcttcctcgcagcggccac 214 |||||||||||||||||| ||||| Sbjct: 230 cctcctcttcctcgcagccgccac 253
>dbj|AK061145.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-D04, full insert sequence Length = 1741 Score = 40.1 bits (20), Expect = 7.4 Identities = 59/72 (81%) Strand = Plus / Plus Query: 381 atccaggactaccagaactgcatgaagcacggcaggcccagcctcgatttcctgcagtgg 440 |||||||| ||||||||||| | ||| ||||| | ||| |||||| ||||| ||||| Sbjct: 496 atccaggagcaccagaactgcctcaagtacggccgccccgacctcgaattcctcaagtgg 555 Query: 441 aggtggcgcccc 452 ||||||||||| Sbjct: 556 cggtggcgcccc 567
>dbj|AK059753.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-B07, full insert sequence Length = 1135 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 tcctcttcctcgcagcggcc 212 |||||||||||||||||||| Sbjct: 76 tcctcttcctcgcagcggcc 95
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 tcgcgcgcttcgacgcggcg 494 |||||||||||||||||||| Sbjct: 1976295 tcgcgcgcttcgacgcggcg 1976276
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 accccgccggcgcgctgccg 353 |||||||||||||||||||| Sbjct: 732624 accccgccggcgcgctgccg 732643
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 470 cgagctcgcgcgcttcgacgcggcgcac 497 |||||||||||||||| |||||||||| Sbjct: 20808742 cgagctcgcgcgcttcttcgcggcgcac 20808769 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,579,067 Number of Sequences: 3902068 Number of extensions: 3579067 Number of successful extensions: 79718 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77886 Number of HSP's gapped (non-prelim): 1832 length of query: 543 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 520 effective length of database: 17,143,297,704 effective search space: 8914514806080 effective search space used: 8914514806080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
