ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart26g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LAS17_YEAST (Q12446) Proline-rich protein LAS17 33 0.61
2MYO1_CAEEL (P02567) Myosin-1 (Myosin heavy chain D) (MHC D) 31 1.8
3VGLZ_EHV1K (P32515) Glycoprotein precursor 30 5.2
4K1043_MOUSE (Q80XJ3) TPR repeat-containing protein KIAA1043 30 5.2
5GFC1_HUMAN (P63117) HERV-F(c)1_Xq21.33 provirus ancestral Gag po... 29 6.8
6LBD13_ARATH (Q9AT61) LOB domain protein 13 29 6.8
7MYO2_CAEEL (P12845) Myosin-2 (Myosin heavy chain C) (MHC C) 29 8.9

>LAS17_YEAST (Q12446) Proline-rich protein LAS17|
          Length = 633

 Score = 32.7 bits (73), Expect = 0.61
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = +1

Query: 403 PLCPTSSAPHPTRNQPTTPPDPPLSLENSSISTLRPS 513
           PL   + AP    N P  PP PP SL  S I    PS
Sbjct: 452 PLPQNTQAPSQATNVPVAPPPPPASLGQSQIPQSAPS 488



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>MYO1_CAEEL (P02567) Myosin-1 (Myosin heavy chain D) (MHC D)|
          Length = 1938

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 118 GQKVDQLRWILGGMGRGLY 174
           GQ VDQ+ W +G M +GLY
Sbjct: 412 GQNVDQVHWAIGAMAKGLY 430



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>VGLZ_EHV1K (P32515) Glycoprotein precursor|
          Length = 383

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 415 TSSAPHPTRNQPTTPPDPPLSLENSSIST 501
           T+S+  PT + PTT   PP S   SS ST
Sbjct: 47  TNSSSSPTTSPPTTSSSPPTSTHTSSPST 75



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>K1043_MOUSE (Q80XJ3) TPR repeat-containing protein KIAA1043|
          Length = 1691

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 412  PTSSAPHPTRNQPTTPPDPPL 474
            P SS P P R+ P +P DPPL
Sbjct: 1495 PGSSHPSPGRDTPVSPADPPL 1515



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>GFC1_HUMAN (P63117) HERV-F(c)1_Xq21.33 provirus ancestral Gag polyprotein (Gag|
           polyprotein) [Contains: Matrix protein; Capsid protein]
          Length = 469

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 17/36 (47%), Positives = 17/36 (47%)
 Frame = +1

Query: 403 PLCPTSSAPHPTRNQPTTPPDPPLSLENSSISTLRP 510
           P  P SS P PT   P  PP PP S  N   S L P
Sbjct: 139 PPYPGSSGPTPTA--PPLPPTPPSSPANPPASALPP 172



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>LBD13_ARATH (Q9AT61) LOB domain protein 13|
          Length = 268

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 403 PLCPTSSAPHPTRNQPTTPPDPPLSLENSSI 495
           P  PT   P    +QP  PP PP+SL + S+
Sbjct: 197 PPPPTPRPPRLLSSQPAPPPTPPVSLPSPSM 227



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>MYO2_CAEEL (P12845) Myosin-2 (Myosin heavy chain C) (MHC C)|
          Length = 1947

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 118 GQKVDQLRWILGGMGRGLY 174
           GQ ++Q+ W +G M +GLY
Sbjct: 418 GQNIEQVNWAVGAMAKGLY 436


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.130    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,127,641
Number of Sequences: 219361
Number of extensions: 809642
Number of successful extensions: 3653
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3607
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
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