Clone Name | bart26g11 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | LAS17_YEAST (Q12446) Proline-rich protein LAS17 | 33 | 0.61 | 2 | MYO1_CAEEL (P02567) Myosin-1 (Myosin heavy chain D) (MHC D) | 31 | 1.8 | 3 | VGLZ_EHV1K (P32515) Glycoprotein precursor | 30 | 5.2 | 4 | K1043_MOUSE (Q80XJ3) TPR repeat-containing protein KIAA1043 | 30 | 5.2 | 5 | GFC1_HUMAN (P63117) HERV-F(c)1_Xq21.33 provirus ancestral Gag po... | 29 | 6.8 | 6 | LBD13_ARATH (Q9AT61) LOB domain protein 13 | 29 | 6.8 | 7 | MYO2_CAEEL (P12845) Myosin-2 (Myosin heavy chain C) (MHC C) | 29 | 8.9 |
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>LAS17_YEAST (Q12446) Proline-rich protein LAS17| Length = 633 Score = 32.7 bits (73), Expect = 0.61 Identities = 16/37 (43%), Positives = 17/37 (45%) Frame = +1 Query: 403 PLCPTSSAPHPTRNQPTTPPDPPLSLENSSISTLRPS 513 PL + AP N P PP PP SL S I PS Sbjct: 452 PLPQNTQAPSQATNVPVAPPPPPASLGQSQIPQSAPS 488
>MYO1_CAEEL (P02567) Myosin-1 (Myosin heavy chain D) (MHC D)| Length = 1938 Score = 31.2 bits (69), Expect = 1.8 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = +1 Query: 118 GQKVDQLRWILGGMGRGLY 174 GQ VDQ+ W +G M +GLY Sbjct: 412 GQNVDQVHWAIGAMAKGLY 430
>VGLZ_EHV1K (P32515) Glycoprotein precursor| Length = 383 Score = 29.6 bits (65), Expect = 5.2 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = +1 Query: 415 TSSAPHPTRNQPTTPPDPPLSLENSSIST 501 T+S+ PT + PTT PP S SS ST Sbjct: 47 TNSSSSPTTSPPTTSSSPPTSTHTSSPST 75
>K1043_MOUSE (Q80XJ3) TPR repeat-containing protein KIAA1043| Length = 1691 Score = 29.6 bits (65), Expect = 5.2 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +1 Query: 412 PTSSAPHPTRNQPTTPPDPPL 474 P SS P P R+ P +P DPPL Sbjct: 1495 PGSSHPSPGRDTPVSPADPPL 1515
>GFC1_HUMAN (P63117) HERV-F(c)1_Xq21.33 provirus ancestral Gag polyprotein (Gag| polyprotein) [Contains: Matrix protein; Capsid protein] Length = 469 Score = 29.3 bits (64), Expect = 6.8 Identities = 17/36 (47%), Positives = 17/36 (47%) Frame = +1 Query: 403 PLCPTSSAPHPTRNQPTTPPDPPLSLENSSISTLRP 510 P P SS P PT P PP PP S N S L P Sbjct: 139 PPYPGSSGPTPTA--PPLPPTPPSSPANPPASALPP 172
>LBD13_ARATH (Q9AT61) LOB domain protein 13| Length = 268 Score = 29.3 bits (64), Expect = 6.8 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +1 Query: 403 PLCPTSSAPHPTRNQPTTPPDPPLSLENSSI 495 P PT P +QP PP PP+SL + S+ Sbjct: 197 PPPPTPRPPRLLSSQPAPPPTPPVSLPSPSM 227
>MYO2_CAEEL (P12845) Myosin-2 (Myosin heavy chain C) (MHC C)| Length = 1947 Score = 28.9 bits (63), Expect = 8.9 Identities = 9/19 (47%), Positives = 14/19 (73%) Frame = +1 Query: 118 GQKVDQLRWILGGMGRGLY 174 GQ ++Q+ W +G M +GLY Sbjct: 418 GQNIEQVNWAVGAMAKGLY 436 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.312 0.130 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,127,641 Number of Sequences: 219361 Number of extensions: 809642 Number of successful extensions: 3653 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 3065 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3607 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3927707336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)