ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart26g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_480132.1| Oryza sativa (japonica cultivar-group), mRNA 70 9e-09
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 70 9e-09
3dbj|AP005467.3| Oryza sativa (japonica cultivar-group) genomic D... 70 9e-09
4ref|XM_480133.1| Oryza sativa (japonica cultivar-group), mRNA 62 2e-06
5ref|XM_545477.2| PREDICTED: Canis familiaris similar to G protei... 48 0.031
6dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
7dbj|AP006620.1| Nocardia farcinica IFM 10152 plasmid pNF2 DNA, c... 46 0.12
8dbj|AP004811.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
9ref|XM_589169.2| PREDICTED: Bos taurus similar to zinc finger pr... 44 0.49
10gb|AC102430.9| Mus musculus chromosome 14, clone RP24-103F5, com... 42 1.9
11gb|AY661659.1| Sorghum bicolor clone BAC 75D9, complete sequence 42 1.9
12gb|DQ440402.1| Aedes aegypti clone AET-5374 ADP-ribosylation fac... 42 1.9
13gb|AC116326.5| Mus musculus BAC clone RP24-64C6 from chromosome ... 42 1.9
14gb|AC151837.4| Mus musculus BAC clone RP23-330A14 from chromosom... 42 1.9
15dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
16dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 1.9
17dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
18dbj|AK099951.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
19emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 42 1.9
20gb|U96736.1|SLU96736 Selaginella lepidophylla trehalose-6-phosph... 42 1.9
21gb|M33764.1|HUMSODB Human ornithine decarboxylase gene, complete... 42 1.9
22gb|CP000110.1| Synechococcus sp. CC9605, complete genome 40 7.6
23ref|NM_186091.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.6
24ref|XM_604447.2| PREDICTED: Bos taurus similar to potassium inwa... 40 7.6
25gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 7.6
26gb|AF517833.1| Morone saxatilis Hoxb3a protein (Hoxb3a) and Hoxb... 40 7.6
27gb|BC024304.1| Homo sapiens cDNA clone IMAGE:4900520, **** WARNI... 40 7.6
28gb|AF540391.1| Sus scrofa potassium inwardly-rectifying channel ... 40 7.6
29emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 7.6
30emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete ... 40 7.6
31ref|NM_002688.4| Homo sapiens septin 5 (SEPT5), mRNA 40 7.6
32ref|NM_000407.4| Homo sapiens glycoprotein Ib (platelet), beta p... 40 7.6
33gb|AC000093.5| Homo sapiens Chromosome 22q11 Cosmid Clone carlaa... 40 7.6
34gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 7.6
35dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
36gb|AC008744.6|AC008744 Homo sapiens chromosome 19 clone CTD-2561... 40 7.6
37dbj|AP003571.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
38dbj|AP004274.5| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
39emb|BX005473.5| Zebrafish DNA sequence from clone DKEY-148P7 in ... 40 7.6
40gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 7.6
41gb|AC005823.1|AC005823 Homo sapiens chromosome 17, clone hRPK.10... 40 7.6
42gb|AF006988.1|HSCDCREL1 Homo sapiens septin (CDCrel-1) gene, alt... 40 7.6
43gb|U59632.1|HSU59632 Homo sapiens H5 mRNA, partial cds; and plat... 40 7.6
44gb|J03259.1|HUMGPIB Human platelet glycoprotein Ib beta chain mR... 40 7.6
45gb|AC099795.2| Homo sapiens chromosome 1 clone RP5-848E13, compl... 40 7.6
46gb|L20860.1|HUMGLYIBBE Human glycoprotein Ib beta mRNA, complete... 40 7.6
47dbj|AB086231.1| Homo sapiens GP1BB gene for platelet glycoprotei... 40 7.6

>ref|XM_480132.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1404

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                       
Query: 167 atggaggactggctcttctactcgctcaccaccatgctctgcctcctcagctcgctgctg 226
           ||||||||||||||||||||||| |||||| |  |||||||||||    |||||||||||
Sbjct: 1   atggaggactggctcttctactccctcacctcgctgctctgcctcgcgtgctcgctgctg 60

                      
Query: 227 ctgcgggcccg 237
           ||||| |||||
Sbjct: 61  ctgcgcgcccg 71



to top

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                           
Query: 167     atggaggactggctcttctactcgctcaccaccatgctctgcctcctcagctcgctgctg 226
               ||||||||||||||||||||||| |||||| |  |||||||||||    |||||||||||
Sbjct: 2995489 atggaggactggctcttctactccctcacctcgctgctctgcctcgcgtgctcgctgctg 2995430

                          
Query: 227     ctgcgggcccg 237
               ||||| |||||
Sbjct: 2995429 ctgcgcgcccg 2995419



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                           
Query: 167     atggaggactggctcttctactcgctcaccaccatgctctgcctcctcagctcgctgctg 226
               |||||||| |||||||||||||| |||||| |  |||||||||||    |||||||||||
Sbjct: 3000897 atggaggattggctcttctactccctcacctcgctgctctgcctcgcgtgctcgctgctg 3000956

                          
Query: 227     ctgcgggcccg 237
               ||||| |||||
Sbjct: 3000957 ctgcgcgcccg 3000967



to top

>dbj|AP005467.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1349_D05
          Length = 174478

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                         
Query: 167   atggaggactggctcttctactcgctcaccaccatgctctgcctcctcagctcgctgctg 226
             ||||||||||||||||||||||| |||||| |  |||||||||||    |||||||||||
Sbjct: 46212 atggaggactggctcttctactccctcacctcgctgctctgcctcgcgtgctcgctgctg 46153

                        
Query: 227   ctgcgggcccg 237
             ||||| |||||
Sbjct: 46152 ctgcgcgcccg 46142



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                         
Query: 167   atggaggactggctcttctactcgctcaccaccatgctctgcctcctcagctcgctgctg 226
             |||||||| |||||||||||||| |||||| |  |||||||||||    |||||||||||
Sbjct: 51620 atggaggattggctcttctactccctcacctcgctgctctgcctcgcgtgctcgctgctg 51679

                        
Query: 227   ctgcgggcccg 237
             ||||| |||||
Sbjct: 51680 ctgcgcgcccg 51690



to top

>ref|XM_480133.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1551

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                       
Query: 167 atggaggactggctcttctactcgctcaccaccatgctctgcctcctcagctcgctgctg 226
           |||||||| |||||||||||||| |||||| |  |||||||||||    |||||||||||
Sbjct: 1   atggaggattggctcttctactccctcacctcgctgctctgcctcgcgtgctcgctgctg 60

                      
Query: 227 ctgcgggcccg 237
           ||||| |||||
Sbjct: 61  ctgcgcgcccg 71



to top

>ref|XM_545477.2| PREDICTED: Canis familiaris similar to G protein-activated inward
           rectifier potassium channel 1 (GIRK1) (Potassium
           channel, inwardly rectifying, subfamily J, member 3)
           (Inward rectifier K(+) channel Kir3.1) (LOC488355), mRNA
          Length = 2638

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 220 gctgctgctgcgggcccgggcccg 243
           ||||||||||||||||||||||||
Sbjct: 135 gctgctgctgcgggcccgggcccg 112



to top

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                            
Query: 167      atggaggactggctcttctactcgctcaccaccatgctctgcctcctcagctcgctgctg 226
                |||||||||||| ||||||||||||| |||    |||| ||||||    |||||||||||
Sbjct: 12811874 atggaggactggatcttctactcgctgaccttgctgctatgcctcgcgtgctcgctgctg 12811815

                           
Query: 227      ctgcgggcccg 237
                ||||| |||||
Sbjct: 12811814 ctgcgcgcccg 12811804



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 534      tgctcaccagcggcggccgcaacgt 558
                ||||||||||||||||||| |||||
Sbjct: 12811525 tgctcaccagcggcggccggaacgt 12811501



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 534      tgctcaccagcggcggccgc 553
                ||||||||||||||||||||
Sbjct: 25699088 tgctcaccagcggcggccgc 25699107



to top

>dbj|AP006620.1| Nocardia farcinica IFM 10152 plasmid pNF2 DNA, complete sequence
          Length = 87093

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 352  cgacctcgagcccgtgctgcggcgcct 378
            |||| ||||||||||||||||||||||
Sbjct: 3165 cgacgtcgagcccgtgctgcggcgcct 3139



to top

>dbj|AP004811.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0019A05
          Length = 144255

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                          
Query: 167    atggaggactggctcttctactcgctcaccaccatgctctgcctcctcagctcgctgctg 226
              |||||||||||| ||||||||||||| |||    |||| ||||||    |||||||||||
Sbjct: 112651 atggaggactggatcttctactcgctgaccttgctgctatgcctcgcgtgctcgctgctg 112592

                         
Query: 227    ctgcgggcccg 237
              ||||| |||||
Sbjct: 112591 ctgcgcgcccg 112581



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 534    tgctcaccagcggcggccgcaacgt 558
              ||||||||||||||||||| |||||
Sbjct: 112302 tgctcaccagcggcggccggaacgt 112278



to top

>ref|XM_589169.2| PREDICTED: Bos taurus similar to zinc finger protein 312-like
            (LOC511770), mRNA
          Length = 2540

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 258  ccgcgacgctgacgcctcagacgccgccgctgcc 291
            ||||||||||| |||||| | |||||||||||||
Sbjct: 1760 ccgcgacgctgccgcctctgccgccgccgctgcc 1793



to top

>gb|AC102430.9| Mus musculus chromosome 14, clone RP24-103F5, complete sequence
          Length = 153864

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 85     atctttttcttgcagtacaaa 105
              |||||||||||||||||||||
Sbjct: 108475 atctttttcttgcagtacaaa 108455



to top

>gb|AY661659.1| Sorghum bicolor clone BAC 75D9, complete sequence
          Length = 204120

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 208   cctcctcagctcgctgctgct 228
             |||||||||||||||||||||
Sbjct: 65670 cctcctcagctcgctgctgct 65650



to top

>gb|DQ440402.1| Aedes aegypti clone AET-5374 ADP-ribosylation factor 6-like
           interacting protein mRNA, complete cds
          Length = 603

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 296 ggtccggtgccgctgccggttctcg 320
           |||| ||||||||||||||||||||
Sbjct: 548 ggtcaggtgccgctgccggttctcg 572



to top

>gb|AC116326.5| Mus musculus BAC clone RP24-64C6 from chromosome 7, complete sequence
          Length = 181548

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 183  tctactcgctcaccaccatgc 203
            |||||||||||||||||||||
Sbjct: 8641 tctactcgctcaccaccatgc 8661



to top

>gb|AC151837.4| Mus musculus BAC clone RP23-330A14 from chromosome 7, complete sequence
          Length = 209661

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 183   tctactcgctcaccaccatgc 203
             |||||||||||||||||||||
Sbjct: 58215 tctactcgctcaccaccatgc 58235



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 461    gcccaccgcgcactcgtccag 481
              |||||||||||||||||||||
Sbjct: 489210 gcccaccgcgcactcgtccag 489230



to top

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 229     gcgggcccgggcccgcagcccgtcc 253
               ||||||| |||||||||||||||||
Sbjct: 4577201 gcgggccggggcccgcagcccgtcc 4577225



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 352     cgacctcgagcccgtgctgcggcgc 376
               |||| ||||||||||||||||||||
Sbjct: 1479894 cgacttcgagcccgtgctgcggcgc 1479918



to top

>dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0017C12
          Length = 135356

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 461   gcccaccgcgcactcgtccag 481
             |||||||||||||||||||||
Sbjct: 85451 gcccaccgcgcactcgtccag 85471



to top

>dbj|AK099951.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123G02, full
           insert sequence
          Length = 1700

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 461 gcccaccgcgcactcgtccag 481
           |||||||||||||||||||||
Sbjct: 299 gcccaccgcgcactcgtccag 319



to top

>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 232     ggcccgggcccgcagcccgtc 252
               |||||||||||||||||||||
Sbjct: 1640855 ggcccgggcccgcagcccgtc 1640835



to top

>gb|U96736.1|SLU96736 Selaginella lepidophylla trehalose-6-phosphate synthase mRNA,
            complete cds
          Length = 3223

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 206  tgcctcctcagctcgctgctgctgc 230
            ||||||||||||| |||||||||||
Sbjct: 2753 tgcctcctcagcttgctgctgctgc 2729



to top

>gb|M33764.1|HUMSODB Human ornithine decarboxylase gene, complete cds
          Length = 8841

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 230 cgggcccgggcccgcagcccg 250
           |||||||||||||||||||||
Sbjct: 675 cgggcccgggcccgcagcccg 655



to top

>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 189     cgctcaccaccatgctctgc 208
               ||||||||||||||||||||
Sbjct: 1143140 cgctcaccaccatgctctgc 1143159



to top

>ref|NM_186091.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 759

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 281 ccgccgctgcctccaggtcc 300
           ||||||||||||||||||||
Sbjct: 184 ccgccgctgcctccaggtcc 165



to top

>ref|XM_604447.2| PREDICTED: Bos taurus similar to potassium inwardly-rectifying
           channel J3 (LOC526088), mRNA
          Length = 930

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 220 gctgctgctgcgggcccgggcccg 243
           ||||||||||||||||| ||||||
Sbjct: 112 gctgctgctgcgggccctggcccg 89



to top

>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 364    cgtgctgcggcgcctcgcgc 383
              ||||||||||||||||||||
Sbjct: 741627 cgtgctgcggcgcctcgcgc 741646



to top

>gb|AF517833.1| Morone saxatilis Hoxb3a protein (Hoxb3a) and Hoxb2a protein (Hoxb2a)
             genes, complete cds
          Length = 16902

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   cgctgctgctgcgggcccgg 238
             ||||||||||||||||||||
Sbjct: 15667 cgctgctgctgcgggcccgg 15648



to top

>gb|BC024304.1| Homo sapiens cDNA clone IMAGE:4900520, **** WARNING: chimeric clone
            ****
          Length = 2360

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 229  gcgggcccgggcccgcagcc 248
            ||||||||||||||||||||
Sbjct: 1950 gcgggcccgggcccgcagcc 1931



to top

>gb|AF540391.1| Sus scrofa potassium inwardly-rectifying channel 1 (KCNJ3) mRNA,
           partial cds
          Length = 459

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 220 gctgctgctgcgggcccgggcccg 243
           ||||||||||||||||| ||||||
Sbjct: 73  gctgctgctgcgggccctggcccg 50



to top

>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 364     cgtgctgcggcgcctcgcgc 383
               ||||||||||||||||||||
Sbjct: 2061924 cgtgctgcggcgcctcgcgc 2061943



to top

>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29
          Length = 248550

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 310    gccggttctcggcccgctgctcca 333
              |||||| |||||||||||||||||
Sbjct: 161429 gccggtcctcggcccgctgctcca 161406



to top

>ref|NM_002688.4| Homo sapiens septin 5 (SEPT5), mRNA
          Length = 3525

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 229  gcgggcccgggcccgcagcc 248
            ||||||||||||||||||||
Sbjct: 3143 gcgggcccgggcccgcagcc 3124



to top

>ref|NM_000407.4| Homo sapiens glycoprotein Ib (platelet), beta polypeptide (GP1BB),
           mRNA
          Length = 958

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 229 gcgggcccgggcccgcagcc 248
           ||||||||||||||||||||
Sbjct: 576 gcgggcccgggcccgcagcc 557



to top

>gb|AC000093.5| Homo sapiens Chromosome 22q11 Cosmid Clone carlaa, complete sequence
          Length = 42686

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 229   gcgggcccgggcccgcagcc 248
             ||||||||||||||||||||
Sbjct: 21013 gcgggcccgggcccgcagcc 20994



to top

>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 364    cgtgctgcggcgcctcgcgc 383
              ||||||||||||||||||||
Sbjct: 741509 cgtgctgcggcgcctcgcgc 741490



to top

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 281      ccgccgctgcctccaggtcc 300
                ||||||||||||||||||||
Sbjct: 28128896 ccgccgctgcctccaggtcc 28128877



to top

>gb|AC008744.6|AC008744 Homo sapiens chromosome 19 clone CTD-2561O20, complete sequence
          Length = 203200

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 189    cgctcaccaccatgctctgc 208
              ||||||||||||||||||||
Sbjct: 177675 cgctcaccaccatgctctgc 177656



to top

>dbj|AP003571.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0458E02
          Length = 154458

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 534    tgctcaccagcggcggccgc 553
              ||||||||||||||||||||
Sbjct: 122533 tgctcaccagcggcggccgc 122552



to top

>dbj|AP004274.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0450A04
          Length = 162545

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 281    ccgccgctgcctccaggtcc 300
              ||||||||||||||||||||
Sbjct: 112192 ccgccgctgcctccaggtcc 112173



to top

>emb|BX005473.5| Zebrafish DNA sequence from clone DKEY-148P7 in linkage group 1,
             complete sequence
          Length = 94966

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 93    cttgcagtacaaatgaagcatctc 116
             |||||||||||||| |||||||||
Sbjct: 84074 cttgcagtacaaattaagcatctc 84051



to top

>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 365     gtgctgcggcgcctcgcgcg 384
               ||||||||||||||||||||
Sbjct: 3860897 gtgctgcggcgcctcgcgcg 3860916



to top

>gb|AC005823.1|AC005823 Homo sapiens chromosome 17, clone hRPK.1018_N_14, complete sequence
          Length = 185116

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 75     aacattcccgatctttttct 94
              ||||||||||||||||||||
Sbjct: 111421 aacattcccgatctttttct 111440



to top

>gb|AF006988.1|HSCDCREL1 Homo sapiens septin (CDCrel-1) gene, alternatively spliced, complete
             cds, septin (CDCrel-1) gene, alternatively spliced,
             partial cds and platelet membrane glycoprotein Ib beta
             precursor (GPIb beta) gene, complete cds
          Length = 13728

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 229   gcgggcccgggcccgcagcc 248
             ||||||||||||||||||||
Sbjct: 13504 gcgggcccgggcccgcagcc 13485



to top

>gb|U59632.1|HSU59632 Homo sapiens H5 mRNA, partial cds; and platelet glycoprotein Ib beta
            chain mRNA, complete cds
          Length = 3171

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 229  gcgggcccgggcccgcagcc 248
            ||||||||||||||||||||
Sbjct: 2792 gcgggcccgggcccgcagcc 2773



to top

>gb|J03259.1|HUMGPIB Human platelet glycoprotein Ib beta chain mRNA, complete cds
          Length = 950

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 229 gcgggcccgggcccgcagcc 248
           ||||||||||||||||||||
Sbjct: 571 gcgggcccgggcccgcagcc 552



to top

>gb|AC099795.2| Homo sapiens chromosome 1 clone RP5-848E13, complete sequence
          Length = 120556

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   cctcagctcgctgctgctgc 230
             ||||||||||||||||||||
Sbjct: 58137 cctcagctcgctgctgctgc 58118



to top

>gb|L20860.1|HUMGLYIBBE Human glycoprotein Ib beta mRNA, complete cds
          Length = 2793

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 229  gcgggcccgggcccgcagcc 248
            ||||||||||||||||||||
Sbjct: 1800 gcgggcccgggcccgcagcc 1781



to top

>dbj|AB086231.1| Homo sapiens GP1BB gene for platelet glycoprotein Ib beta chain,
           partial cds
          Length = 614

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 229 gcgggcccgggcccgcagcc 248
           ||||||||||||||||||||
Sbjct: 520 gcgggcccgggcccgcagcc 501


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,752,301
Number of Sequences: 3902068
Number of extensions: 3752301
Number of successful extensions: 69969
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69179
Number of HSP's gapped (non-prelim): 784
length of query: 562
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 539
effective length of database: 17,143,297,704
effective search space: 9240237462456
effective search space used: 9240237462456
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top