ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart26f12 |
|---|---|
| Clone Library Name | barley_pub |
>CY561_MOUSE (Q60720) Cytochrome b561 (Cytochrome b-561)| Length = 250 Score = 106 bits (264), Expect = 5e-23 Identities = 51/115 (44%), Positives = 71/115 (61%) Frame = +2 Query: 227 WCIHFRGGLAFEAANKNLIFNVHPVLMLIGFIILGSEAIMVYKVFPGLNHDTAKLTHLIL 406 W +RGG+A+E++ L FNVHP+ M+IG I L +A++VY+VF T K+ H +L Sbjct: 33 WLGLYRGGIAWESS---LQFNVHPLCMVIGMIFLQGDALLVYRVFRREAKRTTKILHGLL 89 Query: 407 HAIAIVLGAVGIYCAFKFHNDSGIANLYSLHSWLGIGAISLYGIQWIFGFVTFFF 571 H A ++ VG+ F +H G A+LYSLHSW GI LY +QW+ GF F F Sbjct: 90 HVFAFIIALVGLVAVFDYHKKKGYADLYSLHSWCGILVFVLYFVQWLVGFSFFLF 144
>CY561_PONPY (Q5RCZ2) Cytochrome b561 (Cytochrome b-561)| Length = 251 Score = 106 bits (264), Expect = 5e-23 Identities = 52/119 (43%), Positives = 72/119 (60%) Frame = +2 Query: 215 MVLVWCIHFRGGLAFEAANKNLIFNVHPVLMLIGFIILGSEAIMVYKVFPGLNHDTAKLT 394 M W +RGG+A+E+ +L FN HP+ M+IG I L +A++VY+VF T K+ Sbjct: 30 MTGAWLGLYRGGIAWES---DLQFNAHPLCMVIGLIFLQGDALLVYRVFRNEAKRTTKVL 86 Query: 395 HLILHAIAIVLGAVGIYCAFKFHNDSGIANLYSLHSWLGIGAISLYGIQWIFGFVTFFF 571 H +LH A+V+ VG+ F +H G A+LYSLHSW GI LY +QW+ GF F F Sbjct: 87 HGLLHIFALVIALVGLVAVFDYHRKEGYADLYSLHSWCGILVFVLYFVQWLVGFSFFLF 145
>CY561_BOVIN (P10897) Cytochrome b561 (Cytochrome b-561)| Length = 252 Score = 106 bits (264), Expect = 5e-23 Identities = 52/119 (43%), Positives = 72/119 (60%) Frame = +2 Query: 215 MVLVWCIHFRGGLAFEAANKNLIFNVHPVLMLIGFIILGSEAIMVYKVFPGLNHDTAKLT 394 M W +RGG+A+E+A L FNVHP+ M+IG + L +A++VY+VF T K+ Sbjct: 31 MTGAWLGMYRGGIAWESA---LQFNVHPLCMIIGLVFLQGDALLVYRVFRNEAKRTTKVL 87 Query: 395 HLILHAIAIVLGAVGIYCAFKFHNDSGIANLYSLHSWLGIGAISLYGIQWIFGFVTFFF 571 H +LH A V+ VG+ F+ H G A+LYSLHSW GI +L+ QW+ GF F F Sbjct: 88 HGLLHVFAFVIALVGLVAVFEHHRKKGYADLYSLHSWCGILVFALFFAQWLVGFSFFLF 146
>CY561_SHEEP (Q95204) Cytochrome b561 (Cytochrome b-561)| Length = 252 Score = 105 bits (263), Expect = 7e-23 Identities = 52/119 (43%), Positives = 72/119 (60%) Frame = +2 Query: 215 MVLVWCIHFRGGLAFEAANKNLIFNVHPVLMLIGFIILGSEAIMVYKVFPGLNHDTAKLT 394 M W +RGG+A+E+A L FNVHP+ M+IG + L +A++VY+VF T K+ Sbjct: 31 MTGAWLGMYRGGIAWESA---LQFNVHPLCMVIGLVFLQGDALLVYRVFRNEAKRTTKVL 87 Query: 395 HLILHAIAIVLGAVGIYCAFKFHNDSGIANLYSLHSWLGIGAISLYGIQWIFGFVTFFF 571 H +LH A V+ VG+ F+ H G A+LYSLHSW GI +L+ QW+ GF F F Sbjct: 88 HGLLHVFAFVIALVGLVAVFEHHRKKGYADLYSLHSWCGILVFALFFAQWLVGFSFFLF 146
>CY561_HUMAN (P49447) Cytochrome b561 (Cytochrome b-561)| Length = 251 Score = 105 bits (262), Expect = 9e-23 Identities = 52/119 (43%), Positives = 71/119 (59%) Frame = +2 Query: 215 MVLVWCIHFRGGLAFEAANKNLIFNVHPVLMLIGFIILGSEAIMVYKVFPGLNHDTAKLT 394 M W +RGG+A+E+ +L FN HP+ M+IG I L A++VY+VF T K+ Sbjct: 30 MTGAWLGLYRGGIAWES---DLQFNAHPLCMVIGLIFLQGNALLVYRVFRNEAKRTTKVL 86 Query: 395 HLILHAIAIVLGAVGIYCAFKFHNDSGIANLYSLHSWLGIGAISLYGIQWIFGFVTFFF 571 H +LH A+V+ VG+ F +H G A+LYSLHSW GI LY +QW+ GF F F Sbjct: 87 HGLLHIFALVIALVGLVAVFDYHRKKGYADLYSLHSWCGILVFVLYFVQWLVGFSFFLF 145
>CY561_PIG (Q95245) Cytochrome b561 (Cytochrome b-561)| Length = 252 Score = 105 bits (262), Expect = 9e-23 Identities = 51/115 (44%), Positives = 71/115 (61%) Frame = +2 Query: 227 WCIHFRGGLAFEAANKNLIFNVHPVLMLIGFIILGSEAIMVYKVFPGLNHDTAKLTHLIL 406 W +RGG+A+E+A L FNVHP+ M+IG + L +A++VY+VF T K+ H +L Sbjct: 35 WLGAYRGGIAWESA---LQFNVHPLCMIIGLVFLQGDALLVYRVFRNEAKRTTKILHGLL 91 Query: 407 HAIAIVLGAVGIYCAFKFHNDSGIANLYSLHSWLGIGAISLYGIQWIFGFVTFFF 571 H +A V+ VG+ F +H GIA+LYSLHSW GI L+ QW+ G F F Sbjct: 92 HVLAFVIALVGLVAVFDYHRKKGIADLYSLHSWCGILVFVLFLAQWLVGLGFFLF 146
>CY561_XENLA (Q91577) Cytochrome b561 (Cytochrome b-561)| Length = 247 Score = 98.6 bits (244), Expect = 1e-20 Identities = 43/97 (44%), Positives = 64/97 (65%) Frame = +2 Query: 278 LIFNVHPVLMLIGFIILGSEAIMVYKVFPGLNHDTAKLTHLILHAIAIVLGAVGIYCAFK 457 L FNVHP+ M++G + L EA++VY+VF + K+ H +LH +A+V+ VG+ F+ Sbjct: 48 LQFNVHPLCMVLGMVFLCGEALLVYRVFRHETKRSTKILHGVLHIMALVISLVGVIAVFQ 107 Query: 458 FHNDSGIANLYSLHSWLGIGAISLYGIQWIFGFVTFF 568 +H +G ++YSLHSW GI +LY +QWI GF FF Sbjct: 108 YHQANGYPDMYSLHSWCGIVTFTLYILQWIIGFSLFF 144
>CY561_CAEEL (P34465) Putative cytochrome b561 (Cytochrome b-561)| Length = 266 Score = 91.7 bits (226), Expect = 1e-18 Identities = 45/127 (35%), Positives = 70/127 (55%), Gaps = 8/127 (6%) Frame = +2 Query: 215 MVLVWCIHFRGGLAFEAANKNLIFNVHPVLMLIGFIILGSEAIMVYKVFPGLNHDTAKLT 394 +V +W F G A+ + + FN HP M++G + L EA++VY+VF +K Sbjct: 38 LVTIWMSKFESGFAWNE-DPDKEFNYHPTFMIMGMVFLFGEALLVYRVFRNERKKFSKTL 96 Query: 395 HLILHAIAIVLGAVGIYCAFKFH--------NDSGIANLYSLHSWLGIGAISLYGIQWIF 550 H+ILH+ +V + + F +H N + I NL SLHSW+G+ + LY Q+I Sbjct: 97 HVILHSCVLVFMLMALKAVFDYHNLHKDPSGNPAPIVNLVSLHSWIGLSVVILYFAQYIV 156 Query: 551 GFVTFFF 571 GF+T+FF Sbjct: 157 GFITYFF 163
>C56D2_HUMAN (O14569) Cytochrome b561 domain-containing protein 2 (Putative| tumor suppressor protein 101F6) Length = 222 Score = 42.4 bits (98), Expect = 0.001 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 4/91 (4%) Frame = +2 Query: 281 IFNVHPVLMLIGFIILGSEAIMVYKVFPGLNHDTAK----LTHLILHAIAIVLGAVGIYC 448 +F+ HPVLM + F L +EA++V+ L H ++ H +L +A++ +G+ Sbjct: 44 LFSWHPVLMSLAFSFLMTEALLVFSPESSLLHSLSRKGRARCHWVLQLLALLCALLGLGL 103 Query: 449 AFKFHNDSGIANLYSLHSWLGIGAISLYGIQ 541 G A+L + H G+ A+ G+Q Sbjct: 104 VILHKEQLGKAHLVTRHGQAGLLAVLWAGLQ 134
>C56D1_HUMAN (Q8N8Q1) Cytochrome b561 domain-containing protein 1| Length = 229 Score = 41.2 bits (95), Expect = 0.002 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 4/95 (4%) Frame = +2 Query: 281 IFNVHPVLMLIGFIILGSEAIMVYKVFPGLNHDTAKLTHLILH----AIAIVLGAVGIYC 448 +F+ HPV M + F + +EAI+++ L ++ + LH +AI+ A+G+ Sbjct: 51 LFSWHPVFMALAFCLCMAEAILLFSPEHSLFFFCSRKARIRLHWAGQTLAILCAALGLGF 110 Query: 449 AFKFHNDSGIANLYSLHSWLGIGAISLYGIQWIFG 553 S + +L S HSW+G + +Q + G Sbjct: 111 IISSRTRSELPHLVSWHSWVGALTLLATAVQALCG 145
>C56D2_RAT (Q641Y1) Cytochrome b561 domain-containing protein 2| Length = 222 Score = 39.3 bits (90), Expect = 0.008 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 4/91 (4%) Frame = +2 Query: 281 IFNVHPVLMLIGFIILGSEAIMVY----KVFPGLNHDTAKLTHLILHAIAIVLGAVGIYC 448 +F+ HPVLM + F L +EA++++ + L+ H +L +A++ +G+ Sbjct: 44 LFSWHPVLMSLAFSFLMTEALLMFSPESSLLRSLSRKVRARCHWVLQLLALLCALLGLGL 103 Query: 449 AFKFHNDSGIANLYSLHSWLGIGAISLYGIQ 541 G A+L + H G+ A+ G+Q Sbjct: 104 VILHKEQLGKAHLATRHGQAGLLAVLWAGLQ 134
>C56D2_MOUSE (Q9WUE3) Cytochrome b561 domain-containing protein 2 (Putative| tumor suppressor protein 101F6) Length = 222 Score = 39.3 bits (90), Expect = 0.008 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 4/91 (4%) Frame = +2 Query: 281 IFNVHPVLMLIGFIILGSEAIMVY----KVFPGLNHDTAKLTHLILHAIAIVLGAVGIYC 448 +F+ HPVLM + F L +EA++++ + L+ H +L +A++ +G+ Sbjct: 44 LFSWHPVLMSLAFSFLMTEALLMFSPESSLLRSLSRKVRARCHWVLQLLALLCALLGLGL 103 Query: 449 AFKFHNDSGIANLYSLHSWLGIGAISLYGIQ 541 G A+L + H G+ A+ G+Q Sbjct: 104 VILHKEQLGKAHLTTRHGQAGLLAVLWAGLQ 134
>C56D2_BOVIN (Q5E965) Cytochrome b561 domain-containing protein 2| Length = 222 Score = 39.3 bits (90), Expect = 0.008 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 4/91 (4%) Frame = +2 Query: 281 IFNVHPVLMLIGFIILGSEAIMVY----KVFPGLNHDTAKLTHLILHAIAIVLGAVGIYC 448 +F+ HPVLM + F L +EA++V+ + L+ H +L +A++ +G+ Sbjct: 44 LFSWHPVLMSLAFSFLMTEALLVFSPESSLLRSLSRKGRARCHWVLQLLALLCALLGLGL 103 Query: 449 AFKFHNDSGIANLYSLHSWLGIGAISLYGIQ 541 G A+L + H G+ A+ G+Q Sbjct: 104 VILHKEQLGKAHLATWHGRAGLLAVLWAGLQ 134
>5HT2C_RAT (P08909) 5-hydroxytryptamine 2C receptor (5-HT-2C) (Serotonin| receptor 2C) (5-HT2C) (5-HTR2C) (5HT-1C) Length = 460 Score = 30.8 bits (68), Expect = 2.9 Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 4/105 (3%) Frame = +2 Query: 59 GRECAAPAPTGDQRKKKKEEDAGVRGEMAIALGVKATPFTYXXXXXXXXXXXMVLVWCIH 238 G E AP P DQ+ ++K+++ RG M K +++WC Sbjct: 275 GEEENAPNPNPDQKPRRKKKEKRPRGTMQAINNEKK-----ASKVLGIVFFVFLIMWCPF 329 Query: 239 F----RGGLAFEAANKNLIFNVHPVLMLIGFIILGSEAIMVYKVF 361 F L +A N+ L+ + V + IG++ G +VY +F Sbjct: 330 FITNILSVLCGKACNQKLMEKLLNVFVWIGYVCSGINP-LVYTLF 373
>RNH2_XANOM (Q2P4B9) Ribonuclease HII (EC 3.1.26.4) (RNase HII)| Length = 246 Score = 30.0 bits (66), Expect = 4.9 Identities = 13/38 (34%), Positives = 24/38 (63%) Frame = +1 Query: 460 PQRQRHRKPLQLALLARDRGHFSLRNPVDIRVRDLLLP 573 PQ +R P++LAL R++G ++ +P ++V L+ P Sbjct: 208 PQHRRSFAPVRLALEGREQGSAAIGDPEQLQVAQLVAP 245
>RNH2_XANOR (Q5H1F4) Ribonuclease HII (EC 3.1.26.4) (RNase HII)| Length = 252 Score = 30.0 bits (66), Expect = 4.9 Identities = 13/38 (34%), Positives = 24/38 (63%) Frame = +1 Query: 460 PQRQRHRKPLQLALLARDRGHFSLRNPVDIRVRDLLLP 573 PQ +R P++LAL R++G ++ +P ++V L+ P Sbjct: 214 PQHRRSFAPVRLALEGREQGSAAIGDPEQLQVAQLVAP 251
>RPOP_MAIZE (P10581) Probable DNA-directed RNA polymerase (EC 2.7.7.6) (S-2 DNA| ORF1) Length = 1098 Score = 29.6 bits (65), Expect = 6.4 Identities = 14/48 (29%), Positives = 26/48 (54%) Frame = -3 Query: 403 DQVGQLGSIVVQSRKYLVDHYGFTAEDNETDQHKNRVDVEDEVLVGRL 260 D + ++G ++ K+L DH A NE Q+K+ VE+ ++ R+ Sbjct: 933 DSIFRMGHPLIIINKFLFDHILIPAIQNEHPQNKHLFSVEERSMLDRM 980
>APOB_HUMAN (P04114) Apolipoprotein B-100 precursor (Apo B-100) [Contains:| Apolipoprotein B-48 (Apo B-48)] Length = 4563 Score = 29.3 bits (64), Expect = 8.3 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = -3 Query: 361 KYLVDHYGFTAEDNETDQHKNRVDVEDEVLVGRLEGEAAAEVDA 230 K LVDH+G+T +D N + + E L+ L+ + E A Sbjct: 732 KVLVDHFGYTKDDKHEQDMVNGIMLSVEKLIKDLKSKEVPEARA 775
>PTTBC_ECOLI (P36672) PTS system trehalose-specific EIIBC component (EIIBC-Tre)| (EII-Tre) [Includes: Trehalose-specific phosphotransferase enzyme IIB component (EC 2.7.1.69) (PTS system trehalose-specific EIIB component); Trehalose permease IIC component Length = 473 Score = 29.3 bits (64), Expect = 8.3 Identities = 15/53 (28%), Positives = 28/53 (52%) Frame = +2 Query: 398 LILHAIAIVLGAVGIYCAFKFHNDSGIANLYSLHSWLGIGAISLYGIQWIFGF 556 + L IA +GI + + HN+ I+ ++ +WLG+ ++YGI + F Sbjct: 345 IALSNIAQGSAVIGIIISSRKHNEREISVPAAISAWLGVTEPAMYGINLKYRF 397 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,486,424 Number of Sequences: 219361 Number of extensions: 1109367 Number of successful extensions: 3618 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3540 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3612 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4815021120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
