ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart26f10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y4597_ARATH (P0C042) Hypothetical protein At4g15970 119 6e-27
2HEMN_AQUAE (O67886) Oxygen-independent coproporphyrinogen III ox... 30 6.0
3RGS14_HUMAN (O43566) Regulator of G-protein signaling 14 (RGS14) 29 7.8
4MYO3A_MOUSE (Q8K3H5) Myosin IIIA (EC 2.7.11.1) 29 7.8

>Y4597_ARATH (P0C042) Hypothetical protein At4g15970|
          Length = 367

 Score =  119 bits (298), Expect = 6e-27
 Identities = 56/112 (50%), Positives = 77/112 (68%), Gaps = 1/112 (0%)
 Frame = +3

Query: 189 QTATADRTVIMTQINAAWTKPGSLLDLFFESFRTGEGGVARLLDHLVIVTMDPAAYAGCQ 368
           + AT D+TVI+T +N AW++P S  DLF  SF  G+G    LL HLV+  +D  AY+ C 
Sbjct: 48  EAATEDKTVIITTLNKAWSEPNSTFDLFLHSFHVGKG-TKPLLRHLVVACLDEEAYSRCS 106

Query: 369 LVHRH-CYFLRTTGVDYRGEKFFMSKDYLEMMWGRNKFQQTILELGYXFLFT 521
            VH H CYF++T G+D+ G+K FM+ DYL+MMW R +F  T+L+L Y F+FT
Sbjct: 107 EVHPHRCYFMKTPGIDFAGDKMFMTPDYLKMMWRRIEFLGTLLKLRYNFIFT 158



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>HEMN_AQUAE (O67886) Oxygen-independent coproporphyrinogen III oxidase (EC|
           1.3.99.22) (Coproporphyrinogenase) (Coprogen oxidase)
          Length = 456

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +3

Query: 105 IYLHSKHPSAGSNHLLSQERSARRWRNQQTATADRTVIMTQINAAWTKPGSLLDLFFESF 284
           +Y+   H +   + L   +R    WRN Q  T  + V +    A  T  G L D +F+++
Sbjct: 283 VYIGMDHFAKPEDELAVAQRKGELWRNFQGYTTKKGVELLGFGA--TSIGMLYDSYFQNW 340

Query: 285 RT 290
           +T
Sbjct: 341 KT 342



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>RGS14_HUMAN (O43566) Regulator of G-protein signaling 14 (RGS14)|
          Length = 594

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 56  STPCRANSQPHRYLSIYLPPQQASLGRIKPSIISRALCTPVAQ 184
           ST   + S+P +Y  +YLP   ASL   +P +  R +   + +
Sbjct: 291 STEGESESRPGKYCCVYLPDGTASLALARPGLTIRDMLAGICE 333



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>MYO3A_MOUSE (Q8K3H5) Myosin IIIA (EC 2.7.11.1)|
          Length = 1613

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +3

Query: 72   PIPSRIAIYLSIYLHSKHPSAGSNHLLSQERSARRWRNQQTATADRTVIMTQIN 233
            P+P     + ++ +HSK+ S+     L ++R A  ++NQ+  ++   V  T  N
Sbjct: 1336 PVPQAQEEHKAVSIHSKYQSSKKKQQLGKDRLAPPFKNQKILSSSTEVAKTTHN 1389


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,618,821
Number of Sequences: 219361
Number of extensions: 974741
Number of successful extensions: 3137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3134
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4528412720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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