Clone Name | bart26e08 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | CO410_WHEAT (P46524) Dehydrin COR410 (Cold-induced COR410 protein) | 102 | 7e-22 | 2 | PIP12_ORYSA (Q7XSQ9) Probable aquaporin PIP1.2 (Plasma membrane ... | 31 | 2.6 | 3 | RDRP_IBDVA (P12918) RNA-directed RNA polymerase (EC 2.7.7.48) (R... | 29 | 7.6 | 4 | RDRP_IBDV (Q9Q6Q5) RNA-directed RNA polymerase (EC 2.7.7.48) (RD... | 29 | 7.6 |
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>CO410_WHEAT (P46524) Dehydrin COR410 (Cold-induced COR410 protein)| Length = 262 Score = 102 bits (254), Expect = 7e-22 Identities = 71/159 (44%), Positives = 73/159 (45%), Gaps = 8/159 (5%) Frame = +1 Query: 94 MEDERSTQSYQGAEA-DQVEVTDRXXXXXXXXXXXXXXXXXXXXXXVTGMXXXXXXX--- 261 MEDERSTQSYQG EA +QVEVTDR VTGM Sbjct: 1 MEDERSTQSYQGGEAAEQVEVTDRGLLGNLLGKKKAEEDKEKEEELVTGMEKVSVEEPEV 60 Query: 262 -XXXXXDGEKKETLFSKLHRXXXXXXXXXXXXXXXXVIDENXXXXXXXXXXXXXXXXXXX 438 DGEKKETLFSKLHR VID+N Sbjct: 61 KKEEHEDGEKKETLFSKLHRSSSSSSSSSDEEEEE-VIDDNGEVIKRKKKKGLKEKLQGK 119 Query: 439 XXXXXDNEAEHVTGLPAPMAPASVQT---HHDTDVVVEK 546 D E EHVTGLPAP APASVQT HHDTDVVVEK Sbjct: 120 LPGHKDTEGEHVTGLPAPAAPASVQTHGGHHDTDVVVEK 158
>PIP12_ORYSA (Q7XSQ9) Probable aquaporin PIP1.2 (Plasma membrane intrinsic| protein 1.2) (OsPIP1.2) Length = 282 Score = 30.8 bits (68), Expect = 2.6 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -1 Query: 544 SRRRRRCHGESEQTRGPSVRVGPSRAQP 461 SRRRRRC + +RGPS G + P Sbjct: 29 SRRRRRCSSQGSSSRGPSTAQGSPSSWP 56
>RDRP_IBDVA (P12918) RNA-directed RNA polymerase (EC 2.7.7.48) (RDRP) (Protein| VP1) Length = 878 Score = 29.3 bits (64), Expect = 7.6 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 6/36 (16%) Frame = -2 Query: 90 RDRSVQLK----TRGS*RKQRIS--KDYWFLACGFL 1 R+ S LK T+GS +K+ +S DYW+L+CG L Sbjct: 282 RELSALLKQGAGTKGSNKKKLLSMLSDYWYLSCGLL 317
>RDRP_IBDV (Q9Q6Q5) RNA-directed RNA polymerase (EC 2.7.7.48) (RDRP) (Protein| VP1) Length = 881 Score = 29.3 bits (64), Expect = 7.6 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 6/36 (16%) Frame = -2 Query: 90 RDRSVQLK----TRGS*RKQRIS--KDYWFLACGFL 1 R+ S LK T+GS +K+ +S DYW+L+CG L Sbjct: 283 RELSTLLKQGAGTKGSNKKKLLSMLSDYWYLSCGLL 318 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.131 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,646,083 Number of Sequences: 219361 Number of extensions: 439769 Number of successful extensions: 1065 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 1039 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1061 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4373119116 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)