ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart26e08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CO410_WHEAT (P46524) Dehydrin COR410 (Cold-induced COR410 protein) 102 7e-22
2PIP12_ORYSA (Q7XSQ9) Probable aquaporin PIP1.2 (Plasma membrane ... 31 2.6
3RDRP_IBDVA (P12918) RNA-directed RNA polymerase (EC 2.7.7.48) (R... 29 7.6
4RDRP_IBDV (Q9Q6Q5) RNA-directed RNA polymerase (EC 2.7.7.48) (RD... 29 7.6

>CO410_WHEAT (P46524) Dehydrin COR410 (Cold-induced COR410 protein)|
          Length = 262

 Score =  102 bits (254), Expect = 7e-22
 Identities = 71/159 (44%), Positives = 73/159 (45%), Gaps = 8/159 (5%)
 Frame = +1

Query: 94  MEDERSTQSYQGAEA-DQVEVTDRXXXXXXXXXXXXXXXXXXXXXXVTGMXXXXXXX--- 261
           MEDERSTQSYQG EA +QVEVTDR                      VTGM          
Sbjct: 1   MEDERSTQSYQGGEAAEQVEVTDRGLLGNLLGKKKAEEDKEKEEELVTGMEKVSVEEPEV 60

Query: 262 -XXXXXDGEKKETLFSKLHRXXXXXXXXXXXXXXXXVIDENXXXXXXXXXXXXXXXXXXX 438
                 DGEKKETLFSKLHR                VID+N                   
Sbjct: 61  KKEEHEDGEKKETLFSKLHRSSSSSSSSSDEEEEE-VIDDNGEVIKRKKKKGLKEKLQGK 119

Query: 439 XXXXXDNEAEHVTGLPAPMAPASVQT---HHDTDVVVEK 546
                D E EHVTGLPAP APASVQT   HHDTDVVVEK
Sbjct: 120 LPGHKDTEGEHVTGLPAPAAPASVQTHGGHHDTDVVVEK 158



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>PIP12_ORYSA (Q7XSQ9) Probable aquaporin PIP1.2 (Plasma membrane intrinsic|
           protein 1.2) (OsPIP1.2)
          Length = 282

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 544 SRRRRRCHGESEQTRGPSVRVGPSRAQP 461
           SRRRRRC  +   +RGPS   G   + P
Sbjct: 29  SRRRRRCSSQGSSSRGPSTAQGSPSSWP 56



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>RDRP_IBDVA (P12918) RNA-directed RNA polymerase (EC 2.7.7.48) (RDRP) (Protein|
           VP1)
          Length = 878

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 6/36 (16%)
 Frame = -2

Query: 90  RDRSVQLK----TRGS*RKQRIS--KDYWFLACGFL 1
           R+ S  LK    T+GS +K+ +S   DYW+L+CG L
Sbjct: 282 RELSALLKQGAGTKGSNKKKLLSMLSDYWYLSCGLL 317



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>RDRP_IBDV (Q9Q6Q5) RNA-directed RNA polymerase (EC 2.7.7.48) (RDRP) (Protein|
           VP1)
          Length = 881

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 6/36 (16%)
 Frame = -2

Query: 90  RDRSVQLK----TRGS*RKQRIS--KDYWFLACGFL 1
           R+ S  LK    T+GS +K+ +S   DYW+L+CG L
Sbjct: 283 RELSTLLKQGAGTKGSNKKKLLSMLSDYWYLSCGLL 318


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.131    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,646,083
Number of Sequences: 219361
Number of extensions: 439769
Number of successful extensions: 1065
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4373119116
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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