ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart26e07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK073591.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051M04, full insert sequence Length = 1520 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Plus Query: 475 ggcgcggccatcttcggcggcggcccgttct 505 ||||||||||||||||||||||||||||||| Sbjct: 654 ggcgcggccatcttcggcggcggcccgttct 684
>emb|AJ697851.1| Triticum aestivum xi-IB gene for xylanase inhibitor precursor, exon 1 Length = 1206 Score = 54.0 bits (27), Expect = 5e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 423 cacgcagaaggtggccaactcgttcgcgctctgccttccaagcgacggcgtgggcgcggc 482 |||||||||||| |||||| |||| |||||||| || | || |||| | |||| ||| Sbjct: 531 cacgcagaaggtcgccaacaggttcctcctctgcctccccaccggcggccttggcgtggc 590 Query: 483 catcttcggcggcggcccg 501 ||||||||||||||||||| Sbjct: 591 catcttcggcggcggcccg 609
>dbj|AB178471.1| Triticum aestivum Taxi-III gene for xylanase inhibitor, complete cds, upstream region Length = 2322 Score = 54.0 bits (27), Expect = 5e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 423 cacgcagaaggtggccaactcgttcgcgctctgccttccaagcgacggcgtgggcgcggc 482 |||||||||||| |||||| |||| |||||||| || | || |||| | |||| ||| Sbjct: 1607 cacgcagaaggtcgccaacaggttcctcctctgcctccccaccggcggccttggcgtggc 1666 Query: 483 catcttcggcggcggcccg 501 ||||||||||||||||||| Sbjct: 1667 catcttcggcggcggcccg 1685
>dbj|AB114627.1| Triticum aestivum Taxi-III mRNA for xylanase inhibitor TAXI-III, complete cds Length = 1411 Score = 54.0 bits (27), Expect = 5e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 423 cacgcagaaggtggccaactcgttcgcgctctgccttccaagcgacggcgtgggcgcggc 482 |||||||||||| |||||| |||| |||||||| || | || |||| | |||| ||| Sbjct: 610 cacgcagaaggtcgccaacaggttcctcctctgcctccccaccggcggccttggcgtggc 669 Query: 483 catcttcggcggcggcccg 501 ||||||||||||||||||| Sbjct: 670 catcttcggcggcggcccg 688
>ref|NM_190067.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1305 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 475 ggcgcggccatcttcggcggcggcccgttc 504 ||||||||||||||||||||||| |||||| Sbjct: 634 ggcgcggccatcttcggcggcgggccgttc 663
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 475 ggcgcggccatcttcggcggcggcccgttc 504 ||||||||||||||||||||||| |||||| Sbjct: 41119550 ggcgcggccatcttcggcggcgggccgttc 41119521 Score = 50.1 bits (25), Expect = 0.007 Identities = 75/92 (81%), Gaps = 6/92 (6%) Strand = Plus / Minus Query: 425 cgcagaaggtggccaactcgttcgcgctctgccttccaa------gcgacggcgtgggcg 478 |||||||||| |||||| ||||||||||||||| || | ||| ||||| |||| Sbjct: 41132417 cgcagaaggtcgccaacaagttcgcgctctgcctccccagcggcggcggcggcgacggcg 41132358 Query: 479 cggccatcttcggcggcggcccgttcttcctc 510 ||| |||||||||||||||||| |||||||| Sbjct: 41132357 tggcgatcttcggcggcggcccgctcttcctc 41132326 Score = 48.1 bits (24), Expect = 0.029 Identities = 27/28 (96%) Strand = Plus / Minus Query: 474 gggcgcggccatcttcggcggcggcccg 501 ||||| |||||||||||||||||||||| Sbjct: 41135134 gggcgtggccatcttcggcggcggcccg 41135107 Score = 44.1 bits (22), Expect = 0.45 Identities = 46/54 (85%) Strand = Plus / Minus Query: 280 tcggccaactccaccgacggcagcaacccgctgtccccggtctcattcgccgcc 333 ||||| ||| |||||||||||| |||||||| | |||||| || ||||||||| Sbjct: 41132580 tcggcgaacgccaccgacggcaagaacccgctctacccggtgtcgttcgccgcc 41132527 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Minus Query: 485 tcttcggcggcggcccgttcttcctc 510 |||||||||||||||||||| ||||| Sbjct: 41126717 tcttcggcggcggcccgttcgtcctc 41126692 Score = 40.1 bits (20), Expect = 7.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 290 ccaccgacggcagcaacccgctgtccccggtc 321 ||||| |||||||||||||||| | ||||||| Sbjct: 41126918 ccaccaacggcagcaacccgctctacccggtc 41126887
>dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0504E02 Length = 137468 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 475 ggcgcggccatcttcggcggcggcccgttc 504 ||||||||||||||||||||||| |||||| Sbjct: 16605 ggcgcggccatcttcggcggcgggccgttc 16576 Score = 50.1 bits (25), Expect = 0.007 Identities = 75/92 (81%), Gaps = 6/92 (6%) Strand = Plus / Minus Query: 425 cgcagaaggtggccaactcgttcgcgctctgccttccaa------gcgacggcgtgggcg 478 |||||||||| |||||| ||||||||||||||| || | ||| ||||| |||| Sbjct: 29472 cgcagaaggtcgccaacaagttcgcgctctgcctccccagcggcggcggcggcgacggcg 29413 Query: 479 cggccatcttcggcggcggcccgttcttcctc 510 ||| |||||||||||||||||| |||||||| Sbjct: 29412 tggcgatcttcggcggcggcccgctcttcctc 29381 Score = 48.1 bits (24), Expect = 0.029 Identities = 27/28 (96%) Strand = Plus / Minus Query: 474 gggcgcggccatcttcggcggcggcccg 501 ||||| |||||||||||||||||||||| Sbjct: 32189 gggcgtggccatcttcggcggcggcccg 32162 Score = 44.1 bits (22), Expect = 0.45 Identities = 46/54 (85%) Strand = Plus / Minus Query: 280 tcggccaactccaccgacggcagcaacccgctgtccccggtctcattcgccgcc 333 ||||| ||| |||||||||||| |||||||| | |||||| || ||||||||| Sbjct: 29635 tcggcgaacgccaccgacggcaagaacccgctctacccggtgtcgttcgccgcc 29582 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Minus Query: 485 tcttcggcggcggcccgttcttcctc 510 |||||||||||||||||||| ||||| Sbjct: 23772 tcttcggcggcggcccgttcgtcctc 23747 Score = 40.1 bits (20), Expect = 7.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 290 ccaccgacggcagcaacccgctgtccccggtc 321 ||||| |||||||||||||||| | ||||||| Sbjct: 23973 ccaccaacggcagcaacccgctctacccggtc 23942
>dbj|AK111477.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-185-A02, full insert sequence Length = 1075 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 475 ggcgcggccatcttcggcggcggcccgttc 504 ||||||||||||||||||||||| |||||| Sbjct: 745 ggcgcggccatcttcggcggcgggccgttc 716
>dbj|AK063356.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-C06, full insert sequence Length = 1372 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 475 ggcgcggccatcttcggcggcggcccgttc 504 ||||||||||||||||||||||| |||||| Sbjct: 657 ggcgcggccatcttcggcggcgggccgttc 686
>gb|AY106084.1| Zea mays PCO072275 mRNA sequence Length = 1307 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 464 gcgacggcgtgggcgcggccatcttcggcggcggcccg 501 ||||| |||| |||| |||||||||||||||||||||| Sbjct: 540 gcgacagcgtcggcgtggccatcttcggcggcggcccg 577 Score = 44.1 bits (22), Expect = 0.45 Identities = 43/50 (86%) Strand = Plus / Plus Query: 274 acgctctcggccaactccaccgacggcagcaacccgctgtccccggtctc 323 ||||| || |||||| ||||||||||| |||||||||| ||||||||| Sbjct: 305 acgctatccgccaacgccaccgacggccagaacccgctgttcccggtctc 354
>ref|NM_190071.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1275 Score = 50.1 bits (25), Expect = 0.007 Identities = 75/92 (81%), Gaps = 6/92 (6%) Strand = Plus / Plus Query: 425 cgcagaaggtggccaactcgttcgcgctctgccttccaagcgacggcgtgggcgc----- 479 |||||||||| |||||| ||||||||||||||| || |||| ||||| |||| Sbjct: 572 cgcagaaggtcgccaacaagttcgcgctctgcctccccagcggcggcggcggcgacggcg 631 Query: 480 -ggccatcttcggcggcggcccgttcttcctc 510 ||| |||||||||||||||||| |||||||| Sbjct: 632 tggcgatcttcggcggcggcccgctcttcctc 663 Score = 44.1 bits (22), Expect = 0.45 Identities = 46/54 (85%) Strand = Plus / Plus Query: 280 tcggccaactccaccgacggcagcaacccgctgtccccggtctcattcgccgcc 333 ||||| ||| |||||||||||| |||||||| | |||||| || ||||||||| Sbjct: 409 tcggcgaacgccaccgacggcaagaacccgctctacccggtgtcgttcgccgcc 462
>emb|AJ581532.1|SCE581532 Secale cereale xi-II/III gene for xylanase inhibitor Length = 1245 Score = 50.1 bits (25), Expect = 0.007 Identities = 64/77 (83%) Strand = Plus / Plus Query: 425 cgcagaaggtggccaactcgttcgcgctctgccttccaagcgacggcgtgggcgcggcca 484 |||||||||| |||||| |||| |||||||| || | || ||||| |||| ||||| Sbjct: 532 cgcagaaggtcgccaacaggttcttcctctgcctccccaccggcggcgctggcgtggcca 591 Query: 485 tcttcggcggcggcccg 501 ||||||||||||||||| Sbjct: 592 tcttcggcggcggcccg 608
>ref|XM_520144.1| PREDICTED: Pan troglodytes similar to coronin, actin binding protein, 2A; coronin, actin-binding protein, 2A; coronin 2A; coronin-like protein B; WD protein IR10; WD-repeat protein 2 (LOC464607), mRNA Length = 1501 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Plus Query: 327 cgccgccaccgccacctgcgcggc 350 |||||||||||||||||||||||| Sbjct: 25 cgccgccaccgccacctgcgcggc 48
>ref|NM_190072.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1260 Score = 48.1 bits (24), Expect = 0.029 Identities = 27/28 (96%) Strand = Plus / Plus Query: 474 gggcgcggccatcttcggcggcggcccg 501 ||||| |||||||||||||||||||||| Sbjct: 630 gggcgtggccatcttcggcggcggcccg 657
>ref|NM_052820.2| Homo sapiens coronin, actin binding protein, 2A (CORO2A), transcript variant 2, mRNA Length = 2265 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Plus Query: 327 cgccgccaccgccacctgcgcggc 350 |||||||||||||||||||||||| Sbjct: 49 cgccgccaccgccacctgcgcggc 72
>emb|AL137073.13| Human DNA sequence from clone RP11-404F11 on chromosome 9p23-24.1 Contains a novel gene encoding a protein similar to bacterial N-acetylneuraminic acid condensing enzyme (NEUB) and 3' end of the TBCID2 gene, a TRIM14 gene encoding tripartite motif-containing 14 (KIAA0129), the CORO2A gene encoding Coronin 2A (actin-binding protein), TBC1D2 gene encoding TBC1 domain family, member 2 (PARIS1, PARIS-1,DKFZP761D1823, DKFZp761D1823), and 4 CpG islands, complete sequence Length = 201300 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Minus Query: 327 cgccgccaccgccacctgcgcggc 350 |||||||||||||||||||||||| Sbjct: 171764 cgccgccaccgccacctgcgcggc 171741
>dbj|AK105806.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-B07, full insert sequence Length = 1404 Score = 48.1 bits (24), Expect = 0.029 Identities = 27/28 (96%) Strand = Plus / Plus Query: 474 gggcgcggccatcttcggcggcggcccg 501 ||||| |||||||||||||||||||||| Sbjct: 642 gggcgtggccatcttcggcggcggcccg 669
>gb|BC011690.2| Homo sapiens coronin, actin binding protein, 2A, transcript variant 2, mRNA (cDNA clone MGC:19551 IMAGE:3350035), complete cds Length = 2265 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Plus Query: 327 cgccgccaccgccacctgcgcggc 350 |||||||||||||||||||||||| Sbjct: 49 cgccgccaccgccacctgcgcggc 72
>dbj|AB209809.1| Homo sapiens mRNA for coronin, actin binding protein, 2A variant protein Length = 1679 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Plus Query: 327 cgccgccaccgccacctgcgcggc 350 |||||||||||||||||||||||| Sbjct: 54 cgccgccaccgccacctgcgcggc 77
>emb|AJ697850.1| Triticum aestivum partial xi-IIB gene for xylanase inhibitor precursor, exon 1 Length = 1170 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 475 ggcgcggccatcttcggcggcggcccg 501 |||| |||||||||||||||||||||| Sbjct: 526 ggcgtggccatcttcggcggcggcccg 552
>emb|AJ697849.1| Triticum aestivum partial xi-IIA gene for xylanase inhibitor precursor, exon 1 Length = 1170 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 475 ggcgcggccatcttcggcggcggcccg 501 |||| |||||||||||||||||||||| Sbjct: 526 ggcgtggccatcttcggcggcggcccg 552
>gb|BT009260.1| Triticum aestivum clone wlk4.pk0017.d2:fis, full insert mRNA sequence Length = 1343 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 475 ggcgcggccatcttcggcggcggcccg 501 |||| |||||||||||||||||||||| Sbjct: 762 ggcgtggccatcttcggcggcggcccg 736
>dbj|AB114628.1| Triticum aestivum Taxi-IV mRNA for xylanase inhibitor TAXI-IV, complete cds Length = 1387 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 475 ggcgcggccatcttcggcggcggcccg 501 |||| |||||||||||||||||||||| Sbjct: 634 ggcgtggccatcttcggcggcggcccg 660
>ref|NM_190069.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1269 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 485 tcttcggcggcggcccgttcttcctc 510 |||||||||||||||||||| ||||| Sbjct: 626 tcttcggcggcggcccgttcgtcctc 651 Score = 40.1 bits (20), Expect = 7.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 290 ccaccgacggcagcaacccgctgtccccggtc 321 ||||| |||||||||||||||| | ||||||| Sbjct: 425 ccaccaacggcagcaacccgctctacccggtc 456
>ref|NM_001038220.1| Bos taurus coronin, actin binding protein, 2A (CORO2A), mRNA Length = 4559 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 329 ccgccaccgccacctgcgcggc 350 |||||||||||||||||||||| Sbjct: 57 ccgccaccgccacctgcgcggc 78
>gb|BC109477.1| Bos taurus cDNA clone MGC:128280 IMAGE:7929071, complete cds Length = 4559 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 329 ccgccaccgccacctgcgcggc 350 |||||||||||||||||||||| Sbjct: 57 ccgccaccgccacctgcgcggc 78
>dbj|AK108620.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-C07, full insert sequence Length = 1405 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 485 tcttcggcggcggcccgttcttcctc 510 |||||||||||||||||||| ||||| Sbjct: 547 tcttcggcggcggcccgttcgtcctc 572 Score = 40.1 bits (20), Expect = 7.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 290 ccaccgacggcagcaacccgctgtccccggtc 321 ||||| |||||||||||||||| | ||||||| Sbjct: 346 ccaccaacggcagcaacccgctctacccggtc 377
>ref|XM_473683.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 567 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 92 tgctcctcctgctcgccgcctccac 116 |||||||||| |||||||||||||| Sbjct: 41 tgctcctcctactcgccgcctccac 65
>gb|AY596292.1| Haloarcula marismortui ATCC 43049 plasmid pNG300, complete sequence Length = 39521 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 474 gggcgcggccatcttcggcggcggc 498 ||||| ||||||||||||||||||| Sbjct: 30325 gggcggggccatcttcggcggcggc 30349
>gb|AE009375.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 145 of 187 of the complete sequence Length = 10493 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 cctgctcgccgcctccacggt 119 ||||||||||||||||||||| Sbjct: 3382 cctgctcgccgcctccacggt 3362
>gb|AE008239.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 43 of 187 of the complete sequence Length = 11603 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 99 cctgctcgccgcctccacggt 119 ||||||||||||||||||||| Sbjct: 9110 cctgctcgccgcctccacggt 9130
>gb|AC122397.2| Mus musculus BAC clone RP24-90D21 from chromosome 15, complete sequence Length = 181742 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 ctcctcctgctcgccgcctcc 114 ||||||||||||||||||||| Sbjct: 19571 ctcctcctgctcgccgcctcc 19591
>gb|AC122459.2| Mus musculus BAC clone RP24-273F21 from chromosome 15, complete sequence Length = 156807 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 ctcctcctgctcgccgcctcc 114 ||||||||||||||||||||| Sbjct: 151703 ctcctcctgctcgccgcctcc 151723
>emb|AL606658.5|OSJN00098 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0016D16, complete sequence Length = 133113 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 92 tgctcctcctgctcgccgcctccac 116 |||||||||| |||||||||||||| Sbjct: 14546 tgctcctcctactcgccgcctccac 14570
>emb|AL662957.2|OSJN00157 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0013K16, complete sequence Length = 145739 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 92 tgctcctcctgctcgccgcctccac 116 |||||||||| |||||||||||||| Sbjct: 130015 tgctcctcctactcgccgcctccac 130039
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 92 tgctcctcctgctcgccgcctccac 116 |||||||||| |||||||||||||| Sbjct: 29627326 tgctcctcctactcgccgcctccac 29627350
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 323 cattcgccgccaccgccacct 343 ||||||||||||||||||||| Sbjct: 25042150 cattcgccgccaccgccacct 25042170
>emb|AL713904.3|CNS07YQ4 Oryza sativa chromosome 12, . BAC OJ1306_H03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 121563 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 323 cattcgccgccaccgccacct 343 ||||||||||||||||||||| Sbjct: 89329 cattcgccgccaccgccacct 89309
>gb|AF049880.1|AF049880 Mus musculus TGFb inducible early protein and hypothetical TGFb inducible early protein splice variant genes, complete cds Length = 7228 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 ctcctcctgctcgccgcctcc 114 ||||||||||||||||||||| Sbjct: 1882 ctcctcctgctcgccgcctcc 1862
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 323 cattcgccgccaccgccacct 343 ||||||||||||||||||||| Sbjct: 24970355 cattcgccgccaccgccacct 24970375
>emb|AL928754.2|CNS08CBR Oryza sativa chromosome 12, . BAC OSJNBa0056D07 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 146686 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 323 cattcgccgccaccgccacct 343 ||||||||||||||||||||| Sbjct: 65018 cattcgccgccaccgccacct 64998
>gb|CP000038.1| Shigella sonnei Ss046, complete genome Length = 4825265 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 327 cgccgccaccgccacctgcgc 347 ||||||||||||||||||||| Sbjct: 2975367 cgccgccaccgccacctgcgc 2975347
>ref|XM_550500.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1164 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 92 tgctcctcctgctcgccgcctcca 115 ||||| |||||||||||||||||| Sbjct: 773 tgctcatcctgctcgccgcctcca 796
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 470 gcgtgggcgcggccatcttcggcg 493 |||||||| ||||||||||||||| Sbjct: 2595751 gcgtgggctcggccatcttcggcg 2595774
>gb|AC134886.5| Oryza sativa chromosome 3 BAC OSJNBa0002D18 genomic sequence, complete sequence Length = 145714 Score = 40.1 bits (20), Expect = 7.0 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 327 cgccgccaccgccacctgc-gcggcggc 353 ||||||||||||||||||| |||||||| Sbjct: 108108 cgccgccaccgccacctgctgcggcggc 108135
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 230 cgccgtccatcacgacgccgtgca 253 ||||| |||||||||||||||||| Sbjct: 1298997 cgccgcccatcacgacgccgtgca 1299020 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 ccgcgccgtccatcacgacg 246 |||||||||||||||||||| Sbjct: 912195 ccgcgccgtccatcacgacg 912176
>gb|AC092222.2| Drosophila melanogaster clone BACR16I01, complete sequence Length = 165697 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 gcagaaggtggccaactcgt 445 |||||||||||||||||||| Sbjct: 129590 gcagaaggtggccaactcgt 129609
>ref|XM_876675.1| PREDICTED: Bos taurus similar to ribosomal protein S6 kinase, 52kDa, polypeptide 1, transcript variant 5 (LOC533192), mRNA Length = 4371 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 420 cagcacgcagaaggtggccaactc 443 |||||||||||||||||| ||||| Sbjct: 1177 cagcacgcagaaggtggcaaactc 1200
>ref|XM_612518.2| PREDICTED: Bos taurus similar to ribosomal protein S6 kinase, 52kDa, polypeptide 1, transcript variant 1 (LOC533192), mRNA Length = 4266 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 420 cagcacgcagaaggtggccaactc 443 |||||||||||||||||| ||||| Sbjct: 1072 cagcacgcagaaggtggcaaactc 1095
>ref|XM_865631.1| PREDICTED: Bos taurus similar to ribosomal protein S6 kinase, 52kDa, polypeptide 1, transcript variant 3 (LOC533192), mRNA Length = 4407 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 420 cagcacgcagaaggtggccaactc 443 |||||||||||||||||| ||||| Sbjct: 1213 cagcacgcagaaggtggcaaactc 1236
>ref|XM_876493.1| PREDICTED: Bos taurus similar to ribosomal protein S6 kinase, 52kDa, polypeptide 1, transcript variant 4 (LOC533192), mRNA Length = 2896 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 420 cagcacgcagaaggtggccaactc 443 |||||||||||||||||| ||||| Sbjct: 1072 cagcacgcagaaggtggcaaactc 1095
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 230 cgccgtccatcacgacgccgtgca 253 ||||| |||||||||||||||||| Sbjct: 2159893 cgccgcccatcacgacgccgtgca 2159870 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 ccgcgccgtccatcacgacg 246 |||||||||||||||||||| Sbjct: 1954794 ccgcgccgtccatcacgacg 1954775
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.0 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 327 cgccgccaccgccacctgc-gcggcggc 353 ||||||||||||||||||| |||||||| Sbjct: 16476225 cgccgccaccgccacctgctgcggcggc 16476198
>ref|XM_534992.2| PREDICTED: Canis familiaris similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8, transcript variant 1 (LOC477798), mRNA Length = 664 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 489 cggcggcggcccgttcttcc 508 |||||||||||||||||||| Sbjct: 169 cggcggcggcccgttcttcc 150
>ref|XM_856611.1| PREDICTED: Canis familiaris similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8, transcript variant 3 (LOC477798), mRNA Length = 596 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 489 cggcggcggcccgttcttcc 508 |||||||||||||||||||| Sbjct: 101 cggcggcggcccgttcttcc 82
>ref|XM_856581.1| PREDICTED: Canis familiaris similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8, transcript variant 2 (LOC477798), mRNA Length = 692 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 489 cggcggcggcccgttcttcc 508 |||||||||||||||||||| Sbjct: 197 cggcggcggcccgttcttcc 178
>ref|XM_810226.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053509153.10) partial mRNA Length = 4236 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 gcgctctacacggcgcccct 194 |||||||||||||||||||| Sbjct: 324 gcgctctacacggcgcccct 343
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 ccaccgccacctgcgcggcg 351 |||||||||||||||||||| Sbjct: 4387612 ccaccgccacctgcgcggcg 4387593
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 465 cgacggcgtgggcgcggcca 484 |||||||||||||||||||| Sbjct: 2625247 cgacggcgtgggcgcggcca 2625228
>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16 Length = 349142 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 325 ttcgccgccaccgccacctgcgcg 348 ||||||||||||||||||| |||| Sbjct: 52208 ttcgccgccaccgccaccttcgcg 52231
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 ccgcgccgtccatcacgacg 246 |||||||||||||||||||| Sbjct: 2422042 ccgcgccgtccatcacgacg 2422061 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 230 cgccgtccatcacgacgccgtgca 253 ||||| |||||||||||||||||| Sbjct: 2214798 cgccgcccatcacgacgccgtgca 2214821
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 463 agcgacggcgtgggcgcggc 482 |||||||||||||||||||| Sbjct: 1801911 agcgacggcgtgggcgcggc 1801892
>gb|AY119526.1| Drosophila melanogaster GH16240 full insert cDNA Length = 2418 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 gcagaaggtggccaactcgt 445 |||||||||||||||||||| Sbjct: 413 gcagaaggtggccaactcgt 432
>ref|NM_164392.1| Drosophila melanogaster drongo CG3365-RC, transcript variant C (drongo), mRNA Length = 2423 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 gcagaaggtggccaactcgt 445 |||||||||||||||||||| Sbjct: 433 gcagaaggtggccaactcgt 452
>ref|NM_164391.1| Drosophila melanogaster drongo CG3365-RA, transcript variant A (drongo), mRNA Length = 2418 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 gcagaaggtggccaactcgt 445 |||||||||||||||||||| Sbjct: 433 gcagaaggtggccaactcgt 452
>ref|NM_057891.2| Drosophila melanogaster drongo CG3365-RB, transcript variant B (drongo), mRNA Length = 3503 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 gcagaaggtggccaactcgt 445 |||||||||||||||||||| Sbjct: 1518 gcagaaggtggccaactcgt 1537
>dbj|AK152490.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830076E18 product:coronin, actin binding protein 2A, full insert sequence Length = 3695 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 327 cgccgccaccgccacctgcgcggc 350 ||||||| |||||||||||||||| Sbjct: 69 cgccgccgccgccacctgcgcggc 92
>dbj|AK154247.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630011O17 product:coronin, actin binding protein 2A, full insert sequence Length = 1832 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 327 cgccgccaccgccacctgcgcggc 350 ||||||| |||||||||||||||| Sbjct: 37 cgccgccgccgccacctgcgcggc 60
>dbj|AK153134.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830124C10 product:coronin, actin binding protein 2A, full insert sequence Length = 3695 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 327 cgccgccaccgccacctgcgcggc 350 ||||||| |||||||||||||||| Sbjct: 69 cgccgccgccgccacctgcgcggc 92
>dbj|AK170184.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630025I05 product:coronin, actin binding protein 2A, full insert sequence Length = 3635 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 327 cgccgccaccgccacctgcgcggc 350 ||||||| |||||||||||||||| Sbjct: 38 cgccgccgccgccacctgcgcggc 61
>dbj|AK045728.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230308E04 product:Mus musculus endogenous mouse mammary tumor virus like fragment, full insert sequence Length = 4631 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 327 cgccgccaccgccacctgcgcggc 350 ||||||| |||||||||||||||| Sbjct: 21 cgccgccgccgccacctgcgcggc 44
>dbj|AK030971.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5830472M12 product:CORONIN, ACTIN-BINDING PROTEIN, 2A (UNKNOWN) (PROTEIN FOR MGC:19551) homolog [Homo sapiens], full insert sequence Length = 3640 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 327 cgccgccaccgccacctgcgcggc 350 ||||||| |||||||||||||||| Sbjct: 36 cgccgccgccgccacctgcgcggc 59
>dbj|AK044060.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830085G19 product:CORONIN, ACTIN-BINDING PROTEIN, 2A (UNKNOWN) (PROTEIN FOR MGC:19551) [Homo sapiens], full insert sequence Length = 1389 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 327 cgccgccaccgccacctgcgcggc 350 ||||||| |||||||||||||||| Sbjct: 42 cgccgccgccgccacctgcgcggc 65
>gb|AF226283.1|AF226283 Xanthomonas oryzae pv. oryzae hypothetical twitching motility protein PilL (pilL) gene, complete cds Length = 2976 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 463 agcgacggcgtgggcgcggc 482 |||||||||||||||||||| Sbjct: 1391 agcgacggcgtgggcgcggc 1372
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 92 tgctcctcctgctcgccgcctcca 115 ||||| |||||||||||||||||| Sbjct: 825329 tgctcatcctgctcgccgcctcca 825352
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.0 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 327 cgccgccaccgccacctgc-gcggcggc 353 ||||||||||||||||||| |||||||| Sbjct: 16469858 cgccgccaccgccacctgctgcggcggc 16469831
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 acggcgcccctcagcgccgg 203 |||||||||||||||||||| Sbjct: 1894874 acggcgcccctcagcgccgg 1894855
>ref|XM_575819.1| PREDICTED: Rattus norvegicus coronin, actin binding protein 2A (predicted) (Coro2a_predicted), mRNA Length = 3576 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 327 cgccgccaccgccacctgcgcggc 350 ||||||| |||||||||||||||| Sbjct: 80 cgccgccgccgccacctgcgcggc 103
>dbj|AP001389.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0541H01 Length = 157519 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 92 tgctcctcctgctcgccgcctcca 115 ||||| |||||||||||||||||| Sbjct: 108463 tgctcatcctgctcgccgcctcca 108486
>dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0019F11 Length = 123673 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 92 tgctcctcctgctcgccgcctcca 115 ||||| |||||||||||||||||| Sbjct: 6224 tgctcatcctgctcgccgcctcca 6247
>ref|XM_317614.2| Anopheles gambiae str. PEST ENSANGP00000010000 (ENSANGG00000007511), partial mRNA Length = 933 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 tgctcctcctgctcgccgcc 111 |||||||||||||||||||| Sbjct: 437 tgctcctcctgctcgccgcc 418
>ref|XM_308333.2| Anopheles gambiae str. PEST ENSANGP00000009390 (ENSANGG00000007026), partial mRNA Length = 3987 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 caccaaggtaaccaagggcg 163 |||||||||||||||||||| Sbjct: 297 caccaaggtaaccaagggcg 316
>gb|AE003588.3| Drosophila melanogaster chromosome 2L, section 3 of 83 of the complete sequence Length = 308447 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 gcagaaggtggccaactcgt 445 |||||||||||||||||||| Sbjct: 225168 gcagaaggtggccaactcgt 225149
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 463 agcgacggcgtgggcgcggc 482 |||||||||||||||||||| Sbjct: 1822996 agcgacggcgtgggcgcggc 1822977
>emb|AL683884.26| Mouse DNA sequence from clone RP23-117B19 on chromosome 4, complete sequence Length = 227816 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 327 cgccgccaccgccacctgcgcggc 350 ||||||| |||||||||||||||| Sbjct: 213044 cgccgccgccgccacctgcgcggc 213021
>gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome Length = 2178400 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 aactccaccgacggcagcaa 305 |||||||||||||||||||| Sbjct: 1329087 aactccaccgacggcagcaa 1329068
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 ccgcgccgtccatcacgacg 246 |||||||||||||||||||| Sbjct: 3057858 ccgcgccgtccatcacgacg 3057877
>gb|AF097364.1|AF097364 Drosophila melanogaster Drongo (drongo) mRNA, complete cds Length = 3494 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 gcagaaggtggccaactcgt 445 |||||||||||||||||||| Sbjct: 1483 gcagaaggtggccaactcgt 1502
>gb|AC004546.1|AC004546 Drosophila melanogaster DNA sequence (P1s DS02684 (D134) and DS00269 (D131)), complete sequence Length = 102389 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 gcagaaggtggccaactcgt 445 |||||||||||||||||||| Sbjct: 80651 gcagaaggtggccaactcgt 80670 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,104,158 Number of Sequences: 3902068 Number of extensions: 3104158 Number of successful extensions: 79732 Number of sequences better than 10.0: 89 Number of HSP's better than 10.0 without gapping: 86 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 77732 Number of HSP's gapped (non-prelim): 2003 length of query: 516 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 493 effective length of database: 17,143,297,704 effective search space: 8451645768072 effective search space used: 8451645768072 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
