Clone Information

BLAST Search Result

Clone Name	bart26d10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7...	32	0.095
2	VID21_NEUCR (Q7SBU6) Chromatin modification-related protein vid-21	33	0.68
3	CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor	33	0.68
4	CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor	33	0.68
5	CAC1B_HUMAN (Q00975) Voltage-dependent N-type calcium channel al...	28	0.70
6	CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor	32	0.89
7	CJ047_HUMAN (Q86WR7) Protein C10orf47	32	1.2
8	PRTP_TUHV2 (Q9WRL6) Probable processing and transport protein	32	1.2
9	HCN2_MOUSE (O88703) Potassium/sodium hyperpolarization-activated...	32	1.5
10	CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor	32	1.5
11	MYBP_MAIZE (P27898) Myb-related protein P	32	1.5
12	CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor	32	1.5
13	COBA1_HUMAN (P12107) Collagen alpha-1(XI) chain precursor	32	1.5
14	RPOA_EAVBU (P19811) Replicase polyprotein 1ab (ORF1ab polyprotei...	32	1.5
15	HCN2_RAT (Q9JKA9) Potassium/sodium hyperpolarization-activated c...	31	2.0
16	COHA1_MESAU (Q9JMH4) Collagen alpha-1(XVII) chain (Bullous pemph...	31	2.0
17	CO1A2_BOVIN (P02465) Collagen alpha-2(I) chain precursor	31	2.6
18	CLIC6_HUMAN (Q96NY7) Chloride intracellular channel 6	31	2.6
19	CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment)	30	3.4
20	XP2_XENLA (P17437) Skin secretory protein xP2 precursor (APEG pr...	30	3.4
21	CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain	30	3.4
22	SORC3_HUMAN (Q9UPU3) VPS10 domain-containing receptor SorCS3 pre...	30	3.4
23	VE4_HPV05 (P06924) Probable protein E4	30	4.4
24	LSM11_MOUSE (Q8BUV6) U7 snRNA-associated Sm-like protein LSm11	30	4.4
25	CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor	29	5.3
26	CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Frag...	30	5.8
27	SFTPD_BOVIN (P35246) Pulmonary surfactant-associated protein D p...	30	5.8
28	CDYL2_HUMAN (Q8N8U2) Chromodomain Y-like protein 2 (CDY-like 2)	30	5.8
29	COHA1_MOUSE (Q07563) Collagen alpha-1(XVII) chain (Bullous pemph...	30	5.8
30	5E5_RAT (Q63003) 5E5 antigen	30	5.8
31	RK4_SPIOL (O49937) 50S ribosomal protein L4, chloroplast precurs...	30	5.8
32	FTSK1_RALSO (Q8XRH0) DNA translocase ftsK 1	29	7.6
33	ICP0_BHV1K (P29836) Trans-acting transcriptional protein ICP0 (P...	29	7.6
34	COLE_LEPMA (P98085) Inner ear-specific collagen precursor (Saccu...	29	7.6
35	MYST4_MACFA (Q8WML3) Histone acetyltransferase MYST4 (EC 2.3.1.4...	29	7.6
36	TRMD_AGRT5 (Q8UBZ7) tRNA (guanine-N(1)-)-methyltransferase (EC 2...	29	7.6
37	RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1	29	7.6
38	CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor	29	7.6
39	CO1A2_ONCMY (O93484) Collagen alpha-2(I) chain precursor	29	7.6
40	COGA1_HUMAN (Q07092) Collagen alpha-1(XVI) chain precursor	29	7.6
41	MYST4_HUMAN (Q8WYB5) Histone acetyltransferase MYST4 (EC 2.3.1.4...	29	7.6
42	FOG1_MOUSE (O35615) Zinc finger protein ZFPM1 (Zinc finger prote...	26	8.9
43	YLS6_CAEEL (P34391) Putative cuticle collagen F09G8.6	29	9.9
44	COIA1_MOUSE (P39061) Collagen alpha-1(XVIII) chain precursor [Co...	29	9.9
45	CAC1G_HUMAN (O43497) Voltage-dependent T-type calcium channel al...	29	9.9
46	GBX2_XENLA (Q91907) Homeobox protein GBX-2 (Gastrulation and bra...	29	9.9
47	CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor	29	9.9
48	C1QT7_MOUSE (Q8BVD7) Complement C1q tumor necrosis factor-relate...	29	9.9
49	RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1	29	9.9
50	RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1	29	9.9
51	RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1	29	9.9
52	RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1	29	9.9
53	RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain...	29	9.9
54	TSSC4_MOUSE (Q9JHE7) Protein TSSC4	29	9.9
55	MAP1A_RAT (P34926) Microtubule-associated protein 1A (MAP 1A) [C...	29	9.9
56	CO9A2_MOUSE (Q07643) Collagen alpha-2(IX) chain precursor	29	9.9

>WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7.11.1)|
           (Protein kinase with no lysine 2) (Protein kinase,
           lysine-deficient 2)
          Length = 2297

 Score = 32.3 bits (72), Expect(2) = 0.095
 Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
 Frame = -1

Query: 363 GRDAPQLGL-EPRGQAAAPGQQRRVGRLA-----GGPDALDGHRVVGPDVQRDLHVRVLL 202
           GR A   G+ EPR +AA PG QR + R         P  L+     GP   + L  RVLL
Sbjct: 18  GRGAGPAGMAEPRAKAARPGPQRFLRRSVVESDQEEPPGLEAAEAPGPQPPQPLQRRVLL 77

Query: 201 L 199
           L
Sbjct: 78  L 78



 Score = 21.9 bits (45), Expect(2) = 0.095
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 118 RSRPASPCPSAAVVK 74
           R RPA+P P+A V +
Sbjct: 90  RGRPAAPAPAALVAQ 104

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>VID21_NEUCR (Q7SBU6) Chromatin modification-related protein vid-21|
          Length = 2189

 Score = 32.7 bits (73), Expect = 0.68
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
 Frame = +3

Query: 309  PERRPVLEAQG------RAEAHRVREAGEPAPAGQEHDRRRARAQGPPVPQPERGHAGQL 470
            P+ +P ++AQ       +A+     +A     A Q H + +++ QG P  Q +R H  Q 
Sbjct: 1634 PQAQPHVQAQAMAAAQLQAQVQLQAQAAAQKQAAQAHPQAQSQGQGQPPQQTQRAHQVQQ 1693

Query: 471  ARGGEA 488
             +G +A
Sbjct: 1694 VQGQQA 1699

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>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 32.7 bits (73), Expect = 0.68
 Identities = 17/39 (43%), Positives = 18/39 (46%)
 Frame = +3

Query: 372 GEPAPAGQEHDRRRARAQGPPVPQPERGHAGQLARGGEA 488
           G P PAG   DR  A A GP  P   RG  G+    G A
Sbjct: 688 GAPGPAGASGDRGEAGAAGPSGPAGPRGSPGERGEVGPA 726



 Score = 31.2 bits (69), Expect = 2.0
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
 Frame = +3

Query: 372 GEPAPAGQEHDRRR------ARAQGPPVPQPERGHAGQLARGGEA 488
           GEP PAG + +         A AQGPP P  E G  G     G A
Sbjct: 352 GEPGPAGSKGETGNKGEPGSAGAQGPPGPSGEEGKRGSPGEPGSA 396



 Score = 29.6 bits (65), Expect = 5.8
 Identities = 16/39 (41%), Positives = 17/39 (43%)
 Frame = +3

Query: 369 AGEPAPAGQEHDRRRARAQGPPVPQPERGHAGQLARGGE 485
           AGEP   GQ          GPP    E GH G+  R GE
Sbjct: 123 AGEPGEPGQTGPAGSRGPAGPPGKAGEDGHPGKPGRPGE 161

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>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 32.7 bits (73), Expect = 0.68
 Identities = 17/39 (43%), Positives = 18/39 (46%)
 Frame = +3

Query: 372 GEPAPAGQEHDRRRARAQGPPVPQPERGHAGQLARGGEA 488
           G P PAG   DR  A A GP  P   RG  G+    G A
Sbjct: 688 GAPGPAGASGDRGEAGAAGPSGPAGPRGSPGERGEVGPA 726



 Score = 30.4 bits (67), Expect = 3.4
 Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
 Frame = +3

Query: 372 GEPAPAGQEHDRRR------ARAQGPPVPQPERGHAGQLARGGEA 488
           GEP PAG + +           AQGPP P  E G  G     G A
Sbjct: 352 GEPGPAGSKGESGNKGEPGSVGAQGPPGPSGEEGKRGSPGEAGSA 396

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>CAC1B_HUMAN (Q00975) Voltage-dependent N-type calcium channel alpha-1B subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.2)
            (Calcium channel, L type, alpha-1 polypeptide isoform 5)
            (Brain calcium channel III) (BIII)
          Length = 2339

 Score = 28.5 bits (62), Expect(2) = 0.70
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +3

Query: 312  ERRPVLEAQGRAEAHRVREAGEPAPAGQE---HDRRRARAQGPPVPQPERG 455
            ++ P    Q RAEA +  E+GEP    +    H      A GPP  + ERG
Sbjct: 858  DKTPAAGDQDRAEAPKA-ESGEPGAREERPRPHRSHSKEAAGPPEARSERG 907



 Score = 22.7 bits (47), Expect(2) = 0.70
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +1

Query: 79  RPRLTGMERQAGNGNAIAGPPPEENKGPDGKSASRRSTRFKEEN 210
           RP +  + R    G       PE  + P+G    RR  R ++++
Sbjct: 815 RPLVVELGRDGARGPVGGKARPEAAEAPEGVDPPRRHHRHRDKD 858

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>CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor|
          Length = 1366

 Score = 32.3 bits (72), Expect = 0.89
 Identities = 17/39 (43%), Positives = 18/39 (46%)
 Frame = +3

Query: 372 GEPAPAGQEHDRRRARAQGPPVPQPERGHAGQLARGGEA 488
           G P PAG   DR  A A GP  P   RG  G+    G A
Sbjct: 682 GAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPA 720



 Score = 29.6 bits (65), Expect = 5.8
 Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
 Frame = +3

Query: 372 GEPAPAGQEHDRRR------ARAQGPPVPQPERGHAGQLARGGEA 488
           GEP PAG + +         A  QGPP P  E G  G     G A
Sbjct: 346 GEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSA 390



 Score = 29.6 bits (65), Expect = 5.8
 Identities = 16/39 (41%), Positives = 17/39 (43%)
 Frame = +3

Query: 369 AGEPAPAGQEHDRRRARAQGPPVPQPERGHAGQLARGGE 485
           AGEP   GQ          GPP    E GH G+  R GE
Sbjct: 117 AGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGE 155

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>CJ047_HUMAN (Q86WR7) Protein C10orf47|
          Length = 435

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 18/39 (46%), Positives = 23/39 (58%)
 Frame = +3

Query: 330 EAQGRAEAHRVREAGEPAPAGQEHDRRRARAQGPPVPQP 446
           EA+G  E     +A  PAPAG+EH  R+  A+ PP P P
Sbjct: 119 EAEGLPEG---TQAAGPAPAGKEH--RKQDAETPPPPDP 152



 Score = 30.0 bits (66), Expect = 4.4
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = +3

Query: 366 EAGEPAPAGQEHDRRRARAQGPPVPQPERGHAGQLARG 479
           +AGE AP G     R AR +G P P       GQ  RG
Sbjct: 301 DAGEGAPGGGSSPERVARGRGLPGPAESLRAGGQAPRG 338

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>PRTP_TUHV2 (Q9WRL6) Probable processing and transport protein|
          Length = 782

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 29/80 (36%), Positives = 34/80 (42%)
 Frame = -1

Query: 450 ALVEELEAPERARGAGHAPVQPALAHRLRGRDAPQLGLEPRGQAAAPGQQRRVGRLAGGP 271
           +L+EE+  P    GAG      A A   RG  A   G    G AAA G     G  AGGP
Sbjct: 402 SLLEEIRRP--LDGAGTRGAAAATAAGARGA-AEGTG----GAAAAGGAAAAAGEAAGGP 454

Query: 270 DALDGHRVVGPDVQRDLHVR 211
                      DV R++HVR
Sbjct: 455 FQCGDPAARAHDVVREVHVR 474

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>HCN2_MOUSE (O88703) Potassium/sodium hyperpolarization-activated cyclic|
            nucleotide-gated channel 2 (Brain cyclic nucleotide gated
            channel 2) (BCNG-2) (Hyperpolarization-activated cation
            channel 1) (HAC-1)
          Length = 863

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
 Frame = -1

Query: 489  PLLHLGPA--ALRDHALVEELEAPERARGAGHAPVQPALAHRLRGRDAPQLGLEPRGQAA 316
            P   +GPA  A R       L A + +   G     PA + R      P+LG  P  + A
Sbjct: 772  PATRVGPALPARRLSRASRPLSASQPSLPHGVPAPSPAASARPASSSTPRLGPAPTARTA 831

Query: 315  APGQQRRVGRLAGGPDALD 259
            AP   RR     G    LD
Sbjct: 832  APSPDRRDSASPGAASGLD 850

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>CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor|
          Length = 1366

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
 Frame = +3

Query: 372 GEPAPAGQEHDRRR------ARAQGPPVPQPERGHAGQLARGGEA 488
           GEP PAG + +         A AQGPP P  E G  G     G A
Sbjct: 346 GEPGPAGSKGESGNKGEPGSAGAQGPPGPSGEEGKRGPNGEAGSA 390



 Score = 30.0 bits (66), Expect = 4.4
 Identities = 16/39 (41%), Positives = 17/39 (43%)
 Frame = +3

Query: 372 GEPAPAGQEHDRRRARAQGPPVPQPERGHAGQLARGGEA 488
           G P PAG   DR  A   GP  P   RG  G+    G A
Sbjct: 682 GAPGPAGATGDRGEAGPAGPAGPAGPRGTPGERGEVGPA 720



 Score = 29.6 bits (65), Expect = 5.8
 Identities = 16/39 (41%), Positives = 17/39 (43%)
 Frame = +3

Query: 369 AGEPAPAGQEHDRRRARAQGPPVPQPERGHAGQLARGGE 485
           AGEP   GQ          GPP    E GH G+  R GE
Sbjct: 117 AGEPGEPGQTGPAGARGPPGPPGKAGEDGHPGKPGRPGE 155

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>MYBP_MAIZE (P27898) Myb-related protein P|
          Length = 399

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -1

Query: 444 VEELEAPERARGAGHAPVQP--ALAHRLRGRDAPQLGLEPRGQAAAPGQQRRVGRLAGGP 271
           + +L++ +R RG G  P +P  A A R +  DA Q G E +G AAA    R    +  GP
Sbjct: 136 MSKLQSADRRRG-GRTPGRPPKASASRTKQADADQPGGEAKGPAAAASSPRHSDVVNPGP 194

Query: 270 D 268
           +
Sbjct: 195 N 195

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>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = +3

Query: 372 GEPAPAGQEHDRRRARAQGPPVPQPERGHAGQLARGG 482
           G P PAG   D+  A   GPP P   RG  G     G
Sbjct: 759 GPPGPAGAPGDKGEAGPSGPPGPTGARGAPGDRGEAG 795



 Score = 28.9 bits (63), Expect = 9.9
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 366  EAGEPAPAGQEHDRRRARAQGPPVPQPERGHAGQLARGGE 485
            + GE  PAG       A A+GP  PQ  RG  G+    G+
Sbjct: 1054 DRGETGPAGPAGPIGPAGARGPAGPQGPRGDKGETGEQGD 1093

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>COBA1_HUMAN (P12107) Collagen alpha-1(XI) chain precursor|
          Length = 1806

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = -1

Query: 477 LGPAALRDHALVEELEAPERARGAGHAPVQPALAHRLRGRDAPQLGLEPRGQAAAPGQQR 298
           +GP  L   A    L  P   RG   AP QP +A  + G   P+  + P+G+   PGQQ 
Sbjct: 639 IGPRGLPGEAGPRGLLGP---RGTPGAPGQPGMAG-VDGPPGPKGNMGPQGEPGPPGQQG 694

Query: 297 RVGRLAGGPDALDGHR-VVGP 238
                  GP  L G +  +GP
Sbjct: 695 N-----PGPQGLPGPQGPIGP 710

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>RPOA_EAVBU (P19811) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:|
            Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1
            papain-like cysteine proteinase (EC 3.4.22.-) (PCP); Nsp2
            cysteine proteinase (EC 3.4.22.-) (CP2) (CP);
            Nonstructural protein
          Length = 3175

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 20/49 (40%), Positives = 24/49 (48%)
 Frame = -2

Query: 518  SRPLTARRSNRFSTSGQLPCVTTLWLRNWRPLSARAAPVMLLSSRRWLT 372
            S+P +A      S   Q P VT+ WL  W    ARA P  L SS R+ T
Sbjct: 2896 SKPCSAGYMVGQSVFVQTPGVTSYWLTEWVDGKARALPDSLFSSGRFET 2944

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>HCN2_RAT (Q9JKA9) Potassium/sodium hyperpolarization-activated cyclic|
            nucleotide-gated channel 2
          Length = 863

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
 Frame = -1

Query: 489  PLLHLGPA--ALRDHALVEELEAPERARGAGHAPVQPALAHRLRGRDAPQLGLEPRGQAA 316
            P   +GPA  A R       L A + +   G     PA + R      P+LG  P  + A
Sbjct: 772  PATRVGPALPARRLSRASRPLSASQPSLPHGAPAPSPAASARPASSSTPRLGPAPTTRTA 831

Query: 315  APGQQRRVGRLAGGPDALD 259
            AP   RR     G    LD
Sbjct: 832  APSPDRRDSASPGAASGLD 850

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>COHA1_MESAU (Q9JMH4) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen 2)|
            (180 kDa bullous pemphigoid antigen 2)
          Length = 1431

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 18/42 (42%), Positives = 20/42 (47%)
 Frame = +3

Query: 366  EAGEPAPAGQEHDRRRARAQGPPVPQPERGHAGQLARGGEAV 491
            EAG P P G   DR  A  +GPP P   RG  G     G+ V
Sbjct: 1380 EAGTPGPKG---DRGLAGQRGPPGPPGPRGQKGDKGDKGDQV 1418

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>CO1A2_BOVIN (P02465) Collagen alpha-2(I) chain precursor|
          Length = 1364

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 16/39 (41%), Positives = 17/39 (43%)
 Frame = +3

Query: 372 GEPAPAGQEHDRRRARAQGPPVPQPERGHAGQLARGGEA 488
           G P PAG   DR  A   GP  P   RG  G+    G A
Sbjct: 680 GAPGPAGANGDRGEAGPAGPAGPAGPRGSPGERGEVGPA 718

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>CLIC6_HUMAN (Q96NY7) Chloride intracellular channel 6|
          Length = 704

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +3

Query: 309 PERRPVLEAQGRAEAHRVREAGEPAPAGQEHDRRRARAQGPPVPQPERGHAGQLARG--- 479
           P+R P  EA+G   AH   EA E AP G E  +      G    Q E    G+ A+G   
Sbjct: 65  PDRGPEAEARGTRGAHGETEAEEGAPEGAEVPQGGEETSG--AQQVEGASPGRGAQGEPR 122

Query: 480 GEA 488
           GEA
Sbjct: 123 GEA 125

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>CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment)|
          Length = 1027

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 366 EAGEPAPAGQEHDRRRARAQGPPVPQPERGHAGQLARGGE 485
           + G P P+G   +R  A  QGP  P  + G  GQ    G+
Sbjct: 812 DGGPPGPSGDRGERGNAGPQGPTGPSGQAGAPGQEGAPGK 851



 Score = 28.9 bits (63), Expect = 9.9
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
 Frame = -1

Query: 366 RGRDAPQLGLEPRGQAAAPGQQRRVGR-----LAGGP 271
           RG   PQ    P GQA APGQ+   G+     LAG P
Sbjct: 825 RGNAGPQGPTGPSGQAGAPGQEGAPGKDGLPGLAGRP 861

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>XP2_XENLA (P17437) Skin secretory protein xP2 precursor (APEG protein)|
          Length = 439

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 17/43 (39%), Positives = 18/43 (41%)
 Frame = +3

Query: 333 AQGRAEAHRVREAGEPAPAGQEHDRRRARAQGPPVPQPERGHA 461
           A+G A A    E G PAPA  E         G P P P  G A
Sbjct: 86  AEGGAPAPAPAEGGAPAPAPAEGGAPAPAEGGAPAPAPAEGEA 128



 Score = 29.3 bits (64), Expect = 7.6
 Identities = 20/50 (40%), Positives = 20/50 (40%)
 Frame = +3

Query: 333 AQGRAEAHRVREAGEPAPAGQEHDRRRARAQGPPVPQPERGHAGQLARGG 482
           A G A A    E G PAPA  E         G P P P  G A   A GG
Sbjct: 76  ADGGAPAPAPAEGGAPAPAPAE--------GGAPAPAPAEGGAPAPAEGG 117

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>CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain|
          Length = 1049

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 366  EAGEPAPAGQEHDRRRARAQGPPVPQPERGHAGQLARGG 482
            + GE  PAG       A ++GPP PQ  RG  G+    G
Sbjct: 907  DRGETGPAGPSGAPGPAGSRGPPGPQGPRGDKGETGERG 945

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>SORC3_HUMAN (Q9UPU3) VPS10 domain-containing receptor SorCS3 precursor|
          Length = 1222

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 22/45 (48%), Positives = 25/45 (55%)
 Frame = +3

Query: 327 LEAQGRAEAHRVREAGEPAPAGQEHDRRRARAQGPPVPQPERGHA 461
           +EA G + A   R  G PAPA     RR  RAQ PP+ Q ERG A
Sbjct: 103 VEAGGTSPAGERRGRGIPAPAKLGGARRSRRAQ-PPITQ-ERGDA 145

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>VE4_HPV05 (P06924) Probable protein E4|
          Length = 245

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = +3

Query: 309 PERRPVLEAQGRAEAHRVREAGEPAPAGQEHDRRRARAQG---PPVPQPERGHAG 464
           P R P L   G  +A R  E G   PA  E +      QG   PP P P  GH+G
Sbjct: 110 PRRSPRL---GPLQADRDPEEGPQPPAEGEVEGHPGGDQGHPPPPPPAPHNGHSG 161

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>LSM11_MOUSE (Q8BUV6) U7 snRNA-associated Sm-like protein LSm11|
          Length = 361

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
 Frame = +3

Query: 339 GRAEAHRVREAGEPAPAGQEH-------DRRRARAQGPPVPQPER 452
           GR    R R  GEPA AG             RAR +  P P PER
Sbjct: 66  GRTGRGRARGTGEPASAGTSTGTSTGAGSSSRARRRAAPTPDPER 110

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>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor|
          Length = 1464

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 366  EAGEPAPAGQEHDRRRARAQGPPVPQPERGHAGQLARGGE 485
            + GE  PAG       A A+GP  PQ  RG  G+    G+
Sbjct: 1065 DRGETGPAGPAGPVGPAGARGPAGPQGPRGDKGETGEQGD 1104



 Score = 26.6 bits (57), Expect(2) = 5.3
 Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
 Frame = +3

Query: 342 RAEAHRVREAGEPAPAGQEHDRRRARAQGP---PVPQPERGHAG 464
           + E   V   G P PAG+E  R      GP   P P  ERG  G
Sbjct: 448 KGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPG 491



 Score = 21.6 bits (44), Expect(2) = 5.3
 Identities = 15/51 (29%), Positives = 18/51 (35%)
 Frame = +1

Query: 73  ASRPRLTGMERQAGNGNAIAGPPPEENKGPDGKSASRRSTRFKEENAYVEV 225
           A  P   G    +G       P P+ N G  G   S+  T  K E   V V
Sbjct: 406 AGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGV 456

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>CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Fragments)|
          Length = 1262

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 16/47 (34%), Positives = 18/47 (38%)
 Frame = +3

Query: 342 RAEAHRVREAGEPAPAGQEHDRRRARAQGPPVPQPERGHAGQLARGG 482
           R E   V   G P PAG   D+      G P P   RG  G+    G
Sbjct: 757 RGERGNVGPIGPPGPAGPPGDKGETGPAGAPGPAGSRGGPGERGEQG 803



 Score = 29.3 bits (64), Expect = 7.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 372 GEPAPAGQEHDRRRARAQGPPVPQPERGHAGQLARGG 482
           G+P P G+  +     A+GPP  + +RG  G+  + G
Sbjct: 440 GDPGPKGERGENGTPGARGPPGEEGKRGANGEPGQNG 476

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>SFTPD_BOVIN (P35246) Pulmonary surfactant-associated protein D precursor (SP-D)|
           (PSP-D)
          Length = 369

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 369 AGEPAPAGQEHDRRRARAQGPPVPQPERGHAGQLARGGEA 488
           AG P PAG    +  + A+GPP  + +RG  G+    GE+
Sbjct: 174 AGAPGPAGAIGPQGPSGARGPPGLKGDRGTPGERGAKGES 213

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>CDYL2_HUMAN (Q8N8U2) Chromodomain Y-like protein 2 (CDY-like 2)|
          Length = 506

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = +3

Query: 351 AHRVREAGEPAPAGQEHDRRRARAQGPPVPQPERGHAGQLARGGE 485
           +HR  + G+    G  H R+R     PP+ +P++G++G+ + GG+
Sbjct: 90  SHRPSDPGKSK--GTSHKRKRIN---PPLAKPKKGYSGKPSSGGD 129

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>COHA1_MOUSE (Q07563) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen 2)|
            (180 kDa bullous pemphigoid antigen 2)
          Length = 1470

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 366  EAGEPAPAGQEHDRRRARAQGPPVPQPERGHAGQLARGGEAV 491
            + G P P G   DR  A  +GPP P   RG+ G+    G+ V
Sbjct: 1419 DVGTPGPKG---DRGPAGPRGPPGPPGPRGNKGEKGDKGDQV 1457

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>5E5_RAT (Q63003) 5E5 antigen|
          Length = 825

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 18/38 (47%), Positives = 19/38 (50%)
 Frame = +3

Query: 366 EAGEPAPAGQEHDRRRARAQGPPVPQPERGHAGQLARG 479
           EAG  AP GQ     R RA+GP   Q  R H  Q  RG
Sbjct: 469 EAGASAPEGQAGGGPRGRARGPR-QQARRRHGPQRRRG 505

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>RK4_SPIOL (O49937) 50S ribosomal protein L4, chloroplast precursor (R-protein|
           L4)
          Length = 293

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
 Frame = -1

Query: 489 PLLHLGPAALRDHALVEELEAPERARGAGHAPVQPALAHRLRGRDAPQLGLEPRGQAAAP 310
           P+L+     + +  L  +   PE+AR   H  +   L ++ RG  +     E RG    P
Sbjct: 56  PILNFSGEKVGETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKP 115

Query: 309 GQQRRVGRL----AGGPDALDGHRVVGP 238
             Q++ GR      G P    G  + GP
Sbjct: 116 YPQKKTGRARRGSQGSPLRPGGGVIFGP 143

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>FTSK1_RALSO (Q8XRH0) DNA translocase ftsK 1|
          Length = 959

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = +3

Query: 312 ERRPVLEAQGRAEAHRVREAGEPAP---AGQEHDRRRARAQGPPVPQPE 449
           E  P  EA+  AEA    EA  PAP   A    +   A A   P+P PE
Sbjct: 360 EAEPEAEAEAEAEAEAEPEAEAPAPESVAPALQEAEAATAAEAPLPAPE 408

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>ICP0_BHV1K (P29836) Trans-acting transcriptional protein ICP0 (P135 protein)|
           (IER 2.9/ER2.6)
          Length = 676

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 23/55 (41%), Positives = 24/55 (43%)
 Frame = +3

Query: 315 RRPVLEAQGRAEAHRVREAGEPAPAGQEHDRRRARAQGPPVPQPERGHAGQLARG 479
           R P     GRA A   R AG PA AG      RA A     P  ER  A  +ARG
Sbjct: 560 RAPTPSPAGRAPAADPRRAGAPALAG----AARAEAGRNGNPGRERRPASAMARG 610

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>COLE_LEPMA (P98085) Inner ear-specific collagen precursor (Saccular collagen)|
          Length = 419

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +3

Query: 366 EAGEPAPAGQEHDRRRARAQGPPVPQPERGHAG 464
           E GEP P G + D     A+GPP P   RG AG
Sbjct: 222 ERGEPGPLGGKGD---TGARGPPGPPGGRGMAG 251

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>MYST4_MACFA (Q8WML3) Histone acetyltransferase MYST4 (EC 2.3.1.48) (EC 2.3.1.-)|
            (MYST protein 4) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein
            4)
          Length = 1784

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +1

Query: 136  PPPEENKGPDGKSASRRSTRFKEENAYVEVTLDVRADDAVAVQSV-RAAGETPDT 297
            PP E+ +  D K++    T FKE N     T+++ ++   AVQS+ + + E  DT
Sbjct: 1218 PPGEQAQKQDQKNSKEVDTEFKEGN---PATMEIDSETVQAVQSLTQESSEQDDT 1269

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>TRMD_AGRT5 (Q8UBZ7) tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.31)|
           (M1G-methyltransferase) (tRNA [GM37] methyltransferase)
          Length = 232

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
 Frame = -1

Query: 477 LGPAALRDHALVEELEAPERARGAGHAPV------QPALAHRLRGRDAPQLGLEPRGQAA 316
           L P  +R+ A        +   G G   V        A+ H  +G   P+L + PRG+  
Sbjct: 35  LDPIQIREFATDRHRSVDDTPAGGGAGMVLKPDVLAAAIDHVSKGDTRPRLLMSPRGK-- 92

Query: 315 APGQQRRVGRLAGGPDAL 262
            P  Q RV  LA G  A+
Sbjct: 93  -PLSQNRVRELAAGDGAI 109

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>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1|
          Length = 283

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 23/131 (17%), Positives = 40/131 (30%), Gaps = 20/131 (15%)
 Frame = +3

Query: 144 GREQGPGRQE------REPAKHAVQGGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 305
           G+E+ PG++       R+ AK    G                                  
Sbjct: 20  GKEKAPGKEVTEKDRGRDKAKKRRSGSSGSSSSSHSRSSSSSSSSSGSSSGSSSGSSSSA 79

Query: 306 XPERRPVLEAQGRAEAHRVREAGEPAPAGQEHDRRR--------------ARAQGPPVPQ 443
                    ++  + +     +G P+P+ + HD RR               R +  P P+
Sbjct: 80  SSRSGSSSSSRSSSSSS---SSGSPSPSRRRHDNRRRSRSKSKQPKRDEKERKRRSPSPR 136

Query: 444 PERGHAGQLAR 476
           P + H G+L R
Sbjct: 137 PTKVHIGRLTR 147

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>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 366  EAGEPAPAGQEHDRRRARAQGPPVPQPERGHAGQLARGGE 485
            + GE  PAG       A A+GP  PQ  RG  G+    G+
Sbjct: 1054 DRGETGPAGPAGPPGPAGARGPAGPQGPRGDKGETGEQGD 1093



 Score = 28.9 bits (63), Expect = 9.9
 Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
 Frame = +3

Query: 369 AGEPAPAGQEHDR---RRARAQGPPVPQPERGHAGQLARGG 482
           AG P PAG   +R        QGPP PQ  RG  G     G
Sbjct: 656 AGAPGPAGARGERGFPGERGVQGPPGPQGPRGANGAPGNDG 696

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>CO1A2_ONCMY (O93484) Collagen alpha-2(I) chain precursor|
          Length = 1356

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 369 AGEPAPAGQEHDRRRARAQGPPVPQPERGHAGQLARGGEA 488
           +G P P+G   ++  + + GP  P   RG +G+   GG A
Sbjct: 675 SGPPGPSGANGEKGESGSFGPAGPAGLRGPSGERGEGGPA 714

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>COGA1_HUMAN (Q07092) Collagen alpha-1(XVI) chain precursor|
          Length = 1603

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 366  EAGEPAPAGQEHDRRRARAQGPPVPQPERGHAGQLARGGE 485
            E G    AG+E    +    GPP P+ + G AGQ  + GE
Sbjct: 1341 EPGTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAGE 1380

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>MYST4_HUMAN (Q8WYB5) Histone acetyltransferase MYST4 (EC 2.3.1.48) (EC 2.3.1.-)|
            (MYST protein 4) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein
            4) (Histone acetyltransferase MOZ2) (Monocytic leukemia
            zinc finger protein-related factor) (Histone
            acetyltransferas
          Length = 2073

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +1

Query: 136  PPPEENKGPDGKSASRRSTRFKEENAYVEVTLDVRADDAVAVQSV-RAAGETPDT 297
            PP E+ +  D K++    T FKE N     T+++ ++   AVQS+ + + E  DT
Sbjct: 1507 PPGEQAQKQDQKNSKEVDTEFKEGN---PATMEIDSETVQAVQSLTQESSEQDDT 1558

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>FOG1_MOUSE (O35615) Zinc finger protein ZFPM1 (Zinc finger protein multitype 1)|
            (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1)
          Length = 995

 Score = 26.2 bits (56), Expect(2) = 8.9
 Identities = 17/51 (33%), Positives = 20/51 (39%)
 Frame = +3

Query: 312  ERRPVLEAQGRAEAHRVREAGEPAPAGQEHDRRRARAQGPPVPQPERGHAG 464
            ER P     GRA       A E  P+       R  ++GPP P P  G  G
Sbjct: 911  ERAPRDSPDGRAP-RSPSPAPENTPSDPADQGARTPSKGPPAPAPAPGGGG 960



 Score = 21.2 bits (43), Expect(2) = 8.9
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 117 RQCHCRATAGREQGPGRQEREPAKHA 194
           RQ H    A     PG + R PA+ A
Sbjct: 888 RQAHGLQVAKPAASPGAEPRTPAERA 913

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>YLS6_CAEEL (P34391) Putative cuticle collagen F09G8.6|
          Length = 278

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +3

Query: 372 GEPAPAGQEHDRRRARAQGPPVPQPERGHAGQ 467
           G P PAG      +  A G P P  E+GH GQ
Sbjct: 229 GAPGPAGAPGVDGQPGANGQPGPDGEQGHDGQ 260

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>COIA1_MOUSE (P39061) Collagen alpha-1(XVIII) chain precursor [Contains:|
            Endostatin]
          Length = 1774

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 369  AGEPAPAGQEHDRRRARAQGPPVPQPERGHAGQL 470
            AG P PAG + D      QG P P+ E+G  G +
Sbjct: 1171 AGFPGPAGPKGDLGSKGEQGLPGPKGEKGEPGTI 1204

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>CAC1G_HUMAN (O43497) Voltage-dependent T-type calcium channel alpha-1G subunit|
            (Voltage-gated calcium channel alpha subunit Cav3.1)
            (Cav3.1c) (NBR13)
          Length = 2377

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
 Frame = -1

Query: 477  LGPAALR-------DHALVEELEAPERARGAGHAPVQPALAHRLRGRDAPQLGLEPRGQA 319
            LGPA+ R       +     E+++P  AR + H+P   A +   R      LG  P  + 
Sbjct: 1062 LGPASRRTSSSGSAEPGAAHEMKSPPSARSSPHSPWSAASSWTSRRSSRNSLGRAPSLKR 1121

Query: 318  AAPGQQRR 295
             +P  +RR
Sbjct: 1122 RSPSGERR 1129

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>GBX2_XENLA (Q91907) Homeobox protein GBX-2 (Gastrulation and brain-specific|
           homeobox protein 2) (XGBX-2)
          Length = 340

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +1

Query: 124 AIAGPPPEENKGPDGKSASRRSTRFKEENAYVEVTLDVRADDAVAVQSVRAAGETPD 294
           A  GP   + K   GK A  +    KE++  ++  LD  +DD ++ Q+     +TP+
Sbjct: 166 ASLGPVRGQGKEESGKEAEGKG---KEDSYLMDSDLDYSSDDNISCQTAHKEEDTPE 219

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>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 366  EAGEPAPAGQEHDRRRARAQGPPVPQPERGHAGQLARGGE 485
            + GE  PAG       A A+GP  PQ  RG  G+    G+
Sbjct: 1054 DRGETGPAGPAGPIGPAGARGPAGPQGPRGDKGETGEQGD 1093

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>C1QT7_MOUSE (Q8BVD7) Complement C1q tumor necrosis factor-related protein 7|
           precursor
          Length = 289

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 366 EAGEPAPAGQEHDRRRARAQGPPVPQPERGHAG 464
           E G+  P G E ++      GPP P+ +RG  G
Sbjct: 99  ETGKKGPIGPEGEKGEVGPAGPPGPKGDRGDQG 131

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>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 14/50 (28%)
 Frame = +3

Query: 369 AGEPAPAGQEHDRRR--------------ARAQGPPVPQPERGHAGQLAR 476
           +G P+P+ + HD RR               R +  P P+P + H G+L R
Sbjct: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTR 170

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>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 14/50 (28%)
 Frame = +3

Query: 369 AGEPAPAGQEHDRRR--------------ARAQGPPVPQPERGHAGQLAR 476
           +G P+P+ + HD RR               R +  P P+P + H G+L R
Sbjct: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTR 170

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>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 14/50 (28%)
 Frame = +3

Query: 369 AGEPAPAGQEHDRRR--------------ARAQGPPVPQPERGHAGQLAR 476
           +G P+P+ + HD RR               R +  P P+P + H G+L R
Sbjct: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTR 170

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>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 14/50 (28%)
 Frame = +3

Query: 369 AGEPAPAGQEHDRRR--------------ARAQGPPVPQPERGHAGQLAR 476
           +G P+P+ + HD RR               R +  P P+P + H G+L R
Sbjct: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTR 170

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>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related|
           protein LDC2)
          Length = 305

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 14/50 (28%)
 Frame = +3

Query: 369 AGEPAPAGQEHDRRR--------------ARAQGPPVPQPERGHAGQLAR 476
           +G P+P+ + HD RR               R +  P P+P + H G+L R
Sbjct: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTR 170

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>TSSC4_MOUSE (Q9JHE7) Protein TSSC4|
          Length = 317

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +3

Query: 318 RPVLEAQGRAEAHRVREAGEPAPAGQEHDRRRARAQGPPVPQPERGHAGQ 467
           +PV +++ RAE  RV + G  + AG E     A   GP   +   GH GQ
Sbjct: 214 KPVRDSEARAERKRVLKKGVGSGAGGEAAVELAHLAGPEA-EEWSGHQGQ 262

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>MAP1A_RAT (P34926) Microtubule-associated protein 1A (MAP 1A) [Contains: MAP1|
            light chain LC2]
          Length = 2774

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +3

Query: 57   CSLLVCFTTAADGHGEAGRERQCHCRATAGREQGPGRQEREPAKH 191
            C   V F    DG G   R R C  R +   ++GP  QE  P +H
Sbjct: 1669 CDRKVWFPHELDGQG--ARPRYCEERESTFLDEGPDEQEITPLQH 1711

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>CO9A2_MOUSE (Q07643) Collagen alpha-2(IX) chain precursor|
          Length = 688

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 19/59 (32%), Positives = 23/59 (38%)
 Frame = +3

Query: 309 PERRPVLEAQGRAEAHRVREAGEPAPAGQEHDRRRARAQGPPVPQPERGHAGQLARGGE 485
           P +R +L   GR         G+P P G           GPP PQ  RG+ G     GE
Sbjct: 194 PGKRGILGDPGRQ--------GKPGPKGDVGASGEQGIPGPPGPQGIRGYPGMAGPKGE 244


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,132,785
Number of Sequences: 219361
Number of extensions: 1213909
Number of successful extensions: 7579
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 5739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7505
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4373119116
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result