ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart26c09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_480900.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1044 Score = 228 bits (115), Expect = 1e-56 Identities = 235/275 (85%) Strand = Plus / Plus Query: 207 gagctgtcgctggggcccgaccccacgccgcgcggggtatcctatctccgcgcgctcgcg 266 ||||| |||||||||||||| ||||||||||||||||| |||| ||||||||||| ||| Sbjct: 196 gagctctcgctggggcccgagcccacgccgcgcggggtggcctacctccgcgcgctggcg 255 Query: 267 gtggcgtctcaggcgcggtcccacgcagccgggatcgctgcctcggggctgcgcgcgcag 326 | ||||| |||||| |||||| ||| || |||||||| ||| ||||||||||||||||| Sbjct: 256 gccgcgtcgcaggcgaggtcccgcgcggcggggatcgcggccgcggggctgcgcgcgcag 315 Query: 327 gccgcggagtatcaggcggaggcagcgcgcttgcgggaggcgctggagagggccggcctt 386 ||||||||||| | || ||||| |||||| ||||||||||||||||| |||| || || Sbjct: 316 gccgcggagtaccgcgccgaggcggcgcgcctgcgggaggcgctggagcgggcagggctc 375 Query: 387 gcgcgggacgcgctccctccgcctgctgcgtcggccgcgcgcgccgtcgccgctgtcgcg 446 ||||||||||||||| | ||||| || || | ||||||||||||| ||||| ||||| Sbjct: 376 gcgcgggacgcgctctcgccgcccgcggccgtgtccgcgcgcgccgtggccgccgtcgcc 435 Query: 447 aaccttctggccatccgcgacaccgaaatgagcag 481 ||||| || |||||||||||||| || |||||||| Sbjct: 436 aacctcctcgccatccgcgacacggagatgagcag 470 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 123 gtcgccgaggtcaacgcgtggctggcatccctggcagcggagg 165 ||||||||||||||||||||| |||| ||||| || ||||||| Sbjct: 70 gtcgccgaggtcaacgcgtggttggcctccctcgcggcggagg 112
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 228 bits (115), Expect = 1e-56 Identities = 235/275 (85%) Strand = Plus / Minus Query: 207 gagctgtcgctggggcccgaccccacgccgcgcggggtatcctatctccgcgcgctcgcg 266 ||||| |||||||||||||| ||||||||||||||||| |||| ||||||||||| ||| Sbjct: 8493536 gagctctcgctggggcccgagcccacgccgcgcggggtggcctacctccgcgcgctggcg 8493477 Query: 267 gtggcgtctcaggcgcggtcccacgcagccgggatcgctgcctcggggctgcgcgcgcag 326 | ||||| |||||| |||||| ||| || |||||||| ||| ||||||||||||||||| Sbjct: 8493476 gccgcgtcgcaggcgaggtcccgcgcggcggggatcgcggccgcggggctgcgcgcgcag 8493417 Query: 327 gccgcggagtatcaggcggaggcagcgcgcttgcgggaggcgctggagagggccggcctt 386 ||||||||||| | || ||||| |||||| ||||||||||||||||| |||| || || Sbjct: 8493416 gccgcggagtaccgcgccgaggcggcgcgcctgcgggaggcgctggagcgggcagggctc 8493357 Query: 387 gcgcgggacgcgctccctccgcctgctgcgtcggccgcgcgcgccgtcgccgctgtcgcg 446 ||||||||||||||| | ||||| || || | ||||||||||||| ||||| ||||| Sbjct: 8493356 gcgcgggacgcgctctcgccgcccgcggccgtgtccgcgcgcgccgtggccgccgtcgcc 8493297 Query: 447 aaccttctggccatccgcgacaccgaaatgagcag 481 ||||| || |||||||||||||| || |||||||| Sbjct: 8493296 aacctcctcgccatccgcgacacggagatgagcag 8493262 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 123 gtcgccgaggtcaacgcgtggctggcatccctggcagcggagg 165 ||||||||||||||||||||| |||| ||||| || ||||||| Sbjct: 8493662 gtcgccgaggtcaacgcgtggttggcctccctcgcggcggagg 8493620
>dbj|AP005249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0087F21 Length = 187401 Score = 228 bits (115), Expect = 1e-56 Identities = 235/275 (85%) Strand = Plus / Minus Query: 207 gagctgtcgctggggcccgaccccacgccgcgcggggtatcctatctccgcgcgctcgcg 266 ||||| |||||||||||||| ||||||||||||||||| |||| ||||||||||| ||| Sbjct: 5447 gagctctcgctggggcccgagcccacgccgcgcggggtggcctacctccgcgcgctggcg 5388 Query: 267 gtggcgtctcaggcgcggtcccacgcagccgggatcgctgcctcggggctgcgcgcgcag 326 | ||||| |||||| |||||| ||| || |||||||| ||| ||||||||||||||||| Sbjct: 5387 gccgcgtcgcaggcgaggtcccgcgcggcggggatcgcggccgcggggctgcgcgcgcag 5328 Query: 327 gccgcggagtatcaggcggaggcagcgcgcttgcgggaggcgctggagagggccggcctt 386 ||||||||||| | || ||||| |||||| ||||||||||||||||| |||| || || Sbjct: 5327 gccgcggagtaccgcgccgaggcggcgcgcctgcgggaggcgctggagcgggcagggctc 5268 Query: 387 gcgcgggacgcgctccctccgcctgctgcgtcggccgcgcgcgccgtcgccgctgtcgcg 446 ||||||||||||||| | ||||| || || | ||||||||||||| ||||| ||||| Sbjct: 5267 gcgcgggacgcgctctcgccgcccgcggccgtgtccgcgcgcgccgtggccgccgtcgcc 5208 Query: 447 aaccttctggccatccgcgacaccgaaatgagcag 481 ||||| || |||||||||||||| || |||||||| Sbjct: 5207 aacctcctcgccatccgcgacacggagatgagcag 5173 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 123 gtcgccgaggtcaacgcgtggctggcatccctggcagcggagg 165 ||||||||||||||||||||| |||| ||||| || ||||||| Sbjct: 5573 gtcgccgaggtcaacgcgtggttggcctccctcgcggcggagg 5531
>dbj|AP004657.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0031C02 Length = 138843 Score = 228 bits (115), Expect = 1e-56 Identities = 235/275 (85%) Strand = Plus / Minus Query: 207 gagctgtcgctggggcccgaccccacgccgcgcggggtatcctatctccgcgcgctcgcg 266 ||||| |||||||||||||| ||||||||||||||||| |||| ||||||||||| ||| Sbjct: 23079 gagctctcgctggggcccgagcccacgccgcgcggggtggcctacctccgcgcgctggcg 23020 Query: 267 gtggcgtctcaggcgcggtcccacgcagccgggatcgctgcctcggggctgcgcgcgcag 326 | ||||| |||||| |||||| ||| || |||||||| ||| ||||||||||||||||| Sbjct: 23019 gccgcgtcgcaggcgaggtcccgcgcggcggggatcgcggccgcggggctgcgcgcgcag 22960 Query: 327 gccgcggagtatcaggcggaggcagcgcgcttgcgggaggcgctggagagggccggcctt 386 ||||||||||| | || ||||| |||||| ||||||||||||||||| |||| || || Sbjct: 22959 gccgcggagtaccgcgccgaggcggcgcgcctgcgggaggcgctggagcgggcagggctc 22900 Query: 387 gcgcgggacgcgctccctccgcctgctgcgtcggccgcgcgcgccgtcgccgctgtcgcg 446 ||||||||||||||| | ||||| || || | ||||||||||||| ||||| ||||| Sbjct: 22899 gcgcgggacgcgctctcgccgcccgcggccgtgtccgcgcgcgccgtggccgccgtcgcc 22840 Query: 447 aaccttctggccatccgcgacaccgaaatgagcag 481 ||||| || |||||||||||||| || |||||||| Sbjct: 22839 aacctcctcgccatccgcgacacggagatgagcag 22805 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 123 gtcgccgaggtcaacgcgtggctggcatccctggcagcggagg 165 ||||||||||||||||||||| |||| ||||| || ||||||| Sbjct: 23205 gtcgccgaggtcaacgcgtggttggcctccctcgcggcggagg 23163
>gb|BT018091.1| Zea mays clone EL01N0552D12.c mRNA sequence Length = 1282 Score = 151 bits (76), Expect = 3e-33 Identities = 241/296 (81%) Strand = Plus / Plus Query: 207 gagctgtcgctggggcccgaccccacgccgcgcggggtatcctatctccgcgcgctcgcg 266 |||||||||||||| ||||||||||| ||||||||||| |||| ||||||||||| || Sbjct: 179 gagctgtcgctgggtcccgaccccacaccgcgcggggtggcctacctccgcgcgctggcc 238 Query: 267 gtggcgtctcaggcgcggtcccacgcagccgggatcgctgcctcggggctgcgcgcgcag 326 || || |||| |||||||| ||| ||||| ||||| || |||||||||| |||||| Sbjct: 239 tctgcttcgcaggggcggtcccgcgctgccggaatcgcggctgcggggctgcgtgcgcag 298 Query: 327 gccgcggagtatcaggcggaggcagcgcgcttgcgggaggcgctggagagggccggcctt 386 || || ||||| | || ||||| ||||| ||||||||||| || ||| |||| || || Sbjct: 299 gcggccgagtaccgcgccgaggcggcgcggttgcgggaggctctcgagcgggcggggctc 358 Query: 387 gcgcgggacgcgctccctccgcctgctgcgtcggccgcgcgcgccgtcgccgctgtcgcg 446 ||| ||||||| ||||| || ||||| || |||| || || ||||| || || ||||| Sbjct: 359 gcgagggacgcactcccaccacctgcagccgcggcggcacgagccgttgctgcagtcgct 418 Query: 447 aaccttctggccatccgcgacaccgaaatgagcagcttcgtggtggccagtgcaga 502 ||||| || |||||||| |||||||| ||||||||||| || ||||| |||||||| Sbjct: 419 aacctcctcgccatccgtgacaccgagatgagcagctttgtagtggcaagtgcaga 474 Score = 48.1 bits (24), Expect = 0.029 Identities = 30/32 (93%) Strand = Plus / Plus Query: 58 caatggatcacaccgcggagcacctcgacccc 89 ||||||||||| |||| ||||||||||||||| Sbjct: 30 caatggatcacgccgccgagcacctcgacccc 61
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Minus Query: 413 tgcgtcggccgcgcgcgccgtcgc 436 |||||||||||||||||||||||| Sbjct: 3867627 tgcgtcggccgcgcgcgccgtcgc 3867604
>dbj|AP006125.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT43I02, TM0210a, complete sequence Length = 55211 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 166 gcggcggagtgggagggcgcggcggtggggc 196 |||||||||| |||||||| ||||||||||| Sbjct: 18203 gcggcggagtcggagggcgaggcggtggggc 18173
>ref|NM_193794.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1419 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 424 cgcgcgccgtcgccgctgtcgc 445 |||||||||||||||||||||| Sbjct: 905 cgcgcgccgtcgccgctgtcgc 884
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 420 gccgcgcgcgccgtcgccgctg 441 |||||||||||||||||||||| Sbjct: 2836332 gccgcgcgcgccgtcgccgctg 2836353 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 267 gtggcgtctcaggcgcggtccc 288 |||||||||||||||||||||| Sbjct: 2788471 gtggcgtctcaggcgcggtccc 2788450
>gb|AC094963.9| Rattus norvegicus X BAC CH230-6L20 (Children's Hospital Oakland Research Institute) complete sequence Length = 213440 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 6 tttttgctagagaaaaggaact 27 |||||||||||||||||||||| Sbjct: 110772 tttttgctagagaaaaggaact 110751
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 424 cgcgcgccgtcgccgctgtcgc 445 |||||||||||||||||||||| Sbjct: 18217697 cgcgcgccgtcgccgctgtcgc 18217676 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 160 cggagggcggcggagtgggagggcg 184 |||||| |||||||||||||||||| Sbjct: 4807440 cggaggccggcggagtgggagggcg 4807416 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 165 ggcggcggagtgggagggcgcggcggtg 192 ||||||||||| |||||||| ||||||| Sbjct: 41451183 ggcggcggagtcggagggcgtggcggtg 41451156 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 165 ggcggcggagtgggagggcgcggcggtg 192 ||||||||||| |||||||| ||||||| Sbjct: 41395691 ggcggcggagtcggagggcgtggcggtg 41395664 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 cggccgcgcgcgccgtcgcc 437 |||||||||||||||||||| Sbjct: 23778994 cggccgcgcgcgccgtcgcc 23778975
>dbj|AP003202.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1075D06 Length = 130528 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 424 cgcgcgccgtcgccgctgtcgc 445 |||||||||||||||||||||| Sbjct: 69142 cgcgcgccgtcgccgctgtcgc 69121
>ref|NM_189653.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 783 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 160 cggagggcggcggagtgggagggcg 184 |||||| |||||||||||||||||| Sbjct: 456 cggaggccggcggagtgggagggcg 432
>gb|AC137748.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0076A09, complete sequence Length = 157010 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 160 cggagggcggcggagtgggagggcg 184 |||||| |||||||||||||||||| Sbjct: 107640 cggaggccggcggagtgggagggcg 107664
>gb|AC137747.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0051L16, complete sequence Length = 175461 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 160 cggagggcggcggagtgggagggcg 184 |||||| |||||||||||||||||| Sbjct: 11459 cggaggccggcggagtgggagggcg 11483
>gb|DQ207939.1| Gallus gallus MHC class II antigen mRNA, complete cds Length = 771 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 181 ggcgcggcggtggggcggtggtctccgag 209 ||||| || |||||||||||||||||||| Sbjct: 443 ggcgccgcagtggggcggtggtctccgag 471
>emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete genome; segment 14/16 Length = 346287 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 419 ggccgcgcgcgccgtcgccgc 439 ||||||||||||||||||||| Sbjct: 47090 ggccgcgcgcgccgtcgccgc 47110
>emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete genome; segment 12/16 Length = 347137 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 221 gcccgaccccacgccgcgcgg 241 ||||||||||||||||||||| Sbjct: 143227 gcccgaccccacgccgcgcgg 143247
>emb|BX640433.1| Bordetella parapertussis strain 12822, complete genome; segment 11/14 Length = 349305 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 221 gcccgaccccacgccgcgcgg 241 ||||||||||||||||||||| Sbjct: 79720 gcccgaccccacgccgcgcgg 79740
>emb|BX640422.1| Bordetella pertussis strain Tohama I, complete genome; segment 12/12 Length = 257701 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 419 ggccgcgcgcgccgtcgccgc 439 ||||||||||||||||||||| Sbjct: 97282 ggccgcgcgcgccgtcgccgc 97262
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 170 cggagtgggagggcgcggcggtggggcgg 198 ||||| ||||||| ||||||||||||||| Sbjct: 25557901 cggagagggagggggcggcggtggggcgg 25557873
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 160 cggagggcggcggagtgggagggcg 184 |||||| |||||||||||||||||| Sbjct: 15078890 cggaggccggcggagtgggagggcg 15078914
>dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0710E05 Length = 179714 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 160 cggagggcggcggagtgggagggcg 184 |||||| |||||||||||||||||| Sbjct: 52089 cggaggccggcggagtgggagggcg 52065
>dbj|AP003573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0523F01 Length = 146419 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 170 cggagtgggagggcgcggcggtggggcgg 198 ||||| ||||||| ||||||||||||||| Sbjct: 76218 cggagagggagggggcggcggtggggcgg 76190
>ref|NM_192666.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 501 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 cggccgcgcgcgccgtcgcc 437 |||||||||||||||||||| Sbjct: 118 cggccgcgcgcgccgtcgcc 99
>ref|XM_473042.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1002 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 gcgtcggcgtccgcgcccgc 118 |||||||||||||||||||| Sbjct: 875 gcgtcggcgtccgcgcccgc 856
>ref|XM_472998.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 708 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 ctgctgcgtcggccgcgcgcgccg 432 |||| ||||||||||||||||||| Sbjct: 44 ctgcggcgtcggccgcgcgcgccg 67
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 gctgcgcgcgcaggccgcgg 333 |||||||||||||||||||| Sbjct: 2936335 gctgcgcgcgcaggccgcgg 2936354
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 gctgcgcgcgcaggccgcgg 333 |||||||||||||||||||| Sbjct: 3428363 gctgcgcgcgcaggccgcgg 3428382
>ref|XM_864627.1| PREDICTED: Bos taurus similar to tetraspanin 12 (LOC613639), partial mRNA Length = 1992 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 tttttgctagagaaaaggaa 25 |||||||||||||||||||| Sbjct: 1770 tttttgctagagaaaaggaa 1751
>ref|XM_359980.1| Magnaporthe grisea 70-15 predicted protein (MG05355.4) partial mRNA Length = 1692 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 gggcggcggagtgggagggcgcgg 187 ||||||||| |||||||||||||| Sbjct: 1133 gggcggcggcgtgggagggcgcgg 1156
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 gctgcgcgcgcaggccgcgg 333 |||||||||||||||||||| Sbjct: 466058 gctgcgcgcgcaggccgcgg 466077
>gb|AE009298.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 68 of 187 of the complete sequence Length = 10569 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 ggcgctggagagggccggcc 384 |||||||||||||||||||| Sbjct: 198 ggcgctggagagggccggcc 179
>gb|AE008316.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 120 of 187 of the complete sequence Length = 31220 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 ggcgctggagagggccggcc 384 |||||||||||||||||||| Sbjct: 10341 ggcgctggagagggccggcc 10360
>gb|AC108870.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0682E05, complete sequence Length = 162223 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 184 gcggcggtggggcggtggtctccg 207 |||||||| ||||||||||||||| Sbjct: 146999 gcggcggttgggcggtggtctccg 146976
>ref|XM_541567.2| PREDICTED: Canis familiaris similar to F28C1.3a (LOC484452), mRNA Length = 2583 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 94 cctcggcgtcggcgtccgcgcccg 117 ||||||||||| |||||||||||| Sbjct: 538 cctcggcgtcgccgtccgcgcccg 515
>gb|BC114167.1| Bos taurus similar to tetraspanin 12, mRNA (cDNA clone MGC:137611 IMAGE:8177581), complete cds Length = 2327 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 tttttgctagagaaaaggaa 25 |||||||||||||||||||| Sbjct: 2083 tttttgctagagaaaaggaa 2064
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 gctgcgcgcgcaggccgcgg 333 |||||||||||||||||||| Sbjct: 275950 gctgcgcgcgcaggccgcgg 275969
>emb|AL731617.3|OSJN00261 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0076N16, complete sequence Length = 146313 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 ctgctgcgtcggccgcgcgcgccg 432 |||| ||||||||||||||||||| Sbjct: 124263 ctgcggcgtcggccgcgcgcgccg 124286
>emb|AL662938.3|OSJN00138 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ990528_30, complete sequence Length = 88547 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 ctgctgcgtcggccgcgcgcgccg 432 |||| ||||||||||||||||||| Sbjct: 19777 ctgcggcgtcggccgcgcgcgccg 19800
>emb|AJ277359.1|TSP277359 Treponema sp. SO4A1 partial flaB2 gene for flagelline Length = 813 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 ccatccgcgacaccgaaatg 476 |||||||||||||||||||| Sbjct: 713 ccatccgcgacaccgaaatg 732
>gb|AC151617.2| Emiliania huxleyi clone JGIACCU-13M3, complete sequence Length = 33456 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 418 cggccgcgcgcgccgtcgccgctgtcgc 445 ||||||||||| | |||||||||||||| Sbjct: 19158 cggccgcgcgctctgtcgccgctgtcgc 19131 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 418 cggccgcgcgcgccgtcgccgctgtcgc 445 ||||||||||| | |||||||||||||| Sbjct: 18975 cggccgcgcgctctgtcgccgctgtcgc 18948
>emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in linkage group 25, complete sequence Length = 169168 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 gccgcgcgcgccgtcgccgc 439 |||||||||||||||||||| Sbjct: 99741 gccgcgcgcgccgtcgccgc 99760
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 263 cgcggtggcgtctcaggcgcggtc 286 |||||||||||| ||||||||||| Sbjct: 2261536 cgcggtggcgtcccaggcgcggtc 2261513
>gb|AC110088.5| Homo sapiens BAC clone RP11-783N5 from 4, complete sequence Length = 48126 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 gcctcggggctgcgcgcgca 325 |||||||||||||||||||| Sbjct: 40184 gcctcggggctgcgcgcgca 40203
>gb|AE012524.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 432 of 460 of the complete genome Length = 10692 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 cggggctgcgcgcgcaggcc 329 |||||||||||||||||||| Sbjct: 3593 cggggctgcgcgcgcaggcc 3612
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 cggggctgcgcgcgcaggcc 329 |||||||||||||||||||| Sbjct: 4850227 cggggctgcgcgcgcaggcc 4850246
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 gcgtcggcgtccgcgcccgc 118 |||||||||||||||||||| Sbjct: 24866312 gcgtcggcgtccgcgcccgc 24866293 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 ctgctgcgtcggccgcgcgcgccg 432 |||| ||||||||||||||||||| Sbjct: 24564632 ctgcggcgtcggccgcgcgcgccg 24564655
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 gcgtcggcgtccgcgcccgc 118 |||||||||||||||||||| Sbjct: 24776576 gcgtcggcgtccgcgcccgc 24776557
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 184 gcggcggtggggcggtggtctccg 207 |||||||| ||||||||||||||| Sbjct: 25656952 gcggcggttgggcggtggtctccg 25656929
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 cggccgcgcgcgccgtcgcc 437 |||||||||||||||||||| Sbjct: 19987517 cggccgcgcgcgccgtcgcc 19987498 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 gccgcgcgcgccgtcgccgc 439 |||||||||||||||||||| Sbjct: 18220482 gccgcgcgcgccgtcgccgc 18220501
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 cgcgcgcgccgtcgccgctg 441 |||||||||||||||||||| Sbjct: 27951955 cgcgcgcgccgtcgccgctg 27951936
>dbj|AP003330.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1085F01 Length = 163671 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 cggccgcgcgcgccgtcgcc 437 |||||||||||||||||||| Sbjct: 156698 cggccgcgcgcgccgtcgcc 156679
>dbj|AP004031.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0432C03 Length = 164394 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 165 ggcggcggagtgggagggcgcggcggtg 192 ||||||||||| |||||||| ||||||| Sbjct: 142676 ggcggcggagtcggagggcgtggcggtg 142649 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 165 ggcggcggagtgggagggcgcggcggtg 192 ||||||||||| |||||||| ||||||| Sbjct: 87184 ggcggcggagtcggagggcgtggcggtg 87157
>dbj|AP004073.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0614D08 Length = 147548 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 165 ggcggcggagtgggagggcgcggcggtg 192 ||||||||||| |||||||| ||||||| Sbjct: 7476 ggcggcggagtcggagggcgtggcggtg 7449
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 gcgcggcggtggggcggtgg 201 |||||||||||||||||||| Sbjct: 5954864 gcgcggcggtggggcggtgg 5954883 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 gctgcgcgcgcaggccgcgg 333 |||||||||||||||||||| Sbjct: 2254648 gctgcgcgcgcaggccgcgg 2254667
>dbj|AP003022.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0681B11 Length = 144091 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 cggccgcgcgcgccgtcgcc 437 |||||||||||||||||||| Sbjct: 59579 cggccgcgcgcgccgtcgcc 59560
>dbj|AP005759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0556A05 Length = 158189 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 gccgcgcgcgccgtcgccgc 439 |||||||||||||||||||| Sbjct: 69206 gccgcgcgcgccgtcgccgc 69225
>dbj|AP006855.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, fosmid clone:OSJNOa178M01 Length = 34955 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 cggccgcgcgcgccgtcgcc 437 |||||||||||||||||||| Sbjct: 7540 cggccgcgcgcgccgtcgcc 7521
>dbj|AP003687.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0660F12 Length = 147203 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 165 ggcggcggagtgggagggcgcggcggtg 192 ||||||||||| |||||||| ||||||| Sbjct: 19382 ggcggcggagtcggagggcgtggcggtg 19355
>dbj|AP004178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1123_G04 Length = 124666 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 cgcgcgcgccgtcgccgctg 441 |||||||||||||||||||| Sbjct: 79407 cgcgcgcgccgtcgccgctg 79388
>dbj|AK121024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049O11, full insert sequence Length = 1396 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 gcgtcggcgtccgcgcccgc 118 |||||||||||||||||||| Sbjct: 1001 gcgtcggcgtccgcgcccgc 982
>dbj|AK109908.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-G07, full insert sequence Length = 1859 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 cgcgcgcgccgtcgccgctg 441 |||||||||||||||||||| Sbjct: 1228 cgcgcgcgccgtcgccgctg 1247
>dbj|AK099765.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094O21, full insert sequence Length = 2858 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 cggccgcgcgcgccgtcgcc 437 |||||||||||||||||||| Sbjct: 55 cggccgcgcgcgccgtcgcc 36
>dbj|AK067145.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098M04, full insert sequence Length = 1389 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 cggccgcgcgcgccgtcgcc 437 |||||||||||||||||||| Sbjct: 1144 cggccgcgcgcgccgtcgcc 1163
>dbj|AK066047.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013049C10, full insert sequence Length = 4344 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 184 gcggcggtggggcggtggtctccg 207 |||||||| ||||||||||||||| Sbjct: 4104 gcggcggttgggcggtggtctccg 4127
>dbj|AK063050.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-E04, full insert sequence Length = 456 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 184 gcggcggtggggcggtggtctccg 207 |||||||| ||||||||||||||| Sbjct: 262 gcggcggttgggcggtggtctccg 285
>dbj|AB091435.1| Burkholderia multivorans genes for probable lipoprotein transmembrane, 3-isopropylmalate dehydratase large and small subunits, 3-isopropylmalate dehydrogenase oxidoreductase, aspartate-semialdehyde dehydrogenase, probable transmembrane protein, tRNA pseudouridine synthase, N-(5'-phosphoribosyl) anthranilate isomerase, tryptophan synthase beta chain, probable DNA-methyltransferasee, tryptophan synthase alpha chain, acetyl-CoA carboxylase beta subunit, partial and complete cds Length = 12977 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 cgcgccgtcgccgctgtcgc 445 |||||||||||||||||||| Sbjct: 7827 cgcgccgtcgccgctgtcgc 7846
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 263 cgcggtggcgtctcaggcgcggtc 286 |||||||||||| ||||||||||| Sbjct: 2283882 cgcggtggcgtcccaggcgcggtc 2283859
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 419 ggccgcgcgcgccgtcgccg 438 |||||||||||||||||||| Sbjct: 991315 ggccgcgcgcgccgtcgccg 991296
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 184 gcggcggtggggcggtggtctccg 207 |||||||| ||||||||||||||| Sbjct: 25975622 gcggcggttgggcggtggtctccg 25975599
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 gcgtcggcgtccgcgcccgc 118 |||||||||||||||||||| Sbjct: 24704782 gcgtcggcgtccgcgcccgc 24704763
>emb|AL954829.6|CNS08CD5 Oryza sativa chromosome 12, . BAC OSJNBa0044E20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 140383 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 gcgtcggcgtccgcgcccgc 118 |||||||||||||||||||| Sbjct: 83733 gcgtcggcgtccgcgcccgc 83714
>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08, complete sequence Length = 170765 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 gcgtcggcgtccgcgcccgc 118 |||||||||||||||||||| Sbjct: 128028 gcgtcggcgtccgcgcccgc 128009
>emb|AJ006439.1|PLA6439 Populus lasiocarpa 18S, 5.8S and 28S rRNA genes and internal transcribed spacers (ITS1 and ITS2) Length = 653 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 ccccgcagcctcggcgtcgg 105 |||||||||||||||||||| Sbjct: 195 ccccgcagcctcggcgtcgg 214 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,155,044 Number of Sequences: 3902068 Number of extensions: 3155044 Number of successful extensions: 79511 Number of sequences better than 10.0: 75 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75607 Number of HSP's gapped (non-prelim): 3899 length of query: 519 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 496 effective length of database: 17,143,297,704 effective search space: 8503075661184 effective search space used: 8503075661184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
