>VE6_HPV94 (Q705D2) Protein E6|
          Length = 148

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +1

Query: 127 MKTRRGACYSCHEP-AAEEPEMHRRKRRR 210
           + T++  CY+CH+P   EE + HR +RRR
Sbjct: 95  INTQQIRCYTCHKPLVKEEKDRHRNERRR 123

>YNF7_RHIME (Q52992) Hypothetical 25.1 kDa protein in nfe locus (ORFB) (ORF7)|
          Length = 232

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 22/57 (38%), Positives = 30/57 (52%)
 Frame = -3

Query: 482 AQRCRKRWAESDQLLARTARHRGDTLARTTLLWPNSLNLLHVMVAPARSAGERADAA 312
           + RCR+R A+++    RTA  R DT  RT    PN   LL  ++A A + G    AA
Sbjct: 78  SSRCRRRRADAEAR-RRTAHARHDTNLRTGERCPNESPLLAAILADATNLGLSRRAA 133

>VE6_HPV28 (P50802) Protein E6|
          Length = 146

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 133 TRRGACYSCHEP-AAEEPEMHRRKRRR 210
           T++  CY CH+P   EE + HR +RRR
Sbjct: 95  TQQVRCYMCHKPLVKEEKDRHRNERRR 121

>SSRP_XANCP (Q8PAL7) SsrA-binding protein|
          Length = 167

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -3

Query: 458 AESDQLLARTARHRGDTLARTTLLWPNSLNLLHVMVAPARSAGERADAA 312
           AE D++L R  R  G TL  T L W ++   L + +A  + + ++ DAA
Sbjct: 100 AEIDKVLTRVERE-GYTLVPTALYWSSNKVKLEIALAKGKQSHDKRDAA 147

>VE6_HPV10 (P36802) Protein E6|
          Length = 148

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +1

Query: 148 CYSCHEP-AAEEPEMHRRKRRR 210
           CY CH+P   EE + HR +RRR
Sbjct: 102 CYMCHKPLVREEKDRHRNERRR 123

>SSRP_XANAC (Q8PMB9) SsrA-binding protein|
          Length = 167

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -3

Query: 458 AESDQLLARTARHRGDTLARTTLLWPNSLNLLHVMVAPARSAGERADAA 312
           AE D++L+R  R  G TL  T L W ++   L + +A  +   ++ DAA
Sbjct: 100 AEIDKVLSRVERE-GYTLVPTALYWSSNKVKLEIALAKGKQNHDKRDAA 147

>VE6_HPV03 (P36799) Protein E6|
          Length = 152

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 133 TRRGACYSCHEP-AAEEPEMHRRKRRR 210
           T++  CY CH+P   EE + HR ++RR
Sbjct: 101 TQQIRCYMCHKPLVKEEKDRHRNEKRR 127

>SSRP_XANOR (Q5H194) SsrA-binding protein|
          Length = 167

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -3

Query: 458 AESDQLLARTARHRGDTLARTTLLWPNSLNLLHVMVAPARSAGERADAA 312
           AE D++L R  R  G TL  T L W ++   L + +A  +   ++ DAA
Sbjct: 100 AEIDKVLTRVERE-GYTLVPTALYWSSNKVKLEIALAKGKQNHDKRDAA 147

>ZN497_HUMAN (Q6ZNH5) Zinc finger protein 497|
          Length = 498

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -3

Query: 515 RR*HASRLPASAQRCRKRWAESDQLLARTARHRGD 411
           RR H+S  P     C K + ES QLL     H G+
Sbjct: 293 RRTHSSEKPFPCAECGKAFRESSQLLQHQRTHTGE 327

>VE6_HPV29 (P50803) Protein E6|
          Length = 148

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +1

Query: 148 CYSCHEP-AAEEPEMHRRKRRR 210
           CY CH+P   EE + HR ++RR
Sbjct: 102 CYMCHKPLVREEKDKHRNEKRR 123


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,017,866
Number of Sequences: 219361
Number of extensions: 1043188
Number of successful extensions: 4759
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4758
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4373119116
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)