Clone Name | bart26c05 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | VE6_HPV94 (Q705D2) Protein E6 | 32 | 1.2 | 2 | YNF7_RHIME (Q52992) Hypothetical 25.1 kDa protein in nfe locus (... | 32 | 1.5 | 3 | VE6_HPV28 (P50802) Protein E6 | 31 | 2.0 | 4 | SSRP_XANCP (Q8PAL7) SsrA-binding protein | 30 | 3.4 | 5 | VE6_HPV10 (P36802) Protein E6 | 30 | 4.4 | 6 | SSRP_XANAC (Q8PMB9) SsrA-binding protein | 30 | 5.8 | 7 | VE6_HPV03 (P36799) Protein E6 | 30 | 5.8 | 8 | SSRP_XANOR (Q5H194) SsrA-binding protein | 29 | 7.6 | 9 | ZN497_HUMAN (Q6ZNH5) Zinc finger protein 497 | 29 | 7.6 | 10 | VE6_HPV29 (P50803) Protein E6 | 29 | 9.9 |
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>VE6_HPV94 (Q705D2) Protein E6| Length = 148 Score = 32.0 bits (71), Expect = 1.2 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%) Frame = +1 Query: 127 MKTRRGACYSCHEP-AAEEPEMHRRKRRR 210 + T++ CY+CH+P EE + HR +RRR Sbjct: 95 INTQQIRCYTCHKPLVKEEKDRHRNERRR 123
>YNF7_RHIME (Q52992) Hypothetical 25.1 kDa protein in nfe locus (ORFB) (ORF7)| Length = 232 Score = 31.6 bits (70), Expect = 1.5 Identities = 22/57 (38%), Positives = 30/57 (52%) Frame = -3 Query: 482 AQRCRKRWAESDQLLARTARHRGDTLARTTLLWPNSLNLLHVMVAPARSAGERADAA 312 + RCR+R A+++ RTA R DT RT PN LL ++A A + G AA Sbjct: 78 SSRCRRRRADAEAR-RRTAHARHDTNLRTGERCPNESPLLAAILADATNLGLSRRAA 133
>VE6_HPV28 (P50802) Protein E6| Length = 146 Score = 31.2 bits (69), Expect = 2.0 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%) Frame = +1 Query: 133 TRRGACYSCHEP-AAEEPEMHRRKRRR 210 T++ CY CH+P EE + HR +RRR Sbjct: 95 TQQVRCYMCHKPLVKEEKDRHRNERRR 121
>SSRP_XANCP (Q8PAL7) SsrA-binding protein| Length = 167 Score = 30.4 bits (67), Expect = 3.4 Identities = 17/49 (34%), Positives = 27/49 (55%) Frame = -3 Query: 458 AESDQLLARTARHRGDTLARTTLLWPNSLNLLHVMVAPARSAGERADAA 312 AE D++L R R G TL T L W ++ L + +A + + ++ DAA Sbjct: 100 AEIDKVLTRVERE-GYTLVPTALYWSSNKVKLEIALAKGKQSHDKRDAA 147
>VE6_HPV10 (P36802) Protein E6| Length = 148 Score = 30.0 bits (66), Expect = 4.4 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%) Frame = +1 Query: 148 CYSCHEP-AAEEPEMHRRKRRR 210 CY CH+P EE + HR +RRR Sbjct: 102 CYMCHKPLVREEKDRHRNERRR 123
>SSRP_XANAC (Q8PMB9) SsrA-binding protein| Length = 167 Score = 29.6 bits (65), Expect = 5.8 Identities = 17/49 (34%), Positives = 27/49 (55%) Frame = -3 Query: 458 AESDQLLARTARHRGDTLARTTLLWPNSLNLLHVMVAPARSAGERADAA 312 AE D++L+R R G TL T L W ++ L + +A + ++ DAA Sbjct: 100 AEIDKVLSRVERE-GYTLVPTALYWSSNKVKLEIALAKGKQNHDKRDAA 147
>VE6_HPV03 (P36799) Protein E6| Length = 152 Score = 29.6 bits (65), Expect = 5.8 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%) Frame = +1 Query: 133 TRRGACYSCHEP-AAEEPEMHRRKRRR 210 T++ CY CH+P EE + HR ++RR Sbjct: 101 TQQIRCYMCHKPLVKEEKDRHRNEKRR 127
>SSRP_XANOR (Q5H194) SsrA-binding protein| Length = 167 Score = 29.3 bits (64), Expect = 7.6 Identities = 17/49 (34%), Positives = 26/49 (53%) Frame = -3 Query: 458 AESDQLLARTARHRGDTLARTTLLWPNSLNLLHVMVAPARSAGERADAA 312 AE D++L R R G TL T L W ++ L + +A + ++ DAA Sbjct: 100 AEIDKVLTRVERE-GYTLVPTALYWSSNKVKLEIALAKGKQNHDKRDAA 147
>ZN497_HUMAN (Q6ZNH5) Zinc finger protein 497| Length = 498 Score = 29.3 bits (64), Expect = 7.6 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = -3 Query: 515 RR*HASRLPASAQRCRKRWAESDQLLARTARHRGD 411 RR H+S P C K + ES QLL H G+ Sbjct: 293 RRTHSSEKPFPCAECGKAFRESSQLLQHQRTHTGE 327
>VE6_HPV29 (P50803) Protein E6| Length = 148 Score = 28.9 bits (63), Expect = 9.9 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%) Frame = +1 Query: 148 CYSCHEP-AAEEPEMHRRKRRR 210 CY CH+P EE + HR ++RR Sbjct: 102 CYMCHKPLVREEKDKHRNEKRR 123 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,017,866 Number of Sequences: 219361 Number of extensions: 1043188 Number of successful extensions: 4759 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 3787 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4758 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4373119116 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)