ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart26c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1US29_HCMVA (P09705) Hypothetical protein HHRF4 30 4.3
2CAH5B_MOUSE (Q9QZA0) Carbonic anhydrase 5B, mitochondrial precur... 30 5.6
3PI5PA_HUMAN (Q15735) Phosphatidylinositol 4,5-bisphosphate 5-pho... 29 7.4
4CAH5B_HUMAN (Q9Y2D0) Carbonic anhydrase 5B, mitochondrial precur... 29 7.4
5CAH5B_RAT (Q66HG6) Carbonic anhydrase 5B, mitochondrial precurso... 29 9.6

>US29_HCMVA (P09705) Hypothetical protein HHRF4|
          Length = 462

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 340 SSVGTTRSKCLDSGPTCAAHCHVGSGPNPRISTATGRRPRCLSSPS 203
           S +G T S+      TC AH   G  P P  STAT +    L++P+
Sbjct: 381 SDIGDTASET-----TCVAHATYGEPPEPARSTATVQECTVLTAPN 421



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>CAH5B_MOUSE (Q9QZA0) Carbonic anhydrase 5B, mitochondrial precursor (EC|
           4.2.1.1) (Carbonic anhydrase VB) (Carbonate dehydratase
           VB) (CA-VB)
          Length = 317

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 75  SLLNAVFRRAFTSAGLRPSSVAVDAETTLHFWAHXXXXXXXXXDGDDK 218
           S +N  +R +    GL+P +++ D  T LH W +         D  DK
Sbjct: 65  SPINIRWRDSVYDPGLKPLTISYDPATCLHIWNNGYSFLVEFEDSTDK 112



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>PI5PA_HUMAN (Q15735) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC|
           3.1.3.56)
          Length = 1006

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = -1

Query: 376 RSGARVVDAPKK----SSVGTTRSKCLDSGPTCAAHCHVGSGPNPRISTATGRRPRCLSS 209
           ++ AR  DAP      +S G  +     SGPT +  C + + P+PR+S +   RP  L S
Sbjct: 232 QTSARKRDAPAPRPLPASEGHLQPPAQTSGPTGSPPC-IQTSPDPRLSPSFRARPEALHS 290



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>CAH5B_HUMAN (Q9Y2D0) Carbonic anhydrase 5B, mitochondrial precursor (EC|
           4.2.1.1) (Carbonic anhydrase VB) (Carbonate dehydratase
           VB) (CA-VB)
          Length = 317

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 75  SLLNAVFRRAFTSAGLRPSSVAVDAETTLHFWAHXXXXXXXXXDGDDK 218
           S +N  +R +    GL+P +++ D  T LH W +         D  DK
Sbjct: 65  SPINIRWRDSVYDPGLKPLTISYDPATCLHVWNNGYSFLVEFEDSTDK 112



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>CAH5B_RAT (Q66HG6) Carbonic anhydrase 5B, mitochondrial precursor (EC|
           4.2.1.1) (Carbonic anhydrase VB) (Carbonate dehydratase
           VB) (CA-VB)
          Length = 317

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 75  SLLNAVFRRAFTSAGLRPSSVAVDAETTLHFWAHXXXXXXXXXDGDDK 218
           S +N  +R +    GL+P +++ D  T LH W +         D  DK
Sbjct: 65  SPINIRWRDSVYDPGLKPLTISYDPATCLHIWNNGYSFLVEFEDTTDK 112


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,549,436
Number of Sequences: 219361
Number of extensions: 526796
Number of successful extensions: 2095
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2093
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4258037034
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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