ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart26b04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 274 bits (138), Expect = 3e-70 Identities = 204/226 (90%) Strand = Plus / Minus Query: 206 gccgcggtggggatcagcctcgggatcgtgtttcccgccgagcccgcagaccggcccttc 265 ||||||| ||| ||||||||||||||||||| |||||||||||||| || ||||||||| Sbjct: 9892456 gccgcggccggggtcagcctcgggatcgtgttccccgccgagcccgccgagcggcccttc 9892397 Query: 266 tgccgggagcgccgcatgctggaggcgctcccggcggctgctagcagccgggaggaggag 325 ||||| |||||||||||||||||||| ||||| || || || |||||| ||||||||||| Sbjct: 9892396 tgccgcgagcgccgcatgctggaggccctccccgccgcggccagcagcagggaggaggag 9892337 Query: 326 cctgaggcgtatcggtaccgaggcggggcgttctacatgaccacggccgaggccgccgac 385 || |||||||| |||||||| |||||||| |||||||||||||| ||||||||||||||| Sbjct: 9892336 cccgaggcgtaccggtaccgcggcggggccttctacatgaccaccgccgaggccgccgac 9892277 Query: 386 ttctactggatggtcgtcttggtgccatccgccgtcctcttcgccg 431 |||||||||||||||||||| || || |||||| |||||||||||| Sbjct: 9892276 ttctactggatggtcgtcttcgtcccgtccgccctcctcttcgccg 9892231 Score = 117 bits (59), Expect = 5e-23 Identities = 83/91 (91%) Strand = Plus / Minus Query: 74 gcgacggcgctgctcggcgacgctctgcggcaggccatcatgccgcggggtgcgtacgag 133 |||| ||||||||| |||||||| ||||||||||| ||||||||||| | ||||||| | Sbjct: 9892603 gcgatggcgctgctgggcgacgcgctgcggcaggcgttcatgccgcggcgggcgtacgcg 9892544 Query: 134 gcgctgcgggacgaggagcgcgcgctgccgc 164 ||||||||||||||||||||||||||||||| Sbjct: 9892543 gcgctgcgggacgaggagcgcgcgctgccgc 9892513 Score = 99.6 bits (50), Expect = 1e-17 Identities = 77/86 (89%) Strand = Plus / Minus Query: 452 gcaggaatatctgttgcatatgctgctccaaggaggcatccgttcatttgcattgtcgag 511 ||||| |||||||||||||||||||||||||| || ||||| || ||||| | |||||| Sbjct: 9890252 gcaggcatatctgttgcatatgctgctccaagaagacatccattgatttgtgtcgtcgag 9890193 Query: 512 aataacttctgtgcttctagaagagg 537 ||||||||||||||||||| |||||| Sbjct: 9890192 aataacttctgtgcttctaaaagagg 9890167 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 543 tgcgttgcctggctatagtgaatgcagttttctccctcatatttggtctcatggcaat 600 |||||||| |||||||| | ||||||||||| | |||||||||||||||||||||| Sbjct: 9888597 tgcgttgcttggctatactaaatgcagtttttgctgtcatatttggtctcatggcaat 9888540
>dbj|AP005007.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0521F09 Length = 164823 Score = 274 bits (138), Expect = 3e-70 Identities = 204/226 (90%) Strand = Plus / Minus Query: 206 gccgcggtggggatcagcctcgggatcgtgtttcccgccgagcccgcagaccggcccttc 265 ||||||| ||| ||||||||||||||||||| |||||||||||||| || ||||||||| Sbjct: 73418 gccgcggccggggtcagcctcgggatcgtgttccccgccgagcccgccgagcggcccttc 73359 Query: 266 tgccgggagcgccgcatgctggaggcgctcccggcggctgctagcagccgggaggaggag 325 ||||| |||||||||||||||||||| ||||| || || || |||||| ||||||||||| Sbjct: 73358 tgccgcgagcgccgcatgctggaggccctccccgccgcggccagcagcagggaggaggag 73299 Query: 326 cctgaggcgtatcggtaccgaggcggggcgttctacatgaccacggccgaggccgccgac 385 || |||||||| |||||||| |||||||| |||||||||||||| ||||||||||||||| Sbjct: 73298 cccgaggcgtaccggtaccgcggcggggccttctacatgaccaccgccgaggccgccgac 73239 Query: 386 ttctactggatggtcgtcttggtgccatccgccgtcctcttcgccg 431 |||||||||||||||||||| || || |||||| |||||||||||| Sbjct: 73238 ttctactggatggtcgtcttcgtcccgtccgccctcctcttcgccg 73193 Score = 117 bits (59), Expect = 5e-23 Identities = 83/91 (91%) Strand = Plus / Minus Query: 74 gcgacggcgctgctcggcgacgctctgcggcaggccatcatgccgcggggtgcgtacgag 133 |||| ||||||||| |||||||| ||||||||||| ||||||||||| | ||||||| | Sbjct: 73565 gcgatggcgctgctgggcgacgcgctgcggcaggcgttcatgccgcggcgggcgtacgcg 73506 Query: 134 gcgctgcgggacgaggagcgcgcgctgccgc 164 ||||||||||||||||||||||||||||||| Sbjct: 73505 gcgctgcgggacgaggagcgcgcgctgccgc 73475 Score = 99.6 bits (50), Expect = 1e-17 Identities = 77/86 (89%) Strand = Plus / Minus Query: 452 gcaggaatatctgttgcatatgctgctccaaggaggcatccgttcatttgcattgtcgag 511 ||||| |||||||||||||||||||||||||| || ||||| || ||||| | |||||| Sbjct: 71214 gcaggcatatctgttgcatatgctgctccaagaagacatccattgatttgtgtcgtcgag 71155 Query: 512 aataacttctgtgcttctagaagagg 537 ||||||||||||||||||| |||||| Sbjct: 71154 aataacttctgtgcttctaaaagagg 71129 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 543 tgcgttgcctggctatagtgaatgcagttttctccctcatatttggtctcatggcaat 600 |||||||| |||||||| | ||||||||||| | |||||||||||||||||||||| Sbjct: 69559 tgcgttgcttggctatactaaatgcagtttttgctgtcatatttggtctcatggcaat 69502
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 134 gcgctgcgggacgaggagcgcg 155 |||||||||||||||||||||| Sbjct: 4817732 gcgctgcgggacgaggagcgcg 4817711 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 213 tggggatcagcctcgggatcg 233 ||||||||||||||||||||| Sbjct: 1772555 tggggatcagcctcgggatcg 1772535
>gb|CP000081.1| Leishmania major chromosome 35, complete sequence Length = 2090491 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 187 cgtcgccttcgctaccgttgccgcg 211 |||||||||||||||||| |||||| Sbjct: 1462144 cgtcgccttcgctaccgtcgccgcg 1462168
>ref|XM_838372.1| Leishmania major strain Friedlin hypothetical protein (LMJ_1289) partial mRNA Length = 1164 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 187 cgtcgccttcgctaccgttgccgcg 211 |||||||||||||||||| |||||| Sbjct: 919 cgtcgccttcgctaccgtcgccgcg 895
>gb|AF518560.1| Azoarcus sp. BH72 RnfA-like protein (rnfA) gene, partial cds; and nifLA operon, complete sequence Length = 3700 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 168 cagcggcggctgccgcctgcg 188 ||||||||||||||||||||| Sbjct: 1959 cagcggcggctgccgcctgcg 1979
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 72 ccgcgacggcgctgctcggcgacgc 96 ||||||||||||||| ||||||||| Sbjct: 3012815 ccgcgacggcgctgcccggcgacgc 3012791
>emb|X82071.1|PAHEMA Pseudomonas aeruginosa hemA gene, ORF2, ORF3, prf1 gene and hemM gene, strain PAO1 Length = 4781 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 76 gacggcgctgctcggcgacgc 96 ||||||||||||||||||||| Sbjct: 4550 gacggcgctgctcggcgacgc 4570
>gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence Length = 642517 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 174 cggctgccgcctgcgtcgcct 194 ||||||||||||||||||||| Sbjct: 42359 cggctgccgcctgcgtcgcct 42379
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome Length = 2628784 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 cggcaggccatcatgccgcgg 121 ||||||||||||||||||||| Sbjct: 510083 cggcaggccatcatgccgcgg 510103
>gb|AF172851.1|AF172851 Chromobacterium violaceum violacein biosynthetic gene cluster, complete sequence Length = 10094 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 145 cgaggagcgcgcgctgccgct 165 ||||||||||||||||||||| Sbjct: 8513 cgaggagcgcgcgctgccgct 8533
>gb|AE004880.1| Pseudomonas aeruginosa PAO1, section 441 of 529 of the complete genome Length = 13518 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 76 gacggcgctgctcggcgacgc 96 ||||||||||||||||||||| Sbjct: 7592 gacggcgctgctcggcgacgc 7572
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 145 cgaggagcgcgcgctgccgct 165 ||||||||||||||||||||| Sbjct: 3559744 cgaggagcgcgcgctgccgct 3559724
>dbj|AB032799.1| Chromobacterium violaceum violacein biosynthetic gene cluster (vio A, vio B, vio C, vio D), complete cds Length = 9077 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 145 cgaggagcgcgcgctgccgct 165 ||||||||||||||||||||| Sbjct: 7096 cgaggagcgcgcgctgccgct 7116
>gb|AC148086.6| Mus musculus chromosome 17, clone RP24-147C6, complete sequence Length = 125116 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 463 tgttgcatatgctgctccaa 482 |||||||||||||||||||| Sbjct: 68734 tgttgcatatgctgctccaa 68753
>gb|BC046513.1| Mus musculus fatty acid synthase, mRNA (cDNA clone MGC:25871 IMAGE:4196969), complete cds Length = 8390 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 cgggaggaggagcctgaggc 333 |||||||||||||||||||| Sbjct: 5629 cgggaggaggagcctgaggc 5648
>ref|NM_007988.3| Mus musculus fatty acid synthase (Fasn), mRNA Length = 9938 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 cgggaggaggagcctgaggc 333 |||||||||||||||||||| Sbjct: 6075 cgggaggaggagcctgaggc 6094
>ref|XM_130233.7| PREDICTED: Mus musculus membrane associated DNA binding protein, transcript variant 1 (Mnab), mRNA Length = 10122 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 ccgcgacggcgctgctcggcgacg 95 |||||||||||| ||||||||||| Sbjct: 93 ccgcgacggcgcggctcggcgacg 70
>ref|XM_994225.1| PREDICTED: Mus musculus membrane associated DNA binding protein, transcript variant 4 (Mnab), mRNA Length = 10122 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 ccgcgacggcgctgctcggcgacg 95 |||||||||||| ||||||||||| Sbjct: 93 ccgcgacggcgcggctcggcgacg 70
>ref|XM_994547.1| PREDICTED: Mus musculus hypothetical protein LOC676983 (LOC676983), mRNA Length = 711 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 ccgcgacggcgctgctcggcgacg 95 |||||||||||| ||||||||||| Sbjct: 513 ccgcgacggcgcggctcggcgacg 536
>ref|XM_925271.2| PREDICTED: Mus musculus membrane associated DNA binding protein, transcript variant 18 (Mnab), mRNA Length = 10122 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 ccgcgacggcgctgctcggcgacg 95 |||||||||||| ||||||||||| Sbjct: 93 ccgcgacggcgcggctcggcgacg 70
>gb|AC132319.3| Mus musculus BAC clone RP24-258I12 from chromosome 19, complete sequence Length = 193053 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 584 tttggtctcatggcaatagtcttt 607 ||||||||| |||||||||||||| Sbjct: 97852 tttggtctcttggcaatagtcttt 97829
>ref|XM_859016.1| PREDICTED: Canis familiaris similar to membrane associated DNA binding protein, transcript variant 6 (LOC491344), mRNA Length = 4005 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 ccgcgacggcgctgctcggcgacg 95 |||||||||||| ||||||||||| Sbjct: 136 ccgcgacggcgcggctcggcgacg 113
>ref|XM_858991.1| PREDICTED: Canis familiaris similar to membrane associated DNA binding protein, transcript variant 5 (LOC491344), mRNA Length = 3873 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 ccgcgacggcgctgctcggcgacg 95 |||||||||||| ||||||||||| Sbjct: 187 ccgcgacggcgcggctcggcgacg 164
>ref|XM_858975.1| PREDICTED: Canis familiaris similar to membrane associated DNA binding protein, transcript variant 4 (LOC491344), mRNA Length = 1004 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 ccgcgacggcgctgctcggcgacg 95 |||||||||||| ||||||||||| Sbjct: 187 ccgcgacggcgcggctcggcgacg 164
>ref|XM_858958.1| PREDICTED: Canis familiaris similar to membrane associated DNA binding protein, transcript variant 3 (LOC491344), mRNA Length = 1616 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 ccgcgacggcgctgctcggcgacg 95 |||||||||||| ||||||||||| Sbjct: 136 ccgcgacggcgcggctcggcgacg 113
>ref|XM_846476.1| PREDICTED: Canis familiaris similar to membrane associated DNA binding protein, transcript variant 2 (LOC491344), mRNA Length = 4358 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 ccgcgacggcgctgctcggcgacg 95 |||||||||||| ||||||||||| Sbjct: 187 ccgcgacggcgcggctcggcgacg 164
>gb|BC059850.1| Mus musculus fatty acid synthase, mRNA (cDNA clone IMAGE:5699125), partial cds Length = 3411 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 cgggaggaggagcctgaggc 333 |||||||||||||||||||| Sbjct: 607 cgggaggaggagcctgaggc 626
>gb|AC018931.9| Homo sapiens chromosome 18, clone RP11-418K9, complete sequence Length = 185117 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 gggaggaggagcctgaggcg 334 |||||||||||||||||||| Sbjct: 128543 gggaggaggagcctgaggcg 128562
>dbj|AK147214.1| Mus musculus 15 days embryo brain cDNA, RIKEN full-length enriched library, clone:M421005N09 product:fatty acid synthase, full insert sequence Length = 8515 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 cgggaggaggagcctgaggc 333 |||||||||||||||||||| Sbjct: 5771 cgggaggaggagcctgaggc 5790
>dbj|AK147694.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1108M11 product:fatty acid synthase, full insert sequence Length = 8583 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 cgggaggaggagcctgaggc 333 |||||||||||||||||||| Sbjct: 5839 cgggaggaggagcctgaggc 5858
>dbj|AK171499.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F730222H24 product:fatty acid synthase, full insert sequence Length = 6696 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 cgggaggaggagcctgaggc 333 |||||||||||||||||||| Sbjct: 5707 cgggaggaggagcctgaggc 5726
>gb|BC010310.1| Mus musculus fatty acid synthase, mRNA (cDNA clone IMAGE:3594443), partial cds Length = 2821 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 cgggaggaggagcctgaggc 333 |||||||||||||||||||| Sbjct: 62 cgggaggaggagcctgaggc 81
>dbj|AK080374.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630082H08 product:fatty acid synthase, full insert sequence Length = 4665 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 cgggaggaggagcctgaggc 333 |||||||||||||||||||| Sbjct: 972 cgggaggaggagcctgaggc 991
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 gaggagcgcgcgctgccgct 165 |||||||||||||||||||| Sbjct: 72214 gaggagcgcgcgctgccgct 72233
>dbj|AK053071.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930043C02 product:MEMBRANE-ASSOCIATED NUCLEIC ACID BINDING PROTEIN (FRAGMENT) homolog [Homo sapiens], full insert sequence Length = 3959 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 ccgcgacggcgctgctcggcgacg 95 |||||||||||| ||||||||||| Sbjct: 94 ccgcgacggcgcggctcggcgacg 71
>gb|AF127033.1|AF127033 Mus musculus fatty acid synthase mRNA, complete cds Length = 8363 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 cgggaggaggagcctgaggc 333 |||||||||||||||||||| Sbjct: 5592 cgggaggaggagcctgaggc 5611
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 aggcgctgcgggacgaggag 151 |||||||||||||||||||| Sbjct: 3537379 aggcgctgcgggacgaggag 3537398
>ref|XM_577106.1| PREDICTED: Rattus norvegicus similar to hypothetical protein MGC18079 (LOC501703), mRNA Length = 1857 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 549 gcctggctatagtgaatgcagttt 572 ||||||||| |||||||||||||| Sbjct: 752 gcctggctaaagtgaatgcagttt 729
>ref|XM_231249.3| PREDICTED: Rattus norvegicus membrane associated DNA binding protein (predicted) (Mnab_predicted), mRNA Length = 3958 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 ccgcgacggcgctgctcggcgacg 95 |||||||||||| ||||||||||| Sbjct: 93 ccgcgacggcgcggctcggcgacg 70
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 cggccgaggccgccgacttc 388 |||||||||||||||||||| Sbjct: 811420 cggccgaggccgccgacttc 811401
>gb|AF098866.1|MUSP3VPR1 Mus sp. 129SV V3/V1b vasopressin receptor gene, exon 1 Length = 6074 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 gagaataacttctgtgcttc 528 |||||||||||||||||||| Sbjct: 6014 gagaataacttctgtgcttc 5995
>emb|AL953890.7| Mouse DNA sequence from clone RP23-321B3 on chromosome 2, complete sequence Length = 157722 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 ccgcgacggcgctgctcggcgacg 95 |||||||||||| ||||||||||| Sbjct: 8145 ccgcgacggcgcggctcggcgacg 8168
>emb|AL663090.15| Mouse DNA sequence from clone RP23-99M13 on chromosome 11, complete sequence Length = 165824 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 cgggaggaggagcctgaggc 333 |||||||||||||||||||| Sbjct: 56839 cgggaggaggagcctgaggc 56820
>gb|AC159289.3| Mus musculus BAC clone RP23-290F13 from chromosome 17, complete sequence Length = 200848 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 463 tgttgcatatgctgctccaa 482 |||||||||||||||||||| Sbjct: 89640 tgttgcatatgctgctccaa 89621
>dbj|AB070940.1| Streptomyces avermitilis oligomycin biosynthetic gene cluster Length = 104326 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 aggcgctgcgggacgaggag 151 |||||||||||||||||||| Sbjct: 100426 aggcgctgcgggacgaggag 100407 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,982,456 Number of Sequences: 3902068 Number of extensions: 3982456 Number of successful extensions: 81701 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80716 Number of HSP's gapped (non-prelim): 985 length of query: 621 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 598 effective length of database: 17,143,297,704 effective search space: 10251692026992 effective search space used: 10251692026992 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
