ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart26b02 |
|---|---|
| Clone Library Name | barley_pub |
>PALI_MAGGR (Q51MB1) pH-response regulator protein palI/RIM9| Length = 736 Score = 32.7 bits (73), Expect = 0.75 Identities = 30/88 (34%), Positives = 38/88 (43%), Gaps = 3/88 (3%) Frame = +3 Query: 219 FRGRARLRLGHGWGAAAPVPEAMDGGG*DRDPTRVRRVYGAAGHGVRVPPVR--HGTLLR 392 +RGR G G P P + G G P R G G G PP R +G +R Sbjct: 320 YRGRGYGPPGRGGYGYGPPPGSRGGYG---PPGRGGYGPGPNGRGGYGPPPRGGYGPPMR 376 Query: 393 GDAPPPPARFLQEPARREA-SPP*AQVP 473 G APPP ++ + + EA PP Q P Sbjct: 377 GRAPPPGYQYDRRGSPAEAYGPPPGQGP 404
>ODP2_LEIXX (Q6ABX9) Dihydrolipoyllysine-residue acetyltransferase component of| pyruvate dehydrogenase complex (EC 2.3.1.12) (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) Length = 452 Score = 30.8 bits (68), Expect = 2.9 Identities = 16/41 (39%), Positives = 19/41 (46%) Frame = +3 Query: 333 YGAAGHGVRVPPVRHGTLLRGDAPPPPARFLQEPARREASP 455 YG+AGHG V H A PPA EP R ++P Sbjct: 120 YGSAGHGTSRRRVTHPGAAARPAAFPPAESAAEPGRAPSTP 160
>YWIS_WHEAT (P14723) Hypothetical 16 kDa protein in middle repetitive insertion| sequence WIS1 Length = 151 Score = 30.8 bits (68), Expect = 2.9 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Frame = +3 Query: 366 PVRHGTLLRGDAPPPPARFLQEPARREASPP*AQVP*LCRAPPLLRQHFLLSL-PSRAGR 542 PV H L D PPPP P+ P + P L P + HF + + G Sbjct: 51 PVPHHCLRCCDPPPPPPPPTPSPSISLLPFPFSDGPRLALNPVIPDDHFSSEMDTTTGGA 110 Query: 543 LRDRSQHL 566 LR R+QHL Sbjct: 111 LRCRNQHL 118
>SOX9_PIG (O18896) Transcription factor SOX-9| Length = 509 Score = 30.8 bits (68), Expect = 2.9 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 6/86 (6%) Frame = +3 Query: 333 YGAAGHGVRVPPVRHGTLLRGDAPPPPARFLQEPARREASP--P*AQVP*LCRAPPLLRQ 506 YG + H + + APPPP Q+P +P P A +P +APP Q Sbjct: 319 YGISSTAATPAGAGHVWMSKQQAPPPPPHPPQQPPPVPQAPAQPQAALPQQPQAPPQQPQ 378 Query: 507 -HFLLSLPSRAG---RLRDRSQHLAP 572 H L +L S G R +++ L+P Sbjct: 379 AHTLTTLSSEPGQSQRTHIKTEQLSP 404
>K0776_MOUSE (Q8CCJ3) Protein KIAA0776| Length = 793 Score = 30.0 bits (66), Expect = 4.9 Identities = 16/33 (48%), Positives = 22/33 (66%) Frame = +1 Query: 388 YEEMRRRLQLDFSKSQLAEKLRRLKRKYRNCVE 486 +EE+RR L DF ++Q AE +RL RNC+E Sbjct: 5 WEEIRR-LAADFQRAQFAESTQRLSE--RNCIE 34
>CPSF6_BRARE (Q6NWC6) Cleavage and polyadenylation specificity factor 6| Length = 545 Score = 26.9 bits (58), Expect(2) = 6.3 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = +3 Query: 351 GVRVPPVRHGTLLRGDAPPPPARF 422 G +PP G RGD PPPP F Sbjct: 256 GQGLPPPLGGPPNRGDRPPPPVLF 279 Score = 21.2 bits (43), Expect(2) = 6.3 Identities = 12/31 (38%), Positives = 13/31 (41%) Frame = +3 Query: 402 PPPPARFLQEPARREASPP*AQVP*LCRAPP 494 PPPP + P PP P L APP Sbjct: 306 PPPPQQGPPPPGPFPPRPPGPLGPPLGLAPP 336
>K0776_HUMAN (O94874) Protein KIAA0776| Length = 794 Score = 29.6 bits (65), Expect = 6.4 Identities = 16/33 (48%), Positives = 22/33 (66%) Frame = +1 Query: 388 YEEMRRRLQLDFSKSQLAEKLRRLKRKYRNCVE 486 +EE+RR L DF ++Q AE +RL RNC+E Sbjct: 5 WEEIRR-LAADFQRAQFAEATQRLSE--RNCIE 34
>UACA_CANFA (Q9GL21) Uveal autoantigen with coiled-coil domains and ankyrin| repeats protein Length = 1415 Score = 29.3 bits (64), Expect = 8.3 Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 13/81 (16%) Frame = +1 Query: 361 SHQYDTEPFYEEMRRRLQLDFSK------------SQLAEKLRRLKRKYRN-CVERLRCS 501 S DT+ +++ R +D SK S L EKL L RKY C E LR Sbjct: 1205 SEVQDTKQALQKLETREVVDLSKYKATKSDLETQISNLNEKLANLNRKYEEACEEVLRAQ 1264 Query: 502 GNTFSFRSPHEQAVFEIARNI 564 S + E F I + I Sbjct: 1265 RKQLSAKDEKELLHFSIEQEI 1285
>WIRE_MOUSE (Q6PEV3) WIP-related protein (WASP-interacting protein-related| protein) Length = 440 Score = 29.3 bits (64), Expect = 8.3 Identities = 18/47 (38%), Positives = 22/47 (46%) Frame = +3 Query: 363 PPVRHGTLLRGDAPPPPARFLQEPARREASPP*AQVP*LCRAPPLLR 503 PP L + PPPPAR EP R A+PP PP++R Sbjct: 298 PPTSATPSLLSNRPPPPAR---EPPSRGAAPP--------PPPPMIR 333
>K0776_CHICK (Q5ZMG1) Protein KIAA0776 homolog| Length = 789 Score = 29.3 bits (64), Expect = 8.3 Identities = 16/33 (48%), Positives = 21/33 (63%) Frame = +1 Query: 388 YEEMRRRLQLDFSKSQLAEKLRRLKRKYRNCVE 486 +EE+RR L DF ++Q AE RL RNC+E Sbjct: 5 WEEIRR-LAADFQRAQFAEAAHRLSE--RNCIE 34
>MAD1_ASHGO (Q754Z1) Spindle assembly checkpoint component MAD1 (Mitotic arrest| deficient protein 1) Length = 659 Score = 29.3 bits (64), Expect = 8.3 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 2/83 (2%) Frame = +1 Query: 253 VGERRPLFQRLWTEEDEIVILRAFAEFTAQRGTAFASHQYDTEPFYE--EMRRRLQLDFS 426 +GE R L +RL EDE+ L+A A R Y E E +RR LQ Sbjct: 166 MGELRALAERLAEREDEVAGLKAQRVLQAHR-------SYSAEEVEELGVLRRTLQ---E 215 Query: 427 KSQLAEKLRRLKRKYRNCVERLR 495 + L+++L R + N ++RLR Sbjct: 216 QLALSKELERANLEQANELKRLR 238 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,003,555 Number of Sequences: 219361 Number of extensions: 1202706 Number of successful extensions: 4984 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4284 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4928 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4815021120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
