Clone Information

BLAST Search Result

Clone Name	bart26a07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	BBC1_YEAST (P47068) Myosin tail region-interacting protein MTI1 ...	37	0.047
2	NIFZ_FRAAL (P46040) Protein nifZ	34	0.23
3	PIV6_ADE40 (P48309) Minor capsid protein 6 precursor (Minor caps...	34	0.30
4	XRCC1_HUMAN (P18887) DNA-repair protein XRCC1 (X-ray repair cros...	34	0.30
5	PRAF3_RAT (Q9ES40) PRA1 family protein 3 (ARL-6-interacting prot...	34	0.30
6	PRAF3_MOUSE (Q8R5J9) PRA1 family protein 3 (ARL-6-interacting pr...	34	0.30
7	PRAF3_HUMAN (O75915) PRA1 family protein 3 (ARL-6-interacting pr...	34	0.30
8	TGIF_HUMAN (Q15583) 5'-TG-3'-interacting factor (Homeobox protei...	33	0.52
9	WASF4_HUMAN (Q8IV90) Wiskott-Aldrich syndrome protein family mem...	33	0.52
10	GAG_FSVGA (P03337) Gag polyprotein [Contains: Core protein p15; ...	33	0.67
11	GAR1_ASHGO (Q757V8) H/ACA ribonucleoprotein complex subunit 1 (s...	32	0.88
12	VG48_ICHV1 (Q00112) Hypothetical gene 48 protein	32	1.1
13	DPOL_ADE40 (P48311) DNA polymerase (EC 2.7.7.7)	32	1.1
14	GAG_FSVMD (P03340) Gag polyprotein [Contains: Core protein p15; ...	32	1.5
15	GAG_FSVST (P03338) Gag polyprotein [Contains: Core protein p15; ...	31	2.0
16	GAG_FLV (P10262) Gag polyprotein [Contains: Core protein p15; Co...	31	2.0
17	GAR1_CANGA (Q6FSB0) H/ACA ribonucleoprotein complex subunit 1 (s...	31	2.0
18	YT35_STRFR (P20186) Hypothetical 35.5 kDa protein in transposon ...	31	2.0
19	FATB_CUPHO (Q39513) Myristoyl-acyl carrier protein thioesterase,...	31	2.6
20	WASF2_MOUSE (Q8BH43) Wiskott-Aldrich syndrome protein family mem...	31	2.6
21	SMCA4_HUMAN (P51532) Probable global transcription activator SNF...	30	3.3
22	SEM6B_HUMAN (Q9H3T3) Semaphorin-6B precursor (Semaphorin Z) (Sem...	30	3.3
23	PCLO_CHICK (Q9PU36) Protein piccolo (Aczonin) (Fragment)	30	4.4
24	CHSA_EMENI (P30584) Chitin synthase A (EC 2.4.1.16) (Chitin-UDP ...	30	4.4
25	ABI3_MOUSE (Q8BYZ1) ABI gene family member 3 (New molecule inclu...	30	4.4
26	BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-assoc...	30	4.4
27	RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1	30	4.4
28	RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1	30	4.4
29	RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1	30	4.4
30	RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1	30	4.4
31	RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain...	30	4.4
32	WASF2_HUMAN (Q9Y6W5) Wiskott-Aldrich syndrome protein family mem...	30	4.4
33	SEM6B_RAT (O70141) Semaphorin-6B precursor (Semaphorin Z) (Sema Z)	30	4.4
34	IF2_STRAW (Q82K53) Translation initiation factor IF-2	30	5.7
35	CYC_CHLRE (P15451) Cytochrome c	30	5.7
36	BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associa...	30	5.7
37	RCOR2_HUMAN (Q8IZ40) REST corepressor 2	30	5.7
38	ATL3F_ARATH (Q8L9T5) RING-H2 finger protein ATL3F (RING-H2 finge...	30	5.7
39	CD2L7_HUMAN (Q9NYV4) Cell division cycle 2-related protein kinas...	30	5.7
40	HEMH_CHICK (O42479) Ferrochelatase, mitochondrial precursor (EC ...	30	5.7
41	ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 prot...	30	5.7
42	NFIB_CHICK (P17924) Nuclear factor 1 B-type (Nuclear factor 1/B)...	30	5.7
43	CABL2_HUMAN (Q9BTV7) CDK5 and ABL1 enzyme substrate 2 (Interacto...	29	7.5
44	BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-assoc...	29	7.5
45	GFC1_HUMAN (P63117) HERV-F(c)1_Xq21.33 provirus ancestral Gag po...	29	7.5
46	Y020_NPVAC (P41425) Hypothetical 8.0 kDa protein in EGT-IAP1 int...	29	7.5
47	NCOA6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified i...	29	7.5
48	BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-assoc...	29	7.5
49	NCOA6_MOUSE (Q9JL19) Nuclear receptor coactivator 6 (Amplified i...	29	7.5
50	SH22A_MOUSE (Q9QXK9) SH2 domain protein 2A (Lck-associated adapt...	29	7.5
51	MYO15_MOUSE (Q9QZZ4) Myosin-15 (Myosin XV) (Unconventional myosi...	29	7.5
52	TGIF_PANTR (Q5IS58) 5'-TG-3'-interacting factor (Homeobox protei...	29	9.7
53	PYRF_THEAC (O74110) Orotidine 5'-phosphate decarboxylase (EC 4.1...	29	9.7
54	COIA1_HUMAN (P39060) Collagen alpha-1(XVIII) chain precursor [Co...	29	9.7
55	VASP_CANFA (P50551) Vasodilator-stimulated phosphoprotein (VASP)	29	9.7
56	GAR1_YEAST (P28007) H/ACA ribonucleoprotein complex subunit 1 (s...	29	9.7
57	USH_DROME (Q9VPQ6) Zinc-finger protein ush (Protein U-shaped)	29	9.7
58	DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-re...	29	9.7
59	104K_THEAN (Q4U9M9) 104 kDa microneme-rhoptry antigen precursor ...	29	9.7

>BBC1_YEAST (P47068) Myosin tail region-interacting protein MTI1 (BBC1 protein)|
          Length = 1157

 Score = 36.6 bits (83), Expect = 0.047
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +3

Query: 18  PLLSADTASFLPKIPKSKPRKLSPARPNNPPIPAESRRPPALS 146
           P+ SA +    P +P + P   +P+ P  PP+P  S  PPALS
Sbjct: 702 PVPSAPSVPSAPPVPPAPPALSAPSVPPVPPVPPVSSAPPALS 744

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>NIFZ_FRAAL (P46040) Protein nifZ|
          Length = 192

 Score = 34.3 bits (77), Expect = 0.23
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 27  SADTASFLPKIPKSKPRKLSPARPNNPPIPAESRRPPALSLGFGSPASR 173
           +AD    +P  P    +  +PA+P  P  PA   +P   ++G G+P ++
Sbjct: 140 AADAEPAVPSTPAEPAKAATPAKPATPAKPAPPAKPAGKTVGAGTPGAK 188

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>PIV6_ADE40 (P48309) Minor capsid protein 6 precursor (Minor capsid protein VI)|
           [Contains: Protease cofactor]
          Length = 267

 Score = 33.9 bits (76), Expect = 0.30
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
 Frame = +3

Query: 63  KSKP--RKLSPARPNNPPIPAES-----RRPPALSLGFGSPASRGRGADW 191
           +SKP   +L P  P  PP+PA +      RP A ++   +PA R RGA+W
Sbjct: 197 ESKPVTLELPPPVPTVPPMPAPTLGTAVSRPTAPTVAVATPARRPRGANW 246

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>XRCC1_HUMAN (P18887) DNA-repair protein XRCC1 (X-ray repair cross-complementing|
           protein 1)
          Length = 633

 Score = 33.9 bits (76), Expect = 0.30
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = +3

Query: 54  KIPKSKPRKLSPARPNNPPIPAESRRP-----PALSLGFGSPASRGRGAD 188
           K P   P +LSP+ P  P +PA +R P     PA + G  +   RG G +
Sbjct: 256 KTPSKPPAQLSPSVPKRPKLPAPTRTPATAPVPARAQGAVTGKPRGEGTE 305

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>PRAF3_RAT (Q9ES40) PRA1 family protein 3 (ARL-6-interacting protein 5)|
           (ADP-ribosylation-like factor 6-interacting protein 5)
           (Aip-5) (Glutamate transporter EAAC1-interacting
           protein) (GTRAP3-18) (Prenylated Rab acceptor protein 2)
           (Protein JWa)
          Length = 188

 Score = 33.9 bits (76), Expect = 0.30
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = +1

Query: 274 PPRPVPEFF---SRFTVP--RSYSKWTSRLKCNLYYYRTNY 381
           P R   +FF    RF  P  R  SKW +R+  NL YY+TNY
Sbjct: 7   PLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNY 47

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>PRAF3_MOUSE (Q8R5J9) PRA1 family protein 3 (ARL-6-interacting protein 5)|
           (ADP-ribosylation-like factor 6-interacting protein 5)
           (Aip-5) (Glutamate transporter EAAC1-interacting
           protein) (GTRAP3-18) (Prenylated Rab acceptor protein 2)
           (Protein JWa) (Addic
          Length = 188

 Score = 33.9 bits (76), Expect = 0.30
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = +1

Query: 274 PPRPVPEFF---SRFTVP--RSYSKWTSRLKCNLYYYRTNY 381
           P R   +FF    RF  P  R  SKW +R+  NL YY+TNY
Sbjct: 7   PLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNY 47

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>PRAF3_HUMAN (O75915) PRA1 family protein 3 (ARL-6-interacting protein 5)|
           (ADP-ribosylation-like factor 6-interacting protein 5)
           (Aip-5) (Glutamate transporter EAAC1-interacting
           protein) (GTRAP3-18) (Prenylated Rab acceptor protein 2)
           (Protein JWa) (Derma
          Length = 188

 Score = 33.9 bits (76), Expect = 0.30
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = +1

Query: 274 PPRPVPEFF---SRFTVP--RSYSKWTSRLKCNLYYYRTNY 381
           P R   +FF    RF  P  R  SKW +R+  NL YY+TNY
Sbjct: 7   PLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNY 47

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>TGIF_HUMAN (Q15583) 5'-TG-3'-interacting factor (Homeobox protein TGIF)|
          Length = 401

 Score = 33.1 bits (74), Expect = 0.52
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +3

Query: 12  SSPLLSADTASFLPKIPKSK---PRKLSPARPNNPPIPAESRRPPALSLGFGSPASRGRG 182
           +SP LS  T ++LP  P S    P  L  +    PP PA   +P ALS   G+ A   R 
Sbjct: 48  ASPRLSRGTLAYLPPAPWSSLATPSALLGSSCAPPPPPARCPQPRALSQELGTKAGPRRP 107

Query: 183 ADW 191
             W
Sbjct: 108 HRW 110

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>WASF4_HUMAN (Q8IV90) Wiskott-Aldrich syndrome protein family member 4|
           (WASP-family protein member 4)
          Length = 625

 Score = 33.1 bits (74), Expect = 0.52
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +3

Query: 60  PKSKPRKLSPARPNNPPIPAESRRPPALSLGFGSPAS 170
           P SKP    P  P  PP P     PP   +GFGSP +
Sbjct: 438 PSSKPGFAPPPAPPPPPPPMIGIPPPPPPIGFGSPGT 474

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>GAG_FSVGA (P03337) Gag polyprotein [Contains: Core protein p15; Core protein|
           p12; Core protein p30]
          Length = 425

 Score = 32.7 bits (73), Expect = 0.67
 Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +3

Query: 15  SPLLSAD-TASFLPKIPKSKPRK--LSPARPNNPPIPAESRRPPALSLGFGSPASRGR 179
           SP  SA  T+S  P +PKS P K  + P  P++P I   +  PP    G G P S  R
Sbjct: 192 SPQPSAPLTSSLYPVLPKSDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGPR 249

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>GAR1_ASHGO (Q757V8) H/ACA ribonucleoprotein complex subunit 1 (snoRNP protein|
           GAR1)
          Length = 212

 Score = 32.3 bits (72), Expect = 0.88
 Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -2

Query: 181 PRPRLAGEPKP-RERAGGRRLSAGMGGLFGRAG 86
           P+P++AG PKP R+RA G   + G GG  GR G
Sbjct: 125 PKPKVAGPPKPKRKRAAGG--APGRGGFGGRGG 155

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>VG48_ICHV1 (Q00112) Hypothetical gene 48 protein|
          Length = 278

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +3

Query: 60  PKSKPRKLSPARPNNPPIPAESRRPPAL---SLGFGSPASRGRGADW 191
           P  +PR +SP  P  P  P + ++ PAL   +L F +PA   RG DW
Sbjct: 43  PAEQPRAISP-EPVTPKKPKQPKKRPALKQPTLPFAAPAK--RGMDW 86

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>DPOL_ADE40 (P48311) DNA polymerase (EC 2.7.7.7)|
          Length = 1188

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +3

Query: 36  TASFLPKIPKSKPRKLSPARPNNPPIPAESRRPPALSLGFGSPASRGRG 182
           TA   P   ++  R+ + A P  PP    S RPPA +    +P SR RG
Sbjct: 32  TAGAAPTATRAPRRRAATASPGEPPSTTASGRPPAANNVSLTPNSRLRG 80

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>GAG_FSVMD (P03340) Gag polyprotein [Contains: Core protein p15; Core protein|
           p12; Core protein p30; Core protein p10]
          Length = 536

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +3

Query: 15  SPLLSAD-TASFLPKIPKSKPRK--LSPARPNNPPIPAESRRPPALSLGFGSPAS 170
           SP  SA  T+S  P +PK+ P K  + P  P++P I   +  PP    G G P S
Sbjct: 192 SPQPSAPPTSSLYPVLPKTNPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPS 246

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>GAG_FSVST (P03338) Gag polyprotein [Contains: Core protein p15; Core protein|
           p12; Core protein p30]
          Length = 371

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +3

Query: 15  SPLLSAD-TASFLPKIPKSKPRK--LSPARPNNPPIPAESRRPPALSLGFGSPASRGR 179
           SP  SA  T+S  P +PK  P K  + P  P++P I   +  PP    G G P S  R
Sbjct: 189 SPQPSAPLTSSLYPVVPKPDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGPR 246

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>GAG_FLV (P10262) Gag polyprotein [Contains: Core protein p15; Core protein|
           p12; Core protein p30; Core protein p10]
          Length = 580

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +3

Query: 15  SPLLSAD-TASFLPKIPKSKPRK--LSPARPNNPPIPAESRRPPALSLGFGSPASRGR 179
           SP  SA  T+S  P +PK  P K  + P  P++P I   +  PP    G G P S  R
Sbjct: 189 SPQPSAPLTSSLYPVVPKPDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGPR 246

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>GAR1_CANGA (Q6FSB0) H/ACA ribonucleoprotein complex subunit 1 (snoRNP protein|
           GAR1)
          Length = 222

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -2

Query: 181 PRPRLAGEPKPRERAGGRRLSAGMGGL---FGRAGESFLGF 68
           P+P++AG PKP+ +       AG GG    FG  G S  GF
Sbjct: 125 PKPKVAGPPKPKNKKKRSGAPAGRGGARGGFGGRGGSRGGF 165

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>YT35_STRFR (P20186) Hypothetical 35.5 kDa protein in transposon Tn4556|
          Length = 348

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +3

Query: 12  SSPLLSADTASFLPKIPK----SKPRKLSPARPNNPPIPAESRRPPALSLGFGSPAS 170
           SSP  +A  A    ++P+    S PR  S  RP  PPIPA +R PP  + G   PA+
Sbjct: 243 SSPQAAAPAAPSATRLPRRTTPSAPRPSS--RPARPPIPA-ARPPPRRTPGTPRPAA 296

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>FATB_CUPHO (Q39513) Myristoyl-acyl carrier protein thioesterase, chloroplast|
           precursor (EC 3.1.2.-) (16:0-acyl-carrier protein
           thioesterase) (16:0-ACP thioesterase)
           (Acyl-[acyl-carrier protein] hydrolase) (PATE)
          Length = 415

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = +3

Query: 18  PLLSADTASFLPKIPKSKPRKLSPARPNNPP-----IPAESRRPPALSLGFGSPASRGRG 182
           PL SADT+S   K+  +KP  LSP +P + P     + A +  PP ++   GSP     G
Sbjct: 12  PLPSADTSSRPGKLG-NKPSSLSPLKPKSTPNGGLQVKANASAPPKIN---GSPVGLKSG 67

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>WASF2_MOUSE (Q8BH43) Wiskott-Aldrich syndrome protein family member 2|
           (WASP-family protein member 2) (WAVE-2 protein)
          Length = 497

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = +3

Query: 60  PKSKPRKLSPARPNNPPIPAESRRPPALSLGFGSPAS 170
           P  KP    P  P  PP P  S  PP  S+GFGSP +
Sbjct: 310 PGPKPGFAPPPAP--PPPPPMSVPPPLPSMGFGSPGT 344

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>SMCA4_HUMAN (P51532) Probable global transcription activator SNF2L4 (EC|
           3.6.1.-) (ATP-dependent helicase SMARCA4) (SNF2-beta)
           (BRG-1 protein) (Mitotic growth and transcription
           activator) (Brahma protein homolog 1) (SWI/SNF-related
           matrix-associated actin
          Length = 1647

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 60  PKSKPRKLSPARPNNPPIPAESRRPPALS 146
           P S P+KL P +P   P PA    PPA S
Sbjct: 295 PTSTPQKLIPPQPTGRPSPAPPAVPPAAS 323

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>SEM6B_HUMAN (Q9H3T3) Semaphorin-6B precursor (Semaphorin Z) (Sema Z)|
          Length = 888

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 3   WDHSSPLLSADTASFLPKIPKSKPRKLSPAR-PNNPPIPAE 122
           WDH  PLL A  +S L          L+PAR P  PP P E
Sbjct: 735 WDHGHPLLPASASSSL--------LLLAPARAPEQPPAPGE 767

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>PCLO_CHICK (Q9PU36) Protein piccolo (Aczonin) (Fragment)|
          Length = 5120

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 48  LPKIPKSKPRKLSPARPNNPPIPAESRRP 134
           LPK+  S+P    PA P   P+PA S  P
Sbjct: 904 LPKLGPSQPVSKPPATPQKQPVPAVSHSP 932

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>CHSA_EMENI (P30584) Chitin synthase A (EC 2.4.1.16) (Chitin-UDP|
           acetyl-glucosaminyl transferase A) (Class-II chitin
           synthase A)
          Length = 1013

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
 Frame = +3

Query: 12  SSPLLSADTASFLPKIPKSKPRKLSPARPNNPPIPAESRRPPALSLGF------------ 155
           ++P +   TAS   ++  +  R  SPARP +P   A+  RPP+ +  +            
Sbjct: 46  NAPTIPPPTASGADEMRYTASRPASPARPWSPTRAADWVRPPSAAASYYERADINGSPRP 105

Query: 156 GSPASRGRGA 185
           G+P+SR  G+
Sbjct: 106 GTPSSRYGGS 115

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>ABI3_MOUSE (Q8BYZ1) ABI gene family member 3 (New molecule including SH3)|
           (Nesh)
          Length = 367

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +3

Query: 12  SSPLLSADTASFLPKIPKSKPRKLSPARPNNPPIPAESRRPPALS 146
           +S L SA +A     IP+SK + ++PA P  PP+   +  PP LS
Sbjct: 211 ASSLASAGSAEGASGIPQSKGQ-VAPATPPPPPVAPVTPPPPPLS 254

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>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2157

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +3

Query: 9    HSSPLLSADTASFLPKIPKSKPRKLSPARPNNPPIPAESR---RPPALSLGFGSPASRGR 179
            H S L  +D  +  PK        L+P  P  PP PA +R   R   +    G P+ RGR
Sbjct: 1113 HESDLAPSDKEAPTPKEGTLTQVPLAPPPPGAPPSPAPARFTARGGRVFTPRGVPSRRGR 1172

Query: 180  G 182
            G
Sbjct: 1173 G 1173

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>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 60  PKSKPRKLSPARPNNPPIPAESRRPPALSLGFGSPASR 173
           P+  PR+ SP R   PP P   R PP +     SP  R
Sbjct: 243 PRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRR 280

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>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 60  PKSKPRKLSPARPNNPPIPAESRRPPALSLGFGSPASR 173
           P+  PR+ SP R   PP P   R PP +     SP  R
Sbjct: 243 PRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRR 280

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>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 60  PKSKPRKLSPARPNNPPIPAESRRPPALSLGFGSPASR 173
           P+  PR+ SP R   PP P   R PP +     SP  R
Sbjct: 243 PRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRR 280

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>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 60  PKSKPRKLSPARPNNPPIPAESRRPPALSLGFGSPASR 173
           P+  PR+ SP R   PP P   R PP +     SP  R
Sbjct: 243 PRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRR 280

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>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related|
           protein LDC2)
          Length = 305

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 60  PKSKPRKLSPARPNNPPIPAESRRPPALSLGFGSPASR 173
           P+  PR+ SP R   PP P   R PP +     SP  R
Sbjct: 243 PRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRR 280

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>WASF2_HUMAN (Q9Y6W5) Wiskott-Aldrich syndrome protein family member 2|
           (WASP-family protein member 2) (WAVE-2 protein)
           (Verprolin homology domain-containing protein 2)
          Length = 498

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +3

Query: 60  PKSKPRKLSPARPNNPPIPAESRRPPALSLGFGSPAS 170
           P  KP    P  P  PP P     PP   +GFGSP +
Sbjct: 310 PGPKPGFAPPPAPPPPPPPMIGIPPPPPPVGFGSPGT 346

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>SEM6B_RAT (O70141) Semaphorin-6B precursor (Semaphorin Z) (Sema Z)|
          Length = 887

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 3   WDHSSPLLSADTASFLPKIPKSKPRKLSPARPNNPPIPAES 125
           WDHS  LLSA  ++ L  +  ++        P  PP+P ES
Sbjct: 736 WDHSHALLSASASTSLLLLAHTR-------APEQPPVPTES 769

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>IF2_STRAW (Q82K53) Translation initiation factor IF-2|
          Length = 1046

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +3

Query: 63  KSKPRKLSPARPNNPPIPAESRRPPALSLGFGSPASRGRGA 185
           K+ PRK +PA+P   P PA++ RP A       PA+  R A
Sbjct: 57  KAAPRKAAPAKP-GAPSPAQAARPAAPRPPAPKPAAAERPA 96

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>CYC_CHLRE (P15451) Cytochrome c|
          Length = 111

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 145 ERAGGRRLSAGMGGLFGRAGESFLGFDLGILGRKLAVS 32
           E+ GG +    +GGLFGR   +  GF      ++ AV+
Sbjct: 29  EKGGGHKQGPNLGGLFGRVSGTAAGFAYSKANKEAAVT 66

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>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2161

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
 Frame = +3

Query: 9    HSSPLLSADTASFLPKIPKSKPRKLSPARPNNPPIPAESR----RPPALSLGFGSPASRG 176
            H S L  +D  +  PK        L+P +P  PP PA +R    R   +    G P+ RG
Sbjct: 1116 HESDLAPSDKEAPPPKEGVLAQVPLAPPQPGAPPSPAPARFSTARGGRVFTPRGVPSRRG 1175

Query: 177  RG 182
            RG
Sbjct: 1176 RG 1177

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>RCOR2_HUMAN (Q8IZ40) REST corepressor 2|
          Length = 523

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 15  SPLLSADTASFLPKIPKSKPRKLSPARPNNPPIPAESRRPPAL 143
           +P L  D    +  +  S PR + PA P  PP  + S+ PP L
Sbjct: 411 APALEEDDEVQITSVSTSVPRSVPPAPPPPPPPTSLSQPPPLL 453

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>ATL3F_ARATH (Q8L9T5) RING-H2 finger protein ATL3F (RING-H2 finger protein ATL2)|
          Length = 304

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -1

Query: 212 SIAGDPIPIRPAASASGRTET*GESGRAAALGGDGGVVRPCGREFPRLRFGDFGKE 45
           ++  DP+ +   +S+SG T+    SG +  L  D G  +P   E PR  F +F  E
Sbjct: 184 AVDSDPVLVIEPSSSSGLTDEPHGSGSSQMLREDSG-RKPAAIEVPRRTFSEFEDE 238

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>CD2L7_HUMAN (Q9NYV4) Cell division cycle 2-related protein kinase 7 (EC|
           2.7.11.22) (CDC2-related protein kinase 7) (Cdc2-related
           kinase, arginine/serine-rich) (CrkRS)
          Length = 1490

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 39  ASFLPKIPKSKPRKLSPARPNNPPIPAESRRPP 137
           AS  P +P + P   +P  P  PPIPA  ++PP
Sbjct: 533 ASPPPPLPTTTPPPQTPPLPPLPPIPALPQQPP 565

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>HEMH_CHICK (O42479) Ferrochelatase, mitochondrial precursor (EC 4.99.1.1)|
           (Protoheme ferro-lyase) (Heme synthetase)
          Length = 402

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 166 LAEAAGRIGIGSPAMDWSAVTAEDLVAALREVDWSTPP 279
           + E   RIG GSP   W+AV  E +V  L  +   T P
Sbjct: 98  IQEQYSRIGGGSPIKKWTAVQGEGMVKLLDSMSPQTAP 135

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>ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 protein)|
           (Trinucleotide repeat-containing gene 13 protein)
          Length = 1312

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 3   WDHSSPLLSADTASFLPKIPKS-KPRKLSPARPNNPPIPAESRRPPALSLGFGSPA 167
           W    P  S+   S     P S  PR  +P RP + P P+   RPP+     GSPA
Sbjct: 551 WPSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRP-PSRPSRPPSHPSAHGSPA 605

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>NFIB_CHICK (P17924) Nuclear factor 1 B-type (Nuclear factor 1/B) (NF1-B)|
           (NFI-B) (NF-I/B) (CCAAT-box-binding transcription
           factor) (CTF) (TGGCA-binding protein)
          Length = 560

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = +3

Query: 12  SSPLLSADTASFLPKIPKSKPRKLSPARPNNP---PIPAESRRPPALSLGFGSPASR 173
           SSP LS       P IP      +S   P +P   P PA++  PPA S  F  P  R
Sbjct: 331 SSPRLSTFPQHHHPGIPGVAQSVISTRTPPSPSPLPFPAQAILPPAPSSYFSHPTIR 387

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>CABL2_HUMAN (Q9BTV7) CDK5 and ABL1 enzyme substrate 2 (Interactor with CDK3 2)|
           (Ik3-2)
          Length = 478

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 69  KPRKLSPARPNNPPIPAESRRPPA 140
           +P  L P     PP PAE+R PPA
Sbjct: 60  RPPSLGPGGEKPPPPPAEAREPPA 83

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>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2160

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +3

Query: 9    HSSPLLSADTASFLPKIPKSKPRKLSPARPNNPPIPAESR---RPPALSLGFGSPASRGR 179
            H S L  +D  +  PK        L+P  P  PP PA +R   R   +    G P+ RGR
Sbjct: 1116 HESDLAPSDKEAPPPKEGTLTQVPLAPPPPGAPPSPAPARFTARGGRVFTPRGVPSRRGR 1175

Query: 180  G 182
            G
Sbjct: 1176 G 1176

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>GFC1_HUMAN (P63117) HERV-F(c)1_Xq21.33 provirus ancestral Gag polyprotein (Gag|
           polyprotein) [Contains: Matrix protein; Capsid protein]
          Length = 469

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
 Frame = +3

Query: 12  SSPLLSADTASFLPKIPKSKPRKL------SPARPNNPPIPAES-RRPPALSLGFGSPAS 170
           SSPL     A  LP +P + P         +P  P  PP P  S   PPA +L   SP S
Sbjct: 118 SSPLSEPPEALALPPLPAALPPPYPGSSGPTPTAPPLPPTPPSSPANPPASALPPPSPVS 177

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>Y020_NPVAC (P41425) Hypothetical 8.0 kDa protein in EGT-IAP1 intergenic region|
          Length = 69

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 21  LLSADTASFLPKIPKSKPRKLSPARPNNPPIPAESRRPP 137
           ++S  T +F PK+ + K R+LSP +P   P P     PP
Sbjct: 10  IISRRTPTFSPKLFR-KSRELSPIKPVRTPTPPAPTPPP 47

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>NCOA6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified in breast cancer|
            protein 3) (Cancer-amplified transcriptional coactivator
            ASC-2) (Activating signal cointegrator 2) (ASC-2)
            (Peroxisome proliferator-activated receptor-interacting
            protein) (P
          Length = 2063

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 9    HSSPLLSADTASFLPKIP-KSKPRKLSPARPNNPPIPAESRRPPALSL 149
            H  P ++A T +  PK P ++ PR   P  PNN P    S  P  +SL
Sbjct: 1195 HHFPNVAAPTQTSRPKTPNRASPRPYYPQTPNNRP---PSTEPSEISL 1239

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>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2158

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
 Frame = +3

Query: 9    HSSPLLSADTASFLPKIPKSKPRKLSPARPNNPPIPAESR----RPPALSLGFGSPASRG 176
            H S L  +D  +  PK        L+P +P  PP PA +R    R   +    G P+ RG
Sbjct: 1111 HESDLAPSDKEAPPPKEGVLGQVPLAPPQPGAPPSPAPARFSTARGGRVFTPRGVPSRRG 1170

Query: 177  RG 182
            RG
Sbjct: 1171 RG 1172

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>NCOA6_MOUSE (Q9JL19) Nuclear receptor coactivator 6 (Amplified in breast cancer|
            protein 3) (Cancer-amplified transcriptional coactivator
            ASC-2) (Activating signal cointegrator 2) (ASC-2)
            (Peroxisome proliferator-activated receptor-interacting
            protein) (P
          Length = 2067

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 9    HSSPLLSADTASFLPKIP-KSKPRKLSPARPNNPPIPAESRRPPALSL 149
            H  P ++A T +  PK P ++ PR   P  PNN P    S  P  +SL
Sbjct: 1198 HHFPNVAAPTQTSRPKTPNRASPRPYYPQTPNNRP---PSTEPSEISL 1242

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>SH22A_MOUSE (Q9QXK9) SH2 domain protein 2A (Lck-associated adapter protein)|
           (Lad) (Rlk/Itk-binding protein) (Ribp)
          Length = 374

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 30  ADTASFLPKIPKSKPRKLSPARPNNPPIPAESRRPPALSLGFGSPASR 173
           A  +    K+  S+ +  S A    PPIPA+ + PP +   + SPASR
Sbjct: 245 AQASGHTEKVWASQQKATSQASRPRPPIPAKPQLPPEV---YTSPASR 289

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>MYO15_MOUSE (Q9QZZ4) Myosin-15 (Myosin XV) (Unconventional myosin-15)|
          Length = 3511

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +3

Query: 36  TASFLPKIPKSKPRKLSPARPNNPPIPAESRRPPALSLGFGS 161
           +A   P +P   P   SPA P  PP      RPP L+  +GS
Sbjct: 649 SALISPPMPAPSP---SPASPLTPPFSPTFSRPPRLASPYGS 687

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>TGIF_PANTR (Q5IS58) 5'-TG-3'-interacting factor (Homeobox protein TGIF)|
          Length = 401

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = +3

Query: 12  SSPLLSADTASFLPKIPKSK---PRKLSPARPNNPPIPAESRRPPALSLGFGSPASRGRG 182
           +SP LS  T ++LP    S    P  L  +    PP PA   +P ALS   G+ A   R 
Sbjct: 48  ASPRLSRGTLAYLPPALWSSLATPSALLGSSCAPPPPPARCPQPRALSPELGTKAGPRRP 107

Query: 183 ADW 191
             W
Sbjct: 108 HRW 110

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>PYRF_THEAC (O74110) Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMP|
           decarboxylase) (OMPDCase) (OMPdecase)
          Length = 214

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -2

Query: 184 APRPRLAGEPKPRERAGGRRLSAGMGGLFGRAGESF-LGFDLGILGRKLAVSAE 26
           AP  +L+   + R+R     +S G+G   GRA ++   G DL I+GR +  SA+
Sbjct: 142 APGNKLSDLSEIRKRTKKTIMSPGIGSQGGRASDAIKAGADLVIVGRSIYESAD 195

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>COIA1_HUMAN (P39060) Collagen alpha-1(XVIII) chain precursor [Contains:|
            Endostatin]
          Length = 1516

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 15/73 (20%)
 Frame = +3

Query: 18   PLLSADTASFLPKIPKSKPRK----------LSPARPNNPPIPAESRRPPALSL-GFGSP 164
            P  + D  +  P++P+ +P            L PARP +PP  +     P L L    SP
Sbjct: 1292 PWRADDILASPPRLPEPQPYPGAPHHSSYVHLRPARPTSPPAHSHRDFQPVLHLVALNSP 1351

Query: 165  ASRG----RGADW 191
             S G    RGAD+
Sbjct: 1352 LSGGMRGIRGADF 1364

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>VASP_CANFA (P50551) Vasodilator-stimulated phosphoprotein (VASP)|
          Length = 383

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +3

Query: 87  PARPNNPPIPAESRRPPALSLGFGSPASRGRG 182
           P  P  PP P     PP +SL  GS A  G G
Sbjct: 172 PPPPPGPPPPPGPPPPPGVSLSGGSAAGHGAG 203

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>GAR1_YEAST (P28007) H/ACA ribonucleoprotein complex subunit 1 (snoRNP protein|
           GAR1)
          Length = 205

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 12/49 (24%)
 Frame = -2

Query: 181 PRPRLAGEPKPRER-----AGGRRLSAGMG-----GLF--GRAGESFLG 71
           P+P++ G PKP+ +     A G R  A MG     G F  GR G SF G
Sbjct: 124 PKPKVVGPPKPKNKKKRSGAPGGRGGASMGRGGSRGGFRGGRGGSSFRG 172

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>USH_DROME (Q9VPQ6) Zinc-finger protein ush (Protein U-shaped)|
          Length = 1191

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 178  RPRLAGEPKPRERAGGRRLSAGMGGLFGRAGE 83
            RP  +  P P    GG  +  G+GGL G  G+
Sbjct: 1148 RPEASDSPSPNHLGGGVAVGLGIGGLVGGHGQ 1179

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>DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-related formin-1)|
           (DRF1)
          Length = 1248

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = +3

Query: 48  LPKIPKSKPRKLSPARPNNPPIPAESRRPPALSLGFGSPAS 170
           LP  P   P    P  P  PP P     PP    GFG PA+
Sbjct: 699 LPGGPGIPPPPPFPGGPGIPPPPPGMGMPPPPPFGFGVPAA 739

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>104K_THEAN (Q4U9M9) 104 kDa microneme-rhoptry antigen precursor (p104)|
          Length = 893

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 51  PKIPKSKPRKLSPARPNNPPIPAESRRPPALSLGF 155
           PK P S  R +SP RP +P  P   + P +  + F
Sbjct: 629 PKRPVSPQRPVSPRRPESPKSPKSPKSPKSPKVPF 663



 Score = 28.9 bits (63), Expect = 9.7
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 48  LPKIPKSKPRKLSPARPNNPPIPAESRRP 134
           +PK PK      SP RP +P  P   RRP
Sbjct: 616 IPKSPKRPESPKSPKRPVSPQRPVSPRRP 644


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,423,264
Number of Sequences: 219361
Number of extensions: 1034583
Number of successful extensions: 5438
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 4730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5383
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4315578075
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result