ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart25h07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1COMA_METTH (O27710) Phosphosulfolactate synthase (EC 4.4.1.19) (... 39 0.006
2COMA_METJA (Q57703) Phosphosulfolactate synthase (EC 4.4.1.19) (... 37 0.040
3AOC2_MOUSE (Q812C9) Retina-specific copper amine oxidase precurs... 32 1.3
4TFR1_CHICK (Q90997) Transferrin receptor protein 1 (TfR1) (TR) (... 30 3.7
5GPDA_BACHK (Q6HL50) Glycerol-3-phosphate dehydrogenase [NAD(P)+]... 30 4.9
6GPDA_BACCZ (Q63DM7) Glycerol-3-phosphate dehydrogenase [NAD(P)+]... 30 4.9
7GPDA_BACCR (Q81FR4) Glycerol-3-phosphate dehydrogenase [NAD(P)+]... 30 4.9
8GPDA_BACC1 (P61737) Glycerol-3-phosphate dehydrogenase [NAD(P)+]... 30 4.9
9GPDA_BACAN (Q81SW8) Glycerol-3-phosphate dehydrogenase [NAD(P)+]... 30 4.9
10NAMA_BACSU (P54550) NADPH dehydrogenase (EC 1.6.99.1) (Xenobioti... 29 6.4
11RECA_BORGA (Q662N0) Protein recA (Recombinase A) 29 6.4
12AAT_THEAQ (O33822) Aspartate aminotransferase (EC 2.6.1.1) (Tran... 29 8.3

>COMA_METTH (O27710) Phosphosulfolactate synthase (EC 4.4.1.19)|
           ((2R)-phospho-3-sulfolactate synthase) (PSL synthase)
          Length = 258

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 25/104 (24%), Positives = 51/104 (49%)
 Frame = +1

Query: 190 RPEKPRRYGVTEMRSPCYSFRPAHHALQEILDSLGPFVDGLKFSGGSHSLMGKELIREIT 369
           R  KPR+ G+T +        PA  + +++++    +VD +KF  G+  L  ++ ++E  
Sbjct: 11  RSGKPRKNGITMVLDK--GMGPA--SARDLMEISSDYVDFIKFGWGTLPLHRRDTVKEKV 66

Query: 370 DLAHKHDMYVSTGDWAEHLLRQGPSSFKQYVEECKELGFDTIEL 501
           D+    D+    G     +        ++Y +E + LGF+T+E+
Sbjct: 67  DMYRSFDVEPYPGGTLFEIAHLN-DKVEEYFQEARSLGFETLEI 109



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>COMA_METJA (Q57703) Phosphosulfolactate synthase (EC 4.4.1.19)|
           ((2R)-phospho-3-sulfolactate synthase) (PSL synthase)
          Length = 251

 Score = 36.6 bits (83), Expect = 0.040
 Identities = 18/79 (22%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
 Frame = +1

Query: 268 LQEILDSLGPFVDGLKFSGGSHSLMGKELIREITDLAHKHDMYVSTGDWA-EHLLRQGPS 444
           +++ L   G ++D +KF  G+ +++ +++++E  +      + V  G    E+   +G  
Sbjct: 28  VEDYLKVCGDYIDFVKFGWGTSAVIDRDVVKEKINYYKDWGIKVYPGGTLFEYAYSKG-- 85

Query: 445 SFKQYVEECKELGFDTIEL 501
            F +++ EC++LGF+ +E+
Sbjct: 86  KFDEFLNECEKLGFEAVEI 104



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>AOC2_MOUSE (Q812C9) Retina-specific copper amine oxidase precursor (EC|
           1.4.3.6) (RAO) (Amine oxidase [copper-containing])
          Length = 757

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 477 LFAFLYILLERRGSLAQKMLCPITSAHIH 391
           +FA +Y+LL R+GS +Q   CP     IH
Sbjct: 17  VFALVYVLLTRQGSFSQSPRCPSIPPRIH 45



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>TFR1_CHICK (Q90997) Transferrin receptor protein 1 (TfR1) (TR) (TfR) (Trfr)|
          Length = 776

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 373 LAHKHDMYVSTGDWAEHLLRQGPSSFKQYVEECKELG 483
           L H H++++  G ++E LL      F  Y++E +ELG
Sbjct: 617 LTHDHELFLDIGRYSEELLAY-QEEFLPYIKEVRELG 652



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>GPDA_BACHK (Q6HL50) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)|
           (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase)
          Length = 340

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +1

Query: 262 HALQEILDSLGPFVDGLKFSGGSHSLMGK 348
           H+L+E+L+S+G  V+G++ +  +H L  K
Sbjct: 268 HSLEEVLESMGMVVEGVRTTKAAHELAEK 296



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>GPDA_BACCZ (Q63DM7) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)|
           (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase)
          Length = 340

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +1

Query: 262 HALQEILDSLGPFVDGLKFSGGSHSLMGK 348
           H+L+E+L+S+G  V+G++ +  +H L  K
Sbjct: 268 HSLEEVLESMGMVVEGVRTTKAAHELAEK 296



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>GPDA_BACCR (Q81FR4) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)|
           (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase)
          Length = 340

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +1

Query: 262 HALQEILDSLGPFVDGLKFSGGSHSLMGK 348
           H+L+E+L+S+G  V+G++ +  +H L  K
Sbjct: 268 HSLEEVLESMGMVVEGVRTTKAAHELAEK 296



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>GPDA_BACC1 (P61737) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)|
           (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase)
          Length = 340

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +1

Query: 262 HALQEILDSLGPFVDGLKFSGGSHSLMGK 348
           H+L+E+L+S+G  V+G++ +  +H L  K
Sbjct: 268 HSLEEVLESMGMVVEGVRTTKAAHELAEK 296



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>GPDA_BACAN (Q81SW8) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)|
           (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase)
          Length = 340

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +1

Query: 262 HALQEILDSLGPFVDGLKFSGGSHSLMGK 348
           H+L+E+L+S+G  V+G++ +  +H L  K
Sbjct: 268 HSLEEVLESMGMVVEGVRTTKAAHELAEK 296



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>NAMA_BACSU (P54550) NADPH dehydrogenase (EC 1.6.99.1) (Xenobiotic reductase)|
          Length = 337

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 427 LRQGPSSFKQYVEECKELGFDTIELHA 507
           +++    FKQ     KE GFD IE+HA
Sbjct: 138 VKETVQEFKQAAARAKEAGFDVIEIHA 164



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>RECA_BORGA (Q662N0) Protein recA (Recombinase A)|
          Length = 362

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = +1

Query: 343 GKELIRE--ITDLAHKHDMYVSTGDW---AEHLLRQGPSSFKQYVEECKELGFD 489
           GK + RE  I D A KH++   TG W     + L QG  S  +Y+ +  EL  D
Sbjct: 283 GKGISREAGILDAALKHNLIQKTGSWYSLGNNKLGQGRESVVEYLNKEVELAND 336



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>AAT_THEAQ (O33822) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)|
           (ASPAT)
          Length = 383

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = +1

Query: 346 KELIREITDLAHKHDMYVSTGDWAEHLLRQG 438
           +E++R + ++A +HD Y+ + +  EHL+ +G
Sbjct: 183 EEVLRALAEMALQHDFYLVSDEIYEHLIYEG 213


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,315,030
Number of Sequences: 219361
Number of extensions: 878540
Number of successful extensions: 2794
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2792
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3696665728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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