ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart25h07 |
|---|---|
| Clone Library Name | barley_pub |
>COMA_METTH (O27710) Phosphosulfolactate synthase (EC 4.4.1.19)| ((2R)-phospho-3-sulfolactate synthase) (PSL synthase) Length = 258 Score = 39.3 bits (90), Expect = 0.006 Identities = 25/104 (24%), Positives = 51/104 (49%) Frame = +1 Query: 190 RPEKPRRYGVTEMRSPCYSFRPAHHALQEILDSLGPFVDGLKFSGGSHSLMGKELIREIT 369 R KPR+ G+T + PA + +++++ +VD +KF G+ L ++ ++E Sbjct: 11 RSGKPRKNGITMVLDK--GMGPA--SARDLMEISSDYVDFIKFGWGTLPLHRRDTVKEKV 66 Query: 370 DLAHKHDMYVSTGDWAEHLLRQGPSSFKQYVEECKELGFDTIEL 501 D+ D+ G + ++Y +E + LGF+T+E+ Sbjct: 67 DMYRSFDVEPYPGGTLFEIAHLN-DKVEEYFQEARSLGFETLEI 109
>COMA_METJA (Q57703) Phosphosulfolactate synthase (EC 4.4.1.19)| ((2R)-phospho-3-sulfolactate synthase) (PSL synthase) Length = 251 Score = 36.6 bits (83), Expect = 0.040 Identities = 18/79 (22%), Positives = 45/79 (56%), Gaps = 1/79 (1%) Frame = +1 Query: 268 LQEILDSLGPFVDGLKFSGGSHSLMGKELIREITDLAHKHDMYVSTGDWA-EHLLRQGPS 444 +++ L G ++D +KF G+ +++ +++++E + + V G E+ +G Sbjct: 28 VEDYLKVCGDYIDFVKFGWGTSAVIDRDVVKEKINYYKDWGIKVYPGGTLFEYAYSKG-- 85 Query: 445 SFKQYVEECKELGFDTIEL 501 F +++ EC++LGF+ +E+ Sbjct: 86 KFDEFLNECEKLGFEAVEI 104
>AOC2_MOUSE (Q812C9) Retina-specific copper amine oxidase precursor (EC| 1.4.3.6) (RAO) (Amine oxidase [copper-containing]) Length = 757 Score = 31.6 bits (70), Expect = 1.3 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = -1 Query: 477 LFAFLYILLERRGSLAQKMLCPITSAHIH 391 +FA +Y+LL R+GS +Q CP IH Sbjct: 17 VFALVYVLLTRQGSFSQSPRCPSIPPRIH 45
>TFR1_CHICK (Q90997) Transferrin receptor protein 1 (TfR1) (TR) (TfR) (Trfr)| Length = 776 Score = 30.0 bits (66), Expect = 3.7 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = +1 Query: 373 LAHKHDMYVSTGDWAEHLLRQGPSSFKQYVEECKELG 483 L H H++++ G ++E LL F Y++E +ELG Sbjct: 617 LTHDHELFLDIGRYSEELLAY-QEEFLPYIKEVRELG 652
>GPDA_BACHK (Q6HL50) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)| (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) Length = 340 Score = 29.6 bits (65), Expect = 4.9 Identities = 11/29 (37%), Positives = 21/29 (72%) Frame = +1 Query: 262 HALQEILDSLGPFVDGLKFSGGSHSLMGK 348 H+L+E+L+S+G V+G++ + +H L K Sbjct: 268 HSLEEVLESMGMVVEGVRTTKAAHELAEK 296
>GPDA_BACCZ (Q63DM7) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)| (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) Length = 340 Score = 29.6 bits (65), Expect = 4.9 Identities = 11/29 (37%), Positives = 21/29 (72%) Frame = +1 Query: 262 HALQEILDSLGPFVDGLKFSGGSHSLMGK 348 H+L+E+L+S+G V+G++ + +H L K Sbjct: 268 HSLEEVLESMGMVVEGVRTTKAAHELAEK 296
>GPDA_BACCR (Q81FR4) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)| (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) Length = 340 Score = 29.6 bits (65), Expect = 4.9 Identities = 11/29 (37%), Positives = 21/29 (72%) Frame = +1 Query: 262 HALQEILDSLGPFVDGLKFSGGSHSLMGK 348 H+L+E+L+S+G V+G++ + +H L K Sbjct: 268 HSLEEVLESMGMVVEGVRTTKAAHELAEK 296
>GPDA_BACC1 (P61737) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)| (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) Length = 340 Score = 29.6 bits (65), Expect = 4.9 Identities = 11/29 (37%), Positives = 21/29 (72%) Frame = +1 Query: 262 HALQEILDSLGPFVDGLKFSGGSHSLMGK 348 H+L+E+L+S+G V+G++ + +H L K Sbjct: 268 HSLEEVLESMGMVVEGVRTTKAAHELAEK 296
>GPDA_BACAN (Q81SW8) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)| (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) Length = 340 Score = 29.6 bits (65), Expect = 4.9 Identities = 11/29 (37%), Positives = 21/29 (72%) Frame = +1 Query: 262 HALQEILDSLGPFVDGLKFSGGSHSLMGK 348 H+L+E+L+S+G V+G++ + +H L K Sbjct: 268 HSLEEVLESMGMVVEGVRTTKAAHELAEK 296
>NAMA_BACSU (P54550) NADPH dehydrogenase (EC 1.6.99.1) (Xenobiotic reductase)| Length = 337 Score = 29.3 bits (64), Expect = 6.4 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +1 Query: 427 LRQGPSSFKQYVEECKELGFDTIELHA 507 +++ FKQ KE GFD IE+HA Sbjct: 138 VKETVQEFKQAAARAKEAGFDVIEIHA 164
>RECA_BORGA (Q662N0) Protein recA (Recombinase A)| Length = 362 Score = 29.3 bits (64), Expect = 6.4 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 5/54 (9%) Frame = +1 Query: 343 GKELIRE--ITDLAHKHDMYVSTGDW---AEHLLRQGPSSFKQYVEECKELGFD 489 GK + RE I D A KH++ TG W + L QG S +Y+ + EL D Sbjct: 283 GKGISREAGILDAALKHNLIQKTGSWYSLGNNKLGQGRESVVEYLNKEVELAND 336
>AAT_THEAQ (O33822) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)| (ASPAT) Length = 383 Score = 28.9 bits (63), Expect = 8.3 Identities = 10/31 (32%), Positives = 22/31 (70%) Frame = +1 Query: 346 KELIREITDLAHKHDMYVSTGDWAEHLLRQG 438 +E++R + ++A +HD Y+ + + EHL+ +G Sbjct: 183 EEVLRALAEMALQHDFYLVSDEIYEHLIYEG 213 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,315,030 Number of Sequences: 219361 Number of extensions: 878540 Number of successful extensions: 2794 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2753 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2792 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3696665728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
