Clone Information

BLAST Search Result

Clone Name	bart25h07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY623907.1\| Oryza sativa (japonica cultivar-group) cultivar T...	385	e-103
2	dbj\|AK072958.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	385	e-103
3	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	234	2e-58
4	dbj\|AP004797.3\| Oryza sativa (japonica cultivar-group) genomic D...	234	2e-58
5	dbj\|AP003766.3\| Oryza sativa (japonica cultivar-group) genomic D...	234	2e-58
6	gb\|AY772008.1\| Physcomitrella patens (2R)-phospho-3-sulfolactate...	46	0.11
7	gb\|AY871816.1\| Physcomitrella patens (2R)-phospho-3-sulfolactate...	46	0.11
8	gb\|AC154426.2\| Mus musculus BAC clone RP24-199A21 from chromosom...	44	0.44
9	gb\|AC158967.5\| Mus musculus chromosome 1, clone RP23-39N17, comp...	42	1.7
10	gb\|AC110731.10\| Mus musculus chromosome 6, clone RP23-433J5, com...	42	1.7
11	gb\|AC132620.3\| Mus musculus BAC clone RP23-179A12 from chromosom...	42	1.7
12	gb\|L41649.1\|DROGPDHD Drosophila pictiventris glycerol-3-phosphat...	42	1.7
13	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.7
14	dbj\|AP006174.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.7
15	dbj\|AP006067.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.7
16	dbj\|AK106320.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.7
17	dbj\|AK105374.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.7
18	dbj\|AK099869.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.7
19	dbj\|AK072288.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.7
20	emb\|AL646053.1\| Ralstonia solanacearum GMI1000 megaplasmid compl...	42	1.7
21	gb\|AF053356.1\| Homo sapiens chromosome 7q22 sequence, complete s...	40	6.9
22	ref\|XM_360227.1\| Magnaporthe grisea 70-15 hypothetical protein (...	40	6.9
23	ref\|XM_600317.2\| PREDICTED: Bos taurus similar to KARP-1 binding...	40	6.9
24	gb\|AC124373.4\| Mus musculus BAC clone RP24-562D16 from chromosom...	40	6.9
25	gb\|AC139526.22\| Medicago truncatula clone mth2-9b23, complete se...	40	6.9
26	emb\|AL939128.1\|SCO939128 Streptomyces coelicolor A3(2) complete ...	40	6.9
27	gb\|DQ167752.1\| Drosophila orena putative Glycerol-3-phosphate de...	40	6.9
28	ref\|XM_690391.1\| PREDICTED: Danio rerio hypothetical protein LOC...	40	6.9
29	tpg\|BK001744.1\| TPA: TPA_exp: Suid herpesvirus 1, complete genome	40	6.9
30	gb\|AF272248.1\|AF272248 Adenodaphne uniflora internal transcribed...	40	6.9
31	gb\|DQ302788.1\| Piptocephalis corymbifera isolate AFTOL-ID 145 RN...	40	6.9
32	gb\|AC009148.11\| Homo sapiens chromosome 16 clone RP11-55K13, com...	40	6.9
33	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	40	6.9
34	gb\|AY063460.1\| Helianthus tuberosus cyclin D1 (CycD1;1) mRNA, co...	40	6.9
35	dbj\|BA000043.1\| Geobacillus kaustophilus HTA426 DNA, complete ge...	40	6.9
36	dbj\|AP006618.1\| Nocardia farcinica IFM 10152 DNA, complete genome	40	6.9
37	emb\|BX510992.5\| Zebrafish DNA sequence from clone DKEYP-93H6 in ...	40	6.9
38	gb\|AY111170.1\| Zea mays CL56055_1 mRNA sequence	40	6.9
39	gb\|CP000086.1\| Burkholderia thailandensis E264 chromosome I, com...	40	6.9
40	gb\|U80909.1\|PVU80909 Pseudorabies virus DNA-binding protein (DBP...	40	6.9
41	gb\|AC174769.1\| Gasterosteus aculeatus clone VMRC28-49K14, comple...	40	6.9
42	emb\|AL807774.10\| Mouse DNA sequence from clone RP23-198L2 on chr...	40	6.9
43	gb\|L37531.1\|STMPGLYZ Streptomyces coelicolor bacteriophage (phiC...	40	6.9

>gb|AY623907.1| Oryza sativa (japonica cultivar-group) cultivar Tainung 67
           phosphosulfolactate synthase-related protein (PSR) mRNA,
           complete cds
          Length = 909

 Score =  385 bits (194), Expect = e-103
 Identities = 287/318 (90%)
 Strand = Plus / Plus

                                                                       
Query: 183 cgacgaccggccggagaagccgcgccgctacggggtcacggagatgaggagcccctgcta 242
           |||||||||||||||||||||||| || |||||||| ||||||||||||||||||| |||
Sbjct: 72  cgacgaccggccggagaagccgcggcggtacggggtgacggagatgaggagccccttcta 131

                                                                       
Query: 243 ctccttccgccccgcccaccacgcgctccaggaaatattggattccctcggtccttttgt 302
           | ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 132 cgccttccgccccgcccaccacgcgctccaggaaatattggattctctaggtccttttgt 191

                                                                       
Query: 303 tgatggcctgaagttctccggtggatctcatagtttgatgggaaaggaactgatcagaga 362
           ||||||  |||||||  | |||||||||||||||||||||||||| |||||| | |||||
Sbjct: 192 tgatggtttgaagtttactggtggatctcatagtttgatgggaaaagaactggttagaga 251

                                                                       
Query: 363 gatcactgatttagcgcacaagcatgacatgtatgtgagcactggtgattgggcagagca 422
           ||| ||||||||||| |||||||||||||| |||||||| || || ||||||||||||||
Sbjct: 252 gattactgatttagcacacaagcatgacatatatgtgagtacaggagattgggcagagca 311

                                                                       
Query: 423 tcttctgcgccaaggaccctcttctttcaagcaatatgtagaggaatgcaaagagttagg 482
           ||||||||| |||||||| |||| ||||||||||||||| ||||| ||||| |  |||||
Sbjct: 312 tcttctgcgtcaaggaccttcttttttcaagcaatatgtcgaggagtgcaaggcattagg 371

                             
Query: 483 ttttgacaccattgagct 500
            ||||||||||| |||||
Sbjct: 372 atttgacaccatcgagct 389

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>dbj|AK072958.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149H22, full
           insert sequence
          Length = 1287

 Score =  385 bits (194), Expect = e-103
 Identities = 287/318 (90%)
 Strand = Plus / Plus

                                                                       
Query: 183 cgacgaccggccggagaagccgcgccgctacggggtcacggagatgaggagcccctgcta 242
           |||||||||||||||||||||||| || |||||||| ||||||||||||||||||| |||
Sbjct: 145 cgacgaccggccggagaagccgcggcggtacggggtgacggagatgaggagccccttcta 204

                                                                       
Query: 243 ctccttccgccccgcccaccacgcgctccaggaaatattggattccctcggtccttttgt 302
           | ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 205 cgccttccgccccgcccaccacgcgctccaggaaatattggattctctaggtccttttgt 264

                                                                       
Query: 303 tgatggcctgaagttctccggtggatctcatagtttgatgggaaaggaactgatcagaga 362
           ||||||  |||||||  | |||||||||||||||||||||||||| |||||| | |||||
Sbjct: 265 tgatggtttgaagtttactggtggatctcatagtttgatgggaaaagaactggttagaga 324

                                                                       
Query: 363 gatcactgatttagcgcacaagcatgacatgtatgtgagcactggtgattgggcagagca 422
           ||| ||||||||||| |||||||||||||| |||||||| || || ||||||||||||||
Sbjct: 325 gattactgatttagcacacaagcatgacatatatgtgagtacaggagattgggcagagca 384

                                                                       
Query: 423 tcttctgcgccaaggaccctcttctttcaagcaatatgtagaggaatgcaaagagttagg 482
           ||||||||| |||||||| |||| ||||||||||||||| ||||| ||||| |  |||||
Sbjct: 385 tcttctgcgtcaaggaccttcttttttcaagcaatatgtcgaggagtgcaaggcattagg 444

                             
Query: 483 ttttgacaccattgagct 500
            ||||||||||| |||||
Sbjct: 445 atttgacaccatcgagct 462

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  234 bits (118), Expect = 2e-58
 Identities = 181/202 (89%)
 Strand = Plus / Minus

                                                                            
Query: 271      caggaaatattggattccctcggtccttttgttgatggcctgaagttctccggtggatct 330
                ||||||||||||||||| || |||||||||||||||||  |||||||  | |||||||||
Sbjct: 28081730 caggaaatattggattctctaggtccttttgttgatggtttgaagtttactggtggatct 28081671

                                                                            
Query: 331      catagtttgatgggaaaggaactgatcagagagatcactgatttagcgcacaagcatgac 390
                ||||||||||||||||| |||||| | |||||||| ||||||||||| ||||||||||||
Sbjct: 28081670 catagtttgatgggaaaagaactggttagagagattactgatttagcacacaagcatgac 28081611

                                                                            
Query: 391      atgtatgtgagcactggtgattgggcagagcatcttctgcgccaaggaccctcttctttc 450
                || |||||||| || || ||||||||||||||||||||||| |||||||| |||| ||||
Sbjct: 28081610 atatatgtgagtacaggagattgggcagagcatcttctgcgtcaaggaccttcttttttc 28081551

                                      
Query: 451      aagcaatatgtagaggaatgca 472
                ||||||||||| |||| |||||
Sbjct: 28081550 aagcaatatgtcgaggtatgca 28081529



 Score =  143 bits (72), Expect = 6e-31
 Identities = 87/92 (94%)
 Strand = Plus / Minus

                                                                            
Query: 183      cgacgaccggccggagaagccgcgccgctacggggtcacggagatgaggagcccctgcta 242
                |||||||||||||||||||||||| || |||||||| ||||||||||||||||||| |||
Sbjct: 28082443 cgacgaccggccggagaagccgcggcggtacggggtgacggagatgaggagccccttcta 28082384

                                                
Query: 243      ctccttccgccccgcccaccacgcgctccagg 274
                | ||||||||||||||||||||||||||||||
Sbjct: 28082383 cgccttccgccccgcccaccacgcgctccagg 28082352

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>dbj|AP004797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0547F09
          Length = 140615

 Score =  234 bits (118), Expect = 2e-58
 Identities = 181/202 (89%)
 Strand = Plus / Minus

                                                                          
Query: 271    caggaaatattggattccctcggtccttttgttgatggcctgaagttctccggtggatct 330
              ||||||||||||||||| || |||||||||||||||||  |||||||  | |||||||||
Sbjct: 126549 caggaaatattggattctctaggtccttttgttgatggtttgaagtttactggtggatct 126490

                                                                          
Query: 331    catagtttgatgggaaaggaactgatcagagagatcactgatttagcgcacaagcatgac 390
              ||||||||||||||||| |||||| | |||||||| ||||||||||| ||||||||||||
Sbjct: 126489 catagtttgatgggaaaagaactggttagagagattactgatttagcacacaagcatgac 126430

                                                                          
Query: 391    atgtatgtgagcactggtgattgggcagagcatcttctgcgccaaggaccctcttctttc 450
              || |||||||| || || ||||||||||||||||||||||| |||||||| |||| ||||
Sbjct: 126429 atatatgtgagtacaggagattgggcagagcatcttctgcgtcaaggaccttcttttttc 126370

                                    
Query: 451    aagcaatatgtagaggaatgca 472
              ||||||||||| |||| |||||
Sbjct: 126369 aagcaatatgtcgaggtatgca 126348



 Score =  143 bits (72), Expect = 6e-31
 Identities = 87/92 (94%)
 Strand = Plus / Minus

                                                                          
Query: 183    cgacgaccggccggagaagccgcgccgctacggggtcacggagatgaggagcccctgcta 242
              |||||||||||||||||||||||| || |||||||| ||||||||||||||||||| |||
Sbjct: 127262 cgacgaccggccggagaagccgcggcggtacggggtgacggagatgaggagccccttcta 127203

                                              
Query: 243    ctccttccgccccgcccaccacgcgctccagg 274
              | ||||||||||||||||||||||||||||||
Sbjct: 127202 cgccttccgccccgcccaccacgcgctccagg 127171

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>dbj|AP003766.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0009H10
          Length = 175754

 Score =  234 bits (118), Expect = 2e-58
 Identities = 181/202 (89%)
 Strand = Plus / Minus

                                                                         
Query: 271   caggaaatattggattccctcggtccttttgttgatggcctgaagttctccggtggatct 330
             ||||||||||||||||| || |||||||||||||||||  |||||||  | |||||||||
Sbjct: 12636 caggaaatattggattctctaggtccttttgttgatggtttgaagtttactggtggatct 12577

                                                                         
Query: 331   catagtttgatgggaaaggaactgatcagagagatcactgatttagcgcacaagcatgac 390
             ||||||||||||||||| |||||| | |||||||| ||||||||||| ||||||||||||
Sbjct: 12576 catagtttgatgggaaaagaactggttagagagattactgatttagcacacaagcatgac 12517

                                                                         
Query: 391   atgtatgtgagcactggtgattgggcagagcatcttctgcgccaaggaccctcttctttc 450
             || |||||||| || || ||||||||||||||||||||||| |||||||| |||| ||||
Sbjct: 12516 atatatgtgagtacaggagattgggcagagcatcttctgcgtcaaggaccttcttttttc 12457

                                   
Query: 451   aagcaatatgtagaggaatgca 472
             ||||||||||| |||| |||||
Sbjct: 12456 aagcaatatgtcgaggtatgca 12435



 Score =  143 bits (72), Expect = 6e-31
 Identities = 87/92 (94%)
 Strand = Plus / Minus

                                                                         
Query: 183   cgacgaccggccggagaagccgcgccgctacggggtcacggagatgaggagcccctgcta 242
             |||||||||||||||||||||||| || |||||||| ||||||||||||||||||| |||
Sbjct: 13349 cgacgaccggccggagaagccgcggcggtacggggtgacggagatgaggagccccttcta 13290

                                             
Query: 243   ctccttccgccccgcccaccacgcgctccagg 274
             | ||||||||||||||||||||||||||||||
Sbjct: 13289 cgccttccgccccgcccaccacgcgctccagg 13258

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>gb|AY772008.1| Physcomitrella patens (2R)-phospho-3-sulfolactate synthase-like
           protein mRNA, complete cds
          Length = 846

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 392 tgtatgtgagcactggtgattgggcagagca 422
           |||||||||| ||||||| ||||||||||||
Sbjct: 290 tgtatgtgagtactggtggttgggcagagca 320

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>gb|AY871816.1| Physcomitrella patens (2R)-phospho-3-sulfolactate synthase-related
            protein (PSR) gene, complete cds
          Length = 2951

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 392  tgtatgtgagcactggtgattgggcagagca 422
            |||||||||| ||||||| ||||||||||||
Sbjct: 1381 tgtatgtgagtactggtggttgggcagagca 1411

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>gb|AC154426.2| Mus musculus BAC clone RP24-199A21 from chromosome 14, complete sequence
          Length = 210568

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 453    gcaatatgtagaggaatgcaaa 474
              ||||||||||||||||||||||
Sbjct: 114679 gcaatatgtagaggaatgcaaa 114658

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>gb|AC158967.5| Mus musculus chromosome 1, clone RP23-39N17, complete sequence
          Length = 244130

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 454   caatatgtagaggaatgcaaa 474
             |||||||||||||||||||||
Sbjct: 72716 caatatgtagaggaatgcaaa 72736

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>gb|AC110731.10| Mus musculus chromosome 6, clone RP23-433J5, complete sequence
          Length = 206482

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 6      cttccacctccttctccgctcttcc 30
              ||||||||||||||||| |||||||
Sbjct: 188659 cttccacctccttctccactcttcc 188683

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>gb|AC132620.3| Mus musculus BAC clone RP23-179A12 from chromosome 6, complete sequence
          Length = 178174

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 6      cttccacctccttctccgctcttcc 30
              ||||||||||||||||| |||||||
Sbjct: 122336 cttccacctccttctccactcttcc 122312

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>gb|L41649.1|DROGPDHD Drosophila pictiventris glycerol-3-phosphate dehydrogenase (Gpdh)
           gene, exons
          Length = 1034

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 297 ttttgttgatggcctgaagtt 317
           |||||||||||||||||||||
Sbjct: 486 ttttgttgatggcctgaagtt 506

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 165      ggaggcgcgcggccccggcga 185
                |||||||||||||||||||||
Sbjct: 20811767 ggaggcgcgcggccccggcga 20811747

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>dbj|AP006174.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
            clone:P0229B10
          Length = 114509

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 165  ggaggcgcgcggccccggcga 185
            |||||||||||||||||||||
Sbjct: 3993 ggaggcgcgcggccccggcga 3973

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>dbj|AP006067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0569E11
          Length = 157319

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 165   ggaggcgcgcggccccggcga 185
             |||||||||||||||||||||
Sbjct: 86796 ggaggcgcgcggccccggcga 86776

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>dbj|AK106320.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-E07, full
           insert sequence
          Length = 2218

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 165 ggaggcgcgcggccccggcga 185
           |||||||||||||||||||||
Sbjct: 741 ggaggcgcgcggccccggcga 721

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>dbj|AK105374.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-D05, full
            insert sequence
          Length = 1501

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 165  ggaggcgcgcggccccggcga 185
            |||||||||||||||||||||
Sbjct: 1162 ggaggcgcgcggccccggcga 1182

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>dbj|AK099869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111E22, full
            insert sequence
          Length = 2302

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 165  ggaggcgcgcggccccggcga 185
            |||||||||||||||||||||
Sbjct: 1169 ggaggcgcgcggccccggcga 1189

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>dbj|AK072288.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012O05, full
            insert sequence
          Length = 3387

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 165  ggaggcgcgcggccccggcga 185
            |||||||||||||||||||||
Sbjct: 1173 ggaggcgcgcggccccggcga 1193

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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 155     cgctgtcgctggaggcgcgcg 175
               |||||||||||||||||||||
Sbjct: 1953376 cgctgtcgctggaggcgcgcg 1953356

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>gb|AF053356.1| Homo sapiens chromosome 7q22 sequence, complete sequence
          Length = 227968

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 246    cttccgccccgcccaccacgcgctccag 273
              ||||||||||||||||| ||||| ||||
Sbjct: 171341 cttccgccccgcccaccccgcgccccag 171314

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>ref|XM_360227.1| Magnaporthe grisea 70-15 hypothetical protein (MG05601.4) partial
           mRNA
          Length = 1110

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 294 tccttttgttgatggcctga 313
           ||||||||||||||||||||
Sbjct: 829 tccttttgttgatggcctga 810

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>ref|XM_600317.2| PREDICTED: Bos taurus similar to KARP-1 binding protein 1
            (LOC522044), mRNA
          Length = 7216

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 174  cggccccggcgacgaccggc 193
            ||||||||||||||||||||
Sbjct: 2538 cggccccggcgacgaccggc 2557

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>gb|AC124373.4| Mus musculus BAC clone RP24-562D16 from chromosome 12, complete sequence
          Length = 168916

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 387    tgacatgtatgtgagcactg 406
              ||||||||||||||||||||
Sbjct: 101198 tgacatgtatgtgagcactg 101179

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>gb|AC139526.22| Medicago truncatula clone mth2-9b23, complete sequence
          Length = 141491

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 366    cactgatttagcgcacaagcatga 389
              |||||||||||| |||||||||||
Sbjct: 130550 cactgatttagctcacaagcatga 130573

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>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29
          Length = 296500

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 170    cgcgcggccccggcgacgaccggc 193
              ||||| ||||||||||||||||||
Sbjct: 197401 cgcgccgccccggcgacgaccggc 197424

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>gb|DQ167752.1| Drosophila orena putative Glycerol-3-phosphate dehydrogenase (Gpdh)
           gene, exons 3 through 6 and partial cds
          Length = 1508

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 298 tttgttgatggcctgaagtt 317
           ||||||||||||||||||||
Sbjct: 503 tttgttgatggcctgaagtt 522

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>ref|XM_690391.1| PREDICTED: Danio rerio hypothetical protein LOC567103 (LOC567103),
           mRNA
          Length = 2129

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 335 gtttgatgggaaaggaactg 354
           ||||||||||||||||||||
Sbjct: 378 gtttgatgggaaaggaactg 397

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>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome
          Length = 143461

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   ggcgctgtcgctggaggcgc 172
             ||||||||||||||||||||
Sbjct: 24392 ggcgctgtcgctggaggcgc 24373

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>gb|AF272248.1|AF272248 Adenodaphne uniflora internal transcribed spacer 1, partial
           sequence; 5.8S ribosomal RNA gene and internal
           transcribed spacer 2, complete sequence; and 26S
           ribosomal RNA gene, partial sequence
          Length = 632

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 159 gtcgctggaggcgcgcggccccggcgacgacc 190
           |||||| | ||||||||||||||| |||||||
Sbjct: 33  gtcgctcgcggcgcgcggccccggggacgacc 64

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>gb|DQ302788.1| Piptocephalis corymbifera isolate AFTOL-ID 145 RNA polymerase II
            second largest subunit (RPB2) gene, partial cds
          Length = 2038

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 171  gcgcggccccggcgacgacc 190
            ||||||||||||||||||||
Sbjct: 1138 gcgcggccccggcgacgacc 1157

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>gb|AC009148.11| Homo sapiens chromosome 16 clone RP11-55K13, complete sequence
          Length = 157518

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 447   tttcaagcaatatgtagagg 466
             ||||||||||||||||||||
Sbjct: 99477 tttcaagcaatatgtagagg 99458

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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 161     cgctggaggcgcgcggccccggcgacga 188
               |||||| ||||| |||||||||||||||
Sbjct: 3906628 cgctggtggcgcccggccccggcgacga 3906601



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 173     gcggccccggcgacgaccgg 192
               ||||||||||||||||||||
Sbjct: 2885165 gcggccccggcgacgaccgg 2885184

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>gb|AY063460.1| Helianthus tuberosus cyclin D1 (CycD1;1) mRNA, complete cds
          Length = 1788

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 179 ccggcgacgaccggccggag 198
           ||||||||||||||||||||
Sbjct: 229 ccggcgacgaccggccggag 248

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>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    tgtcgctggaggcgcgcggc 177
              ||||||||||||||||||||
Sbjct: 303052 tgtcgctggaggcgcgcggc 303071

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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 174     cggccccggcgacgaccggc 193
               ||||||||||||||||||||
Sbjct: 4037914 cggccccggcgacgaccggc 4037933



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 174     cggccccggcgacgaccggc 193
               ||||||||||||||||||||
Sbjct: 2192686 cggccccggcgacgaccggc 2192705

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>emb|BX510992.5| Zebrafish DNA sequence from clone DKEYP-93H6 in linkage group 20,
              complete sequence
          Length = 211650

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 335    gtttgatgggaaaggaactg 354
              ||||||||||||||||||||
Sbjct: 146777 gtttgatgggaaaggaactg 146796

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>gb|AY111170.1| Zea mays CL56055_1 mRNA sequence
          Length = 634

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 8   tccacctccttctccgctcttccc 31
           ||||||||||| ||||||||||||
Sbjct: 567 tccacctccttatccgctcttccc 544

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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 166    gaggcgcgcggccccggcgacgac 189
              ||||||||||||||||||| ||||
Sbjct: 585648 gaggcgcgcggccccggcgtcgac 585671

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>gb|U80909.1|PVU80909 Pseudorabies virus DNA-binding protein (DBP) gene, complete cds
          Length = 3957

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 153  ggcgctgtcgctggaggcgc 172
            ||||||||||||||||||||
Sbjct: 1277 ggcgctgtcgctggaggcgc 1296

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>gb|AC174769.1| Gasterosteus aculeatus clone VMRC28-49K14, complete sequence
          Length = 135249

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 283    gattccctcggtccttttgt 302
              ||||||||||||||||||||
Sbjct: 126792 gattccctcggtccttttgt 126811

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>emb|AL807774.10| Mouse DNA sequence from clone RP23-198L2 on chromosome 4, complete
            sequence
          Length = 67374

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 334  agtttgatgggaaaggaactgatc 357
            |||||||||||| |||||||||||
Sbjct: 5843 agtttgatgggacaggaactgatc 5820

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>gb|L37531.1|STMPGLYZ Streptomyces coelicolor bacteriophage (phiC31) resistance (pglY and
            pglZ) genes, complete cds's
          Length = 9461

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 170  cgcgcggccccggcgacgaccggc 193
            ||||| ||||||||||||||||||
Sbjct: 5088 cgcgccgccccggcgacgaccggc 5111


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,428,476
Number of Sequences: 3902068
Number of extensions: 3428476
Number of successful extensions: 67677
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67158
Number of HSP's gapped (non-prelim): 519
length of query: 507
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 485
effective length of database: 17,147,199,772
effective search space: 8316391889420
effective search space used: 8316391889420
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result