>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 26/103 (25%), Positives = 47/103 (45%)
 Frame = -2

Query: 509  HCQEHLIQKIHLNE*QSIHPYXXXXXXXXXXXQSWFCKYYRHQIRSYRQSHGIHQFASRK 330
            H Q+HL Q++H  +    HP                    +HQ +  + +  I Q  S++
Sbjct: 3881 HNQQHLNQQLHAQQ----HPTQK-----------------QHQAQQ-QFNQQIQQHQSQQ 3918

Query: 329  QHEACQMVLAVATRLTLQKKVQEAWQVVQNQARQKQLQKLHQV 201
            QH+  Q   A    L+ Q+   +     Q+QA+Q+QLQ++ ++
Sbjct: 3919 QHQVQQQNQAQQQHLSQQQHQSQQQLNQQHQAQQQQLQQIQKL 3961

>SNAB_MOUSE (P28663) Beta-soluble NSF attachment protein (SNAP-beta)|
           (N-ethylmaleimide-sensitive factor attachment protein,
           beta) (Brain protein I47)
          Length = 298

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
 Frame = +2

Query: 338 MQIDGSHDSVDSFVSDAGSIYK-----TKIDGAKSAATGLTDKDELIVIRSDESSGSDVL 502
           MQ+   HDS  SFV DAG+ YK       I+   +A    TD     +      + +++ 
Sbjct: 73  MQLQSKHDSATSFV-DAGNAYKKADPQEAINCLNAAIDIYTDMGRFTIAAKHHITIAEIY 131

Query: 503 DNELTDL 523
           + EL D+
Sbjct: 132 ETELVDI 138

>SNAB_HUMAN (Q9H115) Beta-soluble NSF attachment protein (SNAP-beta)|
           (N-ethylmaleimide-sensitive factor attachment protein,
           beta)
          Length = 298

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
 Frame = +2

Query: 338 MQIDGSHDSVDSFVSDAGSIYK-----TKIDGAKSAATGLTDKDELIVIRSDESSGSDVL 502
           MQ+   HDS  SFV DAG+ YK       I+   +A    TD     +      + +++ 
Sbjct: 73  MQLQSKHDSATSFV-DAGNAYKKADPQEAINCLNAAIDIYTDMGRFTIAAKHHITIAEIY 131

Query: 503 DNELTDL 523
           + EL D+
Sbjct: 132 ETELVDI 138

>SNAB_BOVIN (P81126) Beta-soluble NSF attachment protein (SNAP-beta)|
           (N-ethylmaleimide-sensitive factor attachment protein,
           beta)
          Length = 298

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
 Frame = +2

Query: 338 MQIDGSHDSVDSFVSDAGSIYK-----TKIDGAKSAATGLTDKDELIVIRSDESSGSDVL 502
           MQ+   HDS  SFV DAG+ YK       I+   +A    TD     +      + +++ 
Sbjct: 73  MQLQSKHDSATSFV-DAGNAYKKADPQEAINCLNAAIDIYTDMGRFTIAAKHHITIAEIY 131

Query: 503 DNELTDL 523
           + EL D+
Sbjct: 132 ETELVDI 138

>HES3_MOUSE (Q61657) Transcription factor HES-3 (Hairy and enhancer of split 3)|
          Length = 175

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 383 QIRSYRQSHGIHQFASRKQHEACQMVLAVATRLTLQKKVQEAWQV 249
           Q+RS  + H  HQ   RK  +A  + L+V    +LQ  +Q  W V
Sbjct: 15  QLRSLLERHYSHQIRKRKLEKADILELSVKYMRSLQNSLQGLWPV 59

>HES3_RAT (Q04667) Transcription factor HES-3 (Hairy and enhancer of split 3)|
          Length = 175

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 383 QIRSYRQSHGIHQFASRKQHEACQMVLAVATRLTLQKKVQEAWQV 249
           Q+RS  + H  HQ   RK  +A  + L+V    +LQ  +Q  W V
Sbjct: 15  QLRSLLERHYSHQIRKRKLEKADILELSVKYVRSLQNSLQGLWLV 59


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,258,532
Number of Sequences: 219361
Number of extensions: 985433
Number of successful extensions: 3176
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3175
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)