ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart25g02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 131 bits (66), Expect = 3e-27 Identities = 121/138 (87%), Gaps = 1/138 (0%) Strand = Plus / Minus Query: 412 gaggcctacgtgcgcgcactggtgccgcttccgagctgcatcatctccgactggtgtaac 471 ||||||||||||||||| |||| || || |||||||||||||||||||||||||| ||| Sbjct: 5956899 gaggcctacgtgcgcgctctggagcggcgcccgagctgcatcatctccgactggtgcaac 5956840 Query: 472 tcgtggacagccggcgtcgccgcttgcctcggcatcccgcggctgttcttcca-gggccg 530 ||||| | ||||| |||||| ||||||||||||||||||| |||||||| |||||| Sbjct: 5956839 acgtgggccgccggagtcgcccggagcctcggcatcccgcggctcttcttccacgggccg 5956780 Query: 531 tcgtgcttcttctcgctc 548 |||||||||| ||||||| Sbjct: 5956779 tcgtgcttctactcgctc 5956762 Score = 107 bits (54), Expect = 4e-20 Identities = 118/138 (85%), Gaps = 1/138 (0%) Strand = Plus / Minus Query: 412 gaggcctacgtgcgcgcactggtgccgcttccgagctgcatcatctccgactggtgtaac 471 ||||||||||||||||| |||| || || |||||||||||||||||||||||||| ||| Sbjct: 5967294 gaggcctacgtgcgcgctctggagcggcgcccgagctgcatcatctccgactggtgcaac 5967235 Query: 472 tcgtggacagccggcgtcgccgcttgcctcggcatcccgcggctgttcttcca-gggccg 530 ||||| | ||||| || ||| | |||||||||||||||| |||||||| |||||| Sbjct: 5967234 acgtgggccgccggagttgcctggaggatcggcatcccgcggctcttcttccacgggccg 5967175 Query: 531 tcgtgcttcttctcgctc 548 |||||||||| ||||||| Sbjct: 5967174 tcgtgcttctactcgctc 5967157 Score = 77.8 bits (39), Expect = 3e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 99 gccgccgcacttcgtcttggtccctcttgcggcgcacggccatctcatcccaatggtcga 158 |||||||||||||||| | ||||| || ||||||| ||||| |||||| |||||||| Sbjct: 6017914 gccgccgcacttcgtcatcgtcccctttccggcgcagggccacaccatccccatggtcga 6017855 Query: 159 cctcgcgcgcctcctcgcg 177 ||||||||||||||||||| Sbjct: 6017854 cctcgcgcgcctcctcgcg 6017836 Score = 77.8 bits (39), Expect = 3e-11 Identities = 66/75 (88%) Strand = Plus / Minus Query: 102 gccgcacttcgtcttggtccctcttgcggcgcacggccatctcatcccaatggtcgacct 161 ||||||||||||| | | |||||| ||||||||||| || |||||||| |||||||| || Sbjct: 5957203 gccgcacttcgtcctcgcccctctcgcggcgcacggtcacctcatccccatggtcgatct 5957144 Query: 162 cgcgcgcctcctcgc 176 |||| |||||||||| Sbjct: 5957143 cgcgggcctcctcgc 5957129 Score = 73.8 bits (37), Expect = 5e-10 Identities = 88/101 (87%), Gaps = 3/101 (2%) Strand = Plus / Minus Query: 442 ccgagctgcatcatctccgactggtgtaactcgtggacagccggcgtcgc-cgcttgcct 500 ||||||||||||||||||||||||| ||||||||||| |||||||| || ||| || Sbjct: 5978610 ccgagctgcatcatctccgactggtccaactcgtggacggccggcgtggcgcgc-cgcgc 5978552 Query: 501 cggcatcccgcggctgttcttcca-gggccgtcgtgcttct 540 |||| | ||||||||||||||||| || ||||||||||||| Sbjct: 5978551 cggcgtgccgcggctgttcttccatggcccgtcgtgcttct 5978511 Score = 71.9 bits (36), Expect = 2e-09 Identities = 85/100 (85%), Gaps = 1/100 (1%) Strand = Plus / Plus Query: 442 ccgagctgcatcatctccgactggtgtaactcgtggacagccggcgtcgccgcttgcctc 501 ||||||||| ||||||||||||||| ||| ||||||| |||||||| || || || Sbjct: 6007177 ccgagctgcgtcatctccgactggtccaacccgtggacggccggcgtggcgagccgcgtc 6007236 Query: 502 ggcatcccgcggctgttcttcca-gggccgtcgtgcttct 540 ||| ||||||||||||||||||| || ||||||||||||| Sbjct: 6007237 ggcgtcccgcggctgttcttccatggcccgtcgtgcttct 6007276 Score = 69.9 bits (35), Expect = 8e-09 Identities = 65/75 (86%) Strand = Plus / Minus Query: 102 gccgcacttcgtcttggtccctcttgcggcgcacggccatctcatcccaatggtcgacct 161 ||||||||||||| | | |||||| ||||||||||| || ||||||| |||||||| || Sbjct: 5967598 gccgcacttcgtcctcgcccctctcgcggcgcacggtcacgtcatccccatggtcgatct 5967539 Query: 162 cgcgcgcctcctcgc 176 |||| |||||||||| Sbjct: 5967538 cgcgggcctcctcgc 5967524 Score = 63.9 bits (32), Expect = 5e-07 Identities = 70/80 (87%), Gaps = 2/80 (2%) Strand = Plus / Minus Query: 99 gccgccgcacttcgtcttggtccctcttgc-ggcgcacggccatctcatcccaatggtcg 157 ||||||||| |||||| | ||||| ||||| |||||| ||||| |||||| ||||||| Sbjct: 5978953 gccgccgcatttcgtcatcgtccc-cttgccggcgcagggccacaccatccccatggtcg 5978895 Query: 158 acctcgcgcgcctcctcgcg 177 |||||||||||||||||||| Sbjct: 5978894 acctcgcgcgcctcctcgcg 5978875 Score = 60.0 bits (30), Expect = 8e-06 Identities = 84/98 (85%), Gaps = 3/98 (3%) Strand = Plus / Minus Query: 445 agctgcatcatctccgactggtgtaactcgtggacagccggcgtcgc-cgcttgcctcgg 503 |||||||||||||| ||||||| ||||||||||| |||||||| || ||| || ||| Sbjct: 6017568 agctgcatcatctctgactggtccaactcgtggacggccggcgtggcgcgc-cgcgccgg 6017510 Query: 504 catcccgcggctgttcttcca-gggccgtcgtgcttct 540 | | ||||||||||||||||| || ||||||||||||| Sbjct: 6017509 cgtgccgcggctgttcttccatggcccgtcgtgcttct 6017472 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 145 atcccaatggtcgacctcgcgcgcctcctcgcg 177 ||||| ||||||||||||||||||||||||||| Sbjct: 6006880 atccccatggtcgacctcgcgcgcctcctcgcg 6006912 Score = 58.0 bits (29), Expect = 3e-05 Identities = 80/97 (82%) Strand = Plus / Minus Query: 250 gacaaggccgctcgcgcgaagctcctgctggaggtcgtcgagctcccgtactcgcctgcc 309 ||||||||||| |||| |||||| | || ||| |||| |||||||||| |||||| ||| Sbjct: 5967456 gacaaggccgcgcgcgagaagctgcccctcgagatcgtggagctcccgttctcgccggcc 5967397 Query: 310 gactacggcctgccaccggactgccagaacgccgaca 346 | |||||||| ||||||||||||||||||||| Sbjct: 5967396 gtggcaggcctgccgtcggactgccagaacgccgaca 5967360
>dbj|AP005915.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0056C19 Length = 147739 Score = 131 bits (66), Expect = 3e-27 Identities = 121/138 (87%), Gaps = 1/138 (0%) Strand = Plus / Minus Query: 412 gaggcctacgtgcgcgcactggtgccgcttccgagctgcatcatctccgactggtgtaac 471 ||||||||||||||||| |||| || || |||||||||||||||||||||||||| ||| Sbjct: 135120 gaggcctacgtgcgcgctctggagcggcgcccgagctgcatcatctccgactggtgcaac 135061 Query: 472 tcgtggacagccggcgtcgccgcttgcctcggcatcccgcggctgttcttcca-gggccg 530 ||||| | ||||| |||||| ||||||||||||||||||| |||||||| |||||| Sbjct: 135060 acgtgggccgccggagtcgcccggagcctcggcatcccgcggctcttcttccacgggccg 135001 Query: 531 tcgtgcttcttctcgctc 548 |||||||||| ||||||| Sbjct: 135000 tcgtgcttctactcgctc 134983 Score = 107 bits (54), Expect = 4e-20 Identities = 118/138 (85%), Gaps = 1/138 (0%) Strand = Plus / Minus Query: 412 gaggcctacgtgcgcgcactggtgccgcttccgagctgcatcatctccgactggtgtaac 471 ||||||||||||||||| |||| || || |||||||||||||||||||||||||| ||| Sbjct: 145515 gaggcctacgtgcgcgctctggagcggcgcccgagctgcatcatctccgactggtgcaac 145456 Query: 472 tcgtggacagccggcgtcgccgcttgcctcggcatcccgcggctgttcttcca-gggccg 530 ||||| | ||||| || ||| | |||||||||||||||| |||||||| |||||| Sbjct: 145455 acgtgggccgccggagttgcctggaggatcggcatcccgcggctcttcttccacgggccg 145396 Query: 531 tcgtgcttcttctcgctc 548 |||||||||| ||||||| Sbjct: 145395 tcgtgcttctactcgctc 145378 Score = 77.8 bits (39), Expect = 3e-11 Identities = 66/75 (88%) Strand = Plus / Minus Query: 102 gccgcacttcgtcttggtccctcttgcggcgcacggccatctcatcccaatggtcgacct 161 ||||||||||||| | | |||||| ||||||||||| || |||||||| |||||||| || Sbjct: 135424 gccgcacttcgtcctcgcccctctcgcggcgcacggtcacctcatccccatggtcgatct 135365 Query: 162 cgcgcgcctcctcgc 176 |||| |||||||||| Sbjct: 135364 cgcgggcctcctcgc 135350 Score = 69.9 bits (35), Expect = 8e-09 Identities = 65/75 (86%) Strand = Plus / Minus Query: 102 gccgcacttcgtcttggtccctcttgcggcgcacggccatctcatcccaatggtcgacct 161 ||||||||||||| | | |||||| ||||||||||| || ||||||| |||||||| || Sbjct: 145819 gccgcacttcgtcctcgcccctctcgcggcgcacggtcacgtcatccccatggtcgatct 145760 Query: 162 cgcgcgcctcctcgc 176 |||| |||||||||| Sbjct: 145759 cgcgggcctcctcgc 145745 Score = 58.0 bits (29), Expect = 3e-05 Identities = 80/97 (82%) Strand = Plus / Minus Query: 250 gacaaggccgctcgcgcgaagctcctgctggaggtcgtcgagctcccgtactcgcctgcc 309 ||||||||||| |||| |||||| | || ||| |||| |||||||||| |||||| ||| Sbjct: 145677 gacaaggccgcgcgcgagaagctgcccctcgagatcgtggagctcccgttctcgccggcc 145618 Query: 310 gactacggcctgccaccggactgccagaacgccgaca 346 | |||||||| ||||||||||||||||||||| Sbjct: 145617 gtggcaggcctgccgtcggactgccagaacgccgaca 145581
>dbj|AK066593.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073P05, full insert sequence Length = 1795 Score = 131 bits (66), Expect = 3e-27 Identities = 121/138 (87%), Gaps = 1/138 (0%) Strand = Plus / Plus Query: 412 gaggcctacgtgcgcgcactggtgccgcttccgagctgcatcatctccgactggtgtaac 471 ||||||||||||||||| |||| || || |||||||||||||||||||||||||| ||| Sbjct: 361 gaggcctacgtgcgcgctctggagcggcgcccgagctgcatcatctccgactggtgcaac 420 Query: 472 tcgtggacagccggcgtcgccgcttgcctcggcatcccgcggctgttcttcca-gggccg 530 ||||| | ||||| |||||| ||||||||||||||||||| |||||||| |||||| Sbjct: 421 acgtgggccgccggagtcgcccggagcctcggcatcccgcggctcttcttccacgggccg 480 Query: 531 tcgtgcttcttctcgctc 548 |||||||||| ||||||| Sbjct: 481 tcgtgcttctactcgctc 498 Score = 77.8 bits (39), Expect = 3e-11 Identities = 66/75 (88%) Strand = Plus / Plus Query: 102 gccgcacttcgtcttggtccctcttgcggcgcacggccatctcatcccaatggtcgacct 161 ||||||||||||| | | |||||| ||||||||||| || |||||||| |||||||| || Sbjct: 57 gccgcacttcgtcctcgcccctctcgcggcgcacggtcacctcatccccatggtcgatct 116 Query: 162 cgcgcgcctcctcgc 176 |||| |||||||||| Sbjct: 117 cgcgggcctcctcgc 131
>dbj|AK066469.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067D15, full insert sequence Length = 1999 Score = 131 bits (66), Expect = 3e-27 Identities = 121/138 (87%), Gaps = 1/138 (0%) Strand = Plus / Plus Query: 412 gaggcctacgtgcgcgcactggtgccgcttccgagctgcatcatctccgactggtgtaac 471 ||||||||||||||||| |||| || || |||||||||||||||||||||||||| ||| Sbjct: 379 gaggcctacgtgcgcgctctggagcggcgcccgagctgcatcatctccgactggtgcaac 438 Query: 472 tcgtggacagccggcgtcgccgcttgcctcggcatcccgcggctgttcttcca-gggccg 530 ||||| | ||||| |||||| ||||||||||||||||||| |||||||| |||||| Sbjct: 439 acgtgggccgccggagtcgcccggagcctcggcatcccgcggctcttcttccacgggccg 498 Query: 531 tcgtgcttcttctcgctc 548 |||||||||| ||||||| Sbjct: 499 tcgtgcttctactcgctc 516 Score = 77.8 bits (39), Expect = 3e-11 Identities = 66/75 (88%) Strand = Plus / Plus Query: 102 gccgcacttcgtcttggtccctcttgcggcgcacggccatctcatcccaatggtcgacct 161 ||||||||||||| | | |||||| ||||||||||| || |||||||| |||||||| || Sbjct: 75 gccgcacttcgtcctcgcccctctcgcggcgcacggtcacctcatccccatggtcgatct 134 Query: 162 cgcgcgcctcctcgc 176 |||| |||||||||| Sbjct: 135 cgcgggcctcctcgc 149
>ref|XM_464571.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1527 Score = 77.8 bits (39), Expect = 3e-11 Identities = 69/79 (87%) Strand = Plus / Plus Query: 99 gccgccgcacttcgtcttggtccctcttgcggcgcacggccatctcatcccaatggtcga 158 |||||||||||||||| | ||||| || ||||||| ||||| |||||| |||||||| Sbjct: 42 gccgccgcacttcgtcatcgtcccctttccggcgcagggccacaccatccccatggtcga 101 Query: 159 cctcgcgcgcctcctcgcg 177 ||||||||||||||||||| Sbjct: 102 cctcgcgcgcctcctcgcg 120 Score = 60.0 bits (30), Expect = 8e-06 Identities = 84/98 (85%), Gaps = 3/98 (3%) Strand = Plus / Plus Query: 445 agctgcatcatctccgactggtgtaactcgtggacagccggcgtcgc-cgcttgcctcgg 503 |||||||||||||| ||||||| ||||||||||| |||||||| || ||| || ||| Sbjct: 388 agctgcatcatctctgactggtccaactcgtggacggccggcgtggcgcgc-cgcgccgg 446 Query: 504 catcccgcggctgttcttcca-gggccgtcgtgcttct 540 | | ||||||||||||||||| || ||||||||||||| Sbjct: 447 cgtgccgcggctgttcttccatggcccgtcgtgcttct 484
>dbj|AP003974.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1003_F05 Length = 147472 Score = 77.8 bits (39), Expect = 3e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 99 gccgccgcacttcgtcttggtccctcttgcggcgcacggccatctcatcccaatggtcga 158 |||||||||||||||| | ||||| || ||||||| ||||| |||||| |||||||| Sbjct: 38753 gccgccgcacttcgtcatcgtcccctttccggcgcagggccacaccatccccatggtcga 38694 Query: 159 cctcgcgcgcctcctcgcg 177 ||||||||||||||||||| Sbjct: 38693 cctcgcgcgcctcctcgcg 38675 Score = 71.9 bits (36), Expect = 2e-09 Identities = 85/100 (85%), Gaps = 1/100 (1%) Strand = Plus / Plus Query: 442 ccgagctgcatcatctccgactggtgtaactcgtggacagccggcgtcgccgcttgcctc 501 ||||||||| ||||||||||||||| ||| ||||||| |||||||| || || || Sbjct: 28016 ccgagctgcgtcatctccgactggtccaacccgtggacggccggcgtggcgagccgcgtc 28075 Query: 502 ggcatcccgcggctgttcttcca-gggccgtcgtgcttct 540 ||| ||||||||||||||||||| || ||||||||||||| Sbjct: 28076 ggcgtcccgcggctgttcttccatggcccgtcgtgcttct 28115 Score = 60.0 bits (30), Expect = 8e-06 Identities = 84/98 (85%), Gaps = 3/98 (3%) Strand = Plus / Minus Query: 445 agctgcatcatctccgactggtgtaactcgtggacagccggcgtcgc-cgcttgcctcgg 503 |||||||||||||| ||||||| ||||||||||| |||||||| || ||| || ||| Sbjct: 38407 agctgcatcatctctgactggtccaactcgtggacggccggcgtggcgcgc-cgcgccgg 38349 Query: 504 catcccgcggctgttcttcca-gggccgtcgtgcttct 540 | | ||||||||||||||||| || ||||||||||||| Sbjct: 38348 cgtgccgcggctgttcttccatggcccgtcgtgcttct 38311 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 145 atcccaatggtcgacctcgcgcgcctcctcgcg 177 ||||| ||||||||||||||||||||||||||| Sbjct: 27719 atccccatggtcgacctcgcgcgcctcctcgcg 27751
>dbj|AP005917.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0235A04 Length = 23787 Score = 73.8 bits (37), Expect = 5e-10 Identities = 88/101 (87%), Gaps = 3/101 (2%) Strand = Plus / Minus Query: 442 ccgagctgcatcatctccgactggtgtaactcgtggacagccggcgtcgc-cgcttgcct 500 ||||||||||||||||||||||||| ||||||||||| |||||||| || ||| || Sbjct: 8992 ccgagctgcatcatctccgactggtccaactcgtggacggccggcgtggcgcgc-cgcgc 8934 Query: 501 cggcatcccgcggctgttcttcca-gggccgtcgtgcttct 540 |||| | ||||||||||||||||| || ||||||||||||| Sbjct: 8933 cggcgtgccgcggctgttcttccatggcccgtcgtgcttct 8893 Score = 63.9 bits (32), Expect = 5e-07 Identities = 70/80 (87%), Gaps = 2/80 (2%) Strand = Plus / Minus Query: 99 gccgccgcacttcgtcttggtccctcttgc-ggcgcacggccatctcatcccaatggtcg 157 ||||||||| |||||| | ||||| ||||| |||||| ||||| |||||| ||||||| Sbjct: 9335 gccgccgcatttcgtcatcgtccc-cttgccggcgcagggccacaccatccccatggtcg 9277 Query: 158 acctcgcgcgcctcctcgcg 177 |||||||||||||||||||| Sbjct: 9276 acctcgcgcgcctcctcgcg 9257
>ref|XM_464569.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1929 Score = 71.9 bits (36), Expect = 2e-09 Identities = 85/100 (85%), Gaps = 1/100 (1%) Strand = Plus / Plus Query: 442 ccgagctgcatcatctccgactggtgtaactcgtggacagccggcgtcgccgcttgcctc 501 ||||||||| ||||||||||||||| ||| ||||||| |||||||| || || || Sbjct: 455 ccgagctgcgtcatctccgactggtccaacccgtggacggccggcgtggcgagccgcgtc 514 Query: 502 ggcatcccgcggctgttcttcca-gggccgtcgtgcttct 540 ||| ||||||||||||||||||| || ||||||||||||| Sbjct: 515 ggcgtcccgcggctgttcttccatggcccgtcgtgcttct 554 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 145 atcccaatggtcgacctcgcgcgcctcctcgcg 177 ||||| ||||||||||||||||||||||||||| Sbjct: 158 atccccatggtcgacctcgcgcgcctcctcgcg 190
>dbj|AK119766.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-D06, full insert sequence Length = 1929 Score = 71.9 bits (36), Expect = 2e-09 Identities = 85/100 (85%), Gaps = 1/100 (1%) Strand = Plus / Plus Query: 442 ccgagctgcatcatctccgactggtgtaactcgtggacagccggcgtcgccgcttgcctc 501 ||||||||| ||||||||||||||| ||| ||||||| |||||||| || || || Sbjct: 455 ccgagctgcgtcatctccgactggtccaacccgtggacggccggcgtggcgagccgcgtc 514 Query: 502 ggcatcccgcggctgttcttcca-gggccgtcgtgcttct 540 ||| ||||||||||||||||||| || ||||||||||||| Sbjct: 515 ggcgtcccgcggctgttcttccatggcccgtcgtgcttct 554 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 145 atcccaatggtcgacctcgcgcgcctcctcgcg 177 ||||| ||||||||||||||||||||||||||| Sbjct: 158 atccccatggtcgacctcgcgcgcctcctcgcg 190
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 128 cggcgcacggccatctcatcccaatggtcgacctcgcgcgcctcctcgcgtcccg 182 ||||||| ||||| |||||||| ||| ||||||| | ||||||||||||||||| Sbjct: 10004067 cggcgcagggccacctcatcccgatgctcgaccttgtccgcctcctcgcgtcccg 10004013 Score = 44.1 bits (22), Expect = 0.48 Identities = 49/58 (84%) Strand = Plus / Plus Query: 128 cggcgcacggccatctcatcccaatggtcgacctcgcgcgcctcctcgcgtcccgcgg 185 ||||||| ||||| |||||||| | ||||| ||| |||||||||||||||||||| Sbjct: 9932004 cggcgcagggccacctcatcccgttcatcgacatcgtccgcctcctcgcgtcccgcgg 9932061 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 166 cgcctcctcgcgtcccgcggtgcg 189 ||||||| |||||||||||||||| Sbjct: 5803268 cgcctccgcgcgtcccgcggtgcg 5803291
>dbj|AP006050.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0021H05 Length = 159111 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 128 cggcgcacggccatctcatcccaatggtcgacctcgcgcgcctcctcgcgtcccg 182 ||||||| ||||| |||||||| ||| ||||||| | ||||||||||||||||| Sbjct: 77632 cggcgcagggccacctcatcccgatgctcgaccttgtccgcctcctcgcgtcccg 77578 Score = 44.1 bits (22), Expect = 0.48 Identities = 49/58 (84%) Strand = Plus / Plus Query: 128 cggcgcacggccatctcatcccaatggtcgacctcgcgcgcctcctcgcgtcccgcgg 185 ||||||| ||||| |||||||| | ||||| ||| |||||||||||||||||||| Sbjct: 5569 cggcgcagggccacctcatcccgttcatcgacatcgtccgcctcctcgcgtcccgcgg 5626
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 156 cgacctcgcgcgcctcctcgcgtcccgcgg 185 |||||||||||||||| ||||||||||||| Sbjct: 5817257 cgacctcgcgcgcctcttcgcgtcccgcgg 5817286
>gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAa0021B21, from chromosome 3, complete sequence Length = 139208 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 156 cgacctcgcgcgcctcctcgcgtcccgcgg 185 |||||||||||||||| ||||||||||||| Sbjct: 46087 cgacctcgcgcgcctcttcgcgtcccgcgg 46116
>gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0021B21, from chromosome 3, complete sequence Length = 166777 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 156 cgacctcgcgcgcctcctcgcgtcccgcgg 185 |||||||||||||||| ||||||||||||| Sbjct: 13914 cgacctcgcgcgcctcttcgcgtcccgcgg 13885
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 156 cgacctcgcgcgcctcctcgcgtcccgcgg 185 |||||||||||||||| ||||||||||||| Sbjct: 5816470 cgacctcgcgcgcctcttcgcgtcccgcgg 5816499
>ref|NM_195166.1| Oryza sativa (japonica cultivar-group) putative glucosyltransferase (OSJNBa0047G15.18), mRNA Length = 1587 Score = 48.1 bits (24), Expect = 0.030 Identities = 42/48 (87%) Strand = Plus / Plus Query: 129 ggcgcacggccatctcatcccaatggtcgacctcgcgcgcctcctcgc 176 |||||| ||||| ||||||| ||||| ||||| |||||||||||||| Sbjct: 54 ggcgcagggccacatcatccctatggtggacctggcgcgcctcctcgc 101
>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29 Length = 300100 Score = 48.1 bits (24), Expect = 0.030 Identities = 24/24 (100%) Strand = Plus / Minus Query: 269 agctcctgctggaggtcgtcgagc 292 |||||||||||||||||||||||| Sbjct: 286939 agctcctgctggaggtcgtcgagc 286916
>gb|AC083944.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0047G15, from chromosome 10, complete sequence Length = 166474 Score = 48.1 bits (24), Expect = 0.030 Identities = 42/48 (87%) Strand = Plus / Plus Query: 129 ggcgcacggccatctcatcccaatggtcgacctcgcgcgcctcctcgc 176 |||||| ||||| ||||||| ||||| ||||| |||||||||||||| Sbjct: 68653 ggcgcagggccacatcatccctatggtggacctggcgcgcctcctcgc 68700
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 48.1 bits (24), Expect = 0.030 Identities = 42/48 (87%) Strand = Plus / Plus Query: 129 ggcgcacggccatctcatcccaatggtcgacctcgcgcgcctcctcgc 176 |||||| ||||| ||||||| ||||| ||||| |||||||||||||| Sbjct: 5063352 ggcgcagggccacatcatccctatggtggacctggcgcgcctcctcgc 5063399
>dbj|AK066178.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013058P11, full insert sequence Length = 1717 Score = 48.1 bits (24), Expect = 0.030 Identities = 42/48 (87%) Strand = Plus / Plus Query: 129 ggcgcacggccatctcatcccaatggtcgacctcgcgcgcctcctcgc 176 |||||| ||||| ||||||| ||||| ||||| |||||||||||||| Sbjct: 80 ggcgcagggccacatcatccctatggtggacctggcgcgcctcctcgc 127
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 48.1 bits (24), Expect = 0.030 Identities = 42/48 (87%) Strand = Plus / Plus Query: 129 ggcgcacggccatctcatcccaatggtcgacctcgcgcgcctcctcgc 176 |||||| ||||| ||||||| ||||| ||||| |||||||||||||| Sbjct: 5064139 ggcgcagggccacatcatccctatggtggacctggcgcgcctcctcgc 5064186
>ref|XM_369022.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG00222.4) partial mRNA Length = 1959 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 57 ggcgccaacccagcaggcactcgccgc 83 |||||||||||||||| |||||||||| Sbjct: 877 ggcgccaacccagcagacactcgccgc 903
>dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0063H02 Length = 152326 Score = 44.1 bits (22), Expect = 0.48 Identities = 49/58 (84%) Strand = Plus / Plus Query: 128 cggcgcacggccatctcatcccaatggtcgacctcgcgcgcctcctcgcgtcccgcgg 185 ||||||| ||||| |||||||| | ||||| ||| |||||||||||||||||||| Sbjct: 128639 cggcgcagggccacctcatcccgttcatcgacatcgtccgcctcctcgcgtcccgcgg 128696
>ref|NM_191604.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1810 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 cgagctgcatcatctccgac 462 |||||||||||||||||||| Sbjct: 578 cgagctgcatcatctccgac 597
>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome Length = 2575032 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 ccatctcatcccaatggtcg 157 |||||||||||||||||||| Sbjct: 316934 ccatctcatcccaatggtcg 316953
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 480 agccggcgtcgccgcttgcc 499 |||||||||||||||||||| Sbjct: 4746013 agccggcgtcgccgcttgcc 4745994
>gb|AC021224.7|AC021224 Homo sapiens chromosome 18, clone RP11-158N19, complete sequence Length = 151794 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 caacccagcaggcactcgcc 81 |||||||||||||||||||| Sbjct: 73969 caacccagcaggcactcgcc 73950
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 cgagctgcatcatctccgac 462 |||||||||||||||||||| Sbjct: 3917492 cgagctgcatcatctccgac 3917511
>gb|AY900632.1| Drosophila buzzatii clone BAC 40C11, complete sequence Length = 132938 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 474 gtggacagccggcgtcgccg 493 |||||||||||||||||||| Sbjct: 88168 gtggacagccggcgtcgccg 88149
>dbj|AP002523.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0013F10 Length = 163095 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 cgagctgcatcatctccgac 462 |||||||||||||||||||| Sbjct: 39396 cgagctgcatcatctccgac 39415
>dbj|AP003458.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0701E03 Length = 183245 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 166 cgcctcctcgcgtcccgcggtgcg 189 ||||||| |||||||||||||||| Sbjct: 118797 cgcctccgcgcgtcccgcggtgcg 118820
>dbj|AP003525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0537F07 Length = 147724 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 166 cgcctcctcgcgtcccgcggtgcg 189 ||||||| |||||||||||||||| Sbjct: 4043 cgcctccgcgcgtcccgcggtgcg 4066
>dbj|AK103303.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125D02, full insert sequence Length = 1809 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 cgagctgcatcatctccgac 462 |||||||||||||||||||| Sbjct: 577 cgagctgcatcatctccgac 596 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,827,074 Number of Sequences: 3902068 Number of extensions: 2827074 Number of successful extensions: 55763 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55387 Number of HSP's gapped (non-prelim): 364 length of query: 548 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 525 effective length of database: 17,143,297,704 effective search space: 9000231294600 effective search space used: 9000231294600 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
