ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart25f08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4,... 178 7e-42
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 178 7e-42
3ref|XM_473493.1| Oryza sativa (japonica cultivar-group), predic... 176 3e-41
4dbj|AK068927.1| Oryza sativa (japonica cultivar-group) cDNA clon... 170 2e-39
5gb|BT019239.1| Zea mays clone Contig912.F mRNA sequence 131 2e-27
6gb|AC140005.2| Oryza sativa (japonica cultivar-group) chromosome... 74 3e-10
7ref|XM_470181.1| Oryza sativa (japonica cultivar-group), predic... 74 3e-10
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 74 3e-10
9gb|AC098693.2| Oryza sativa (japonica cultivar-group) chromosome... 74 3e-10
10dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 74 3e-10
11gb|AC121363.2| Oryza sativa (japonica cultivar-group) chromosome... 60 5e-06
12gb|AC104272.5| Oryza sativa (japonica cultivar-group) chromosome... 60 5e-06
13dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 60 5e-06
14ref|XM_469702.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.28
15gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 44 0.28
16gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 44 0.28
17gb|AC092558.4| Oryza sativa chromosome 3 BAC OSJNBb0036F07 genom... 44 0.28
18ref|XM_466529.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.1
19emb|BX571869.1| Photorhabdus luminescens subsp. laumondii TTO1 c... 42 1.1
20gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 42 1.1
21dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
22dbj|AP004023.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
23dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 1.1
24gb|BT024049.1| Zea mays clone EL01N0436D10 mRNA sequence 42 1.1
25gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 40 4.3
26gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 4.3
27gb|AE008900.1| Salmonella typhimurium LT2, section 204 of 220 of... 40 4.3
28emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genom... 40 4.3
29emb|AL731597.3|OSJN00237 Oryza sativa genomic DNA, chromosome 4,... 40 4.3
30emb|AL731596.3|OSJN00236 Oryza sativa genomic DNA, chromosome 4,... 40 4.3
31emb|AL627282.1| Salmonella enterica serovar Typhi (Salmonella ty... 40 4.3
32gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 4.3
33gb|AC087726.36| Chlamydomonas reinhardtii clone cr-40a20, comple... 40 4.3
34gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 4.3
35gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 4.3
36gb|CP000026.1| Salmonella enterica subsp. enterica serovar Parat... 40 4.3
37dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 4.3
38ref|NM_208925.1| Eremothecium gossypii ACR170Cp (ACR170C), mRNA 40 4.3
39gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 40 4.3
40gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi... 40 4.3
41gb|AE017220.1| Salmonella enterica subsp. enterica serovar Chole... 40 4.3
42gb|DQ149730.1| Uncultured soil bacterium clone CT0.35 ribulose-1... 40 4.3 
>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11,
             complete sequence
          Length = 147806

 Score =  178 bits (90), Expect = 7e-42
 Identities = 126/138 (91%)
 Strand = Plus / Plus

                                                                         
Query: 15    gatgccgaagaatatggccgtcaactccaaggcggaggccgcccgcgagcgccgctccgc 74
             |||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||| 
Sbjct: 95462 gatgccgaagaagatgggcgtcaactccaaggcggaggcggcccgcgagcgccgctccgt 95521

                                                                         
Query: 75    cgaggagtcggaccgccgccagcgcgccgagcgcgccaaggaggaggagtactggcgcga 134
             || |||| | ||||||||  | |||| |||||||||||||||||||||||||||||||||
Sbjct: 95522 cgcggaggccgaccgccgggaccgcgtcgagcgcgccaaggaggaggagtactggcgcga 95581

                               
Query: 135   ggccgagggctccaagtc 152
             |||||||||| |||||||
Sbjct: 95582 ggccgagggccccaagtc 95599



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                         
Query: 268   tccaagacggacgcccgcaaggacagccgcgtcggcgccccggcccccaaggtcaccgag 327
             |||||||||| ||||||||||| |  |||||||||||||||||| |||||||||||||||
Sbjct: 95718 tccaagacggccgcccgcaaggcctcccgcgtcggcgccccggcgcccaaggtcaccgag 95777

              
Query: 328   g 328
             |
Sbjct: 95778 g 95778
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  178 bits (90), Expect = 7e-42
 Identities = 126/138 (91%)
 Strand = Plus / Plus

                                                                            
Query: 15       gatgccgaagaatatggccgtcaactccaaggcggaggccgcccgcgagcgccgctccgc 74
                |||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||| 
Sbjct: 28088236 gatgccgaagaagatgggcgtcaactccaaggcggaggcggcccgcgagcgccgctccgt 28088295

                                                                            
Query: 75       cgaggagtcggaccgccgccagcgcgccgagcgcgccaaggaggaggagtactggcgcga 134
                || |||| | ||||||||  | |||| |||||||||||||||||||||||||||||||||
Sbjct: 28088296 cgcggaggccgaccgccgggaccgcgtcgagcgcgccaaggaggaggagtactggcgcga 28088355

                                  
Query: 135      ggccgagggctccaagtc 152
                |||||||||| |||||||
Sbjct: 28088356 ggccgagggccccaagtc 28088373



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                            
Query: 268      tccaagacggacgcccgcaaggacagccgcgtcggcgccccggcccccaaggtcaccgag 327
                |||||||||| ||||||||||| |  |||||||||||||||||| |||||||||||||||
Sbjct: 28088492 tccaagacggccgcccgcaaggcctcccgcgtcggcgccccggcgcccaaggtcaccgag 28088551

                 
Query: 328      g 328
                |
Sbjct: 28088552 g 28088552



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 10       ctcgagatgccgaagaatatggccgtcaactccaag 45
                |||| ||||| |||||| |||||| |||||||||||
Sbjct: 13939616 ctcgtgatgctgaagaagatggccatcaactccaag 13939581
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>ref|XM_473493.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 717

 Score =  176 bits (89), Expect = 3e-41
 Identities = 125/137 (91%)
 Strand = Plus / Plus

                                                                       
Query: 16  atgccgaagaatatggccgtcaactccaaggcggaggccgcccgcgagcgccgctccgcc 75
           ||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 1   atgccgaagaagatgggcgtcaactccaaggcggaggcggcccgcgagcgccgctccgtc 60

                                                                       
Query: 76  gaggagtcggaccgccgccagcgcgccgagcgcgccaaggaggaggagtactggcgcgag 135
           | |||| | ||||||||  | |||| ||||||||||||||||||||||||||||||||||
Sbjct: 61  gcggaggccgaccgccgggaccgcgtcgagcgcgccaaggaggaggagtactggcgcgag 120

                            
Query: 136 gccgagggctccaagtc 152
           ||||||||| |||||||
Sbjct: 121 gccgagggccccaagtc 137



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                       
Query: 268 tccaagacggacgcccgcaaggacagccgcgtcggcgccccggcccccaaggtcaccgag 327
           |||||||||| ||||||||||| |  |||||||||||||||||| |||||||||||||||
Sbjct: 256 tccaagacggccgcccgcaaggcctcccgcgtcggcgccccggcgcccaaggtcaccgag 315

            
Query: 328 g 328
           |
Sbjct: 316 g 316
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>dbj|AK068927.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170J12, full
           insert sequence
          Length = 1043

 Score =  170 bits (86), Expect = 2e-39
 Identities = 125/138 (90%)
 Strand = Plus / Plus

                                                                       
Query: 15  gatgccgaagaatatggccgtcaactccaaggcggaggccgcccgcgagcgccgctccgc 74
           |||| ||||||| |||| ||||||||||||||||||||| ||||||||||||||||||| 
Sbjct: 91  gatggcgaagaagatgggcgtcaactccaaggcggaggcggcccgcgagcgccgctccgt 150

                                                                       
Query: 75  cgaggagtcggaccgccgccagcgcgccgagcgcgccaaggaggaggagtactggcgcga 134
           || |||| | ||||||||  | |||| |||||||||||||||||||||||||||||||||
Sbjct: 151 cgcggaggccgaccgccgggaccgcgtcgagcgcgccaaggaggaggagtactggcgcga 210

                             
Query: 135 ggccgagggctccaagtc 152
           |||||||||| |||||||
Sbjct: 211 ggccgagggccccaagtc 228



 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                       
Query: 268 tccaagacggacgcccgcaaggacagccgcgtcggcgccccggcccccaaggtcaccgag 327
           |||||||||| |||| |||||| |  |||||||||||||||||| |||||||||||||||
Sbjct: 347 tccaagacggccgccagcaaggcctcccgcgtcggcgccccggcgcccaaggtcaccgag 406

            
Query: 328 g 328
           |
Sbjct: 407 g 407
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>gb|BT019239.1| Zea mays clone Contig912.F mRNA sequence
          Length = 1154

 Score =  131 bits (66), Expect = 2e-27
 Identities = 120/138 (86%)
 Strand = Plus / Minus

                                                                        
Query: 15   gatgccgaagaatatggccgtcaactccaaggcggaggccgcccgcgagcgccgctccgc 74
            |||||||||||| ||||  |||||||||||||||||||| |||||||| |||||||||||
Sbjct: 1068 gatgccgaagaagatgggtgtcaactccaaggcggaggcggcccgcgaccgccgctccgc 1009

                                                                        
Query: 75   cgaggagtcggaccgccgccagcgcgccgagcgcgccaaggaggaggagtactggcgcga 134
            || |||| | ||||||||| | |||   |||||||||||||||||| ||||||||  |||
Sbjct: 1008 cgcggaggccgaccgccgcgaccgccaggagcgcgccaaggaggagcagtactgggccga 949

                              
Query: 135  ggccgagggctccaagtc 152
            ||| |||||| |||||||
Sbjct: 948  ggctgagggccccaagtc 931
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>gb|AC140005.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1004C08,
             complete sequence
          Length = 138054

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 112/137 (81%)
 Strand = Plus / Plus

                                                                         
Query: 16    atgccgaagaatatggccgtcaactccaaggcggaggccgcccgcgagcgccgctccgcc 75
             ||||||||||| ||||  |||||| ||||||||||||| || |||||||| ||   ||||
Sbjct: 20761 atgccgaagaagatgggagtcaacaccaaggcggaggcggcgcgcgagcgacgaagcgcc 20820

                                                                         
Query: 76    gaggagtcggaccgccgccagcgcgccgagcgcgccaaggaggaggagtactggcgcgag 135
             |  ||| |||| |||||| | |||| ||  ||||||||||||||||  |||||||  | |
Sbjct: 20821 gccgaggcggatcgccgcgaccgcgacgctcgcgccaaggaggaggcctactggcaggcg 20880

                              
Query: 136   gccgagggctccaagtc 152
             ||||||||| |||||||
Sbjct: 20881 gccgagggccccaagtc 20897
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>ref|XM_470181.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 699

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 112/137 (81%)
 Strand = Plus / Plus

                                                                       
Query: 16  atgccgaagaatatggccgtcaactccaaggcggaggccgcccgcgagcgccgctccgcc 75
           ||||||||||| ||||  |||||| ||||||||||||| || |||||||| ||   ||||
Sbjct: 1   atgccgaagaagatgggagtcaacaccaaggcggaggcggcgcgcgagcgacgaagcgcc 60

                                                                       
Query: 76  gaggagtcggaccgccgccagcgcgccgagcgcgccaaggaggaggagtactggcgcgag 135
           |  ||| |||| |||||| | |||| ||  ||||||||||||||||  |||||||  | |
Sbjct: 61  gccgaggcggatcgccgcgaccgcgacgctcgcgccaaggaggaggcctactggcaggcg 120

                            
Query: 136 gccgagggctccaagtc 152
           ||||||||| |||||||
Sbjct: 121 gccgagggccccaagtc 137
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 112/137 (81%)
 Strand = Plus / Plus

                                                                           
Query: 16      atgccgaagaatatggccgtcaactccaaggcggaggccgcccgcgagcgccgctccgcc 75
               ||||||||||| ||||  |||||| ||||||||||||| || |||||||| ||   ||||
Sbjct: 1795122 atgccgaagaagatgggagtcaacaccaaggcggaggcggcgcgcgagcgacgaagcgcc 1795181

                                                                           
Query: 76      gaggagtcggaccgccgccagcgcgccgagcgcgccaaggaggaggagtactggcgcgag 135
               |  ||| |||| |||||| | |||| ||  ||||||||||||||||  |||||||  | |
Sbjct: 1795182 gccgaggcggatcgccgcgaccgcgacgctcgcgccaaggaggaggcctactggcaggcg 1795241

                                
Query: 136     gccgagggctccaagtc 152
               ||||||||| |||||||
Sbjct: 1795242 gccgagggccccaagtc 1795258



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Minus

                                                      
Query: 116      aggaggagtactgg-cgcgaggccgagggctccaagtc 152
                |||||||||| ||| |||||||||||| ||||||||||
Sbjct: 30310675 aggaggagtattgggcgcgaggccgagagctccaagtc 30310638



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 15       gatgccgaagaatatggccgtcaactcc 42
                |||||||||||| |||| ||||||||||
Sbjct: 30310776 gatgccgaagaagatggtcgtcaactcc 30310749
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>gb|AC098693.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1004C08,
             complete sequence
          Length = 133090

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 112/137 (81%)
 Strand = Plus / Minus

                                                                         
Query: 16    atgccgaagaatatggccgtcaactccaaggcggaggccgcccgcgagcgccgctccgcc 75
             ||||||||||| ||||  |||||| ||||||||||||| || |||||||| ||   ||||
Sbjct: 39240 atgccgaagaagatgggagtcaacaccaaggcggaggcggcgcgcgagcgacgaagcgcc 39181

                                                                         
Query: 76    gaggagtcggaccgccgccagcgcgccgagcgcgccaaggaggaggagtactggcgcgag 135
             |  ||| |||| |||||| | |||| ||  ||||||||||||||||  |||||||  | |
Sbjct: 39180 gccgaggcggatcgccgcgaccgcgacgctcgcgccaaggaggaggcctactggcaggcg 39121

                              
Query: 136   gccgagggctccaagtc 152
             ||||||||| |||||||
Sbjct: 39120 gccgagggccccaagtc 39104
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 112/137 (81%)
 Strand = Plus / Plus

                                                                           
Query: 16      atgccgaagaatatggccgtcaactccaaggcggaggccgcccgcgagcgccgctccgcc 75
               ||||||||||| ||||  |||||| ||||||||||||| || |||||||| ||   ||||
Sbjct: 1795120 atgccgaagaagatgggagtcaacaccaaggcggaggcggcgcgcgagcgacgaagcgcc 1795179

                                                                           
Query: 76      gaggagtcggaccgccgccagcgcgccgagcgcgccaaggaggaggagtactggcgcgag 135
               |  ||| |||| |||||| | |||| ||  ||||||||||||||||  |||||||  | |
Sbjct: 1795180 gccgaggcggatcgccgcgaccgcgacgctcgcgccaaggaggaggcctactggcaggcg 1795239

                                
Query: 136     gccgagggctccaagtc 152
               ||||||||| |||||||
Sbjct: 1795240 gccgagggccccaagtc 1795256



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Minus

                                                      
Query: 116      aggaggagtactgg-cgcgaggccgagggctccaagtc 152
                |||||||||| ||| |||||||||||| ||||||||||
Sbjct: 30402097 aggaggagtattgggcgcgaggccgagagctccaagtc 30402060



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 15       gatgccgaagaatatggccgtcaactcc 42
                |||||||||||| |||| ||||||||||
Sbjct: 30402198 gatgccgaagaagatggtcgtcaactcc 30402171
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>gb|AC121363.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0036C12,
              complete sequence
          Length = 145517

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                            
Query: 107    gcgccaaggaggaggagtactggcgcgaggccgagggctccaagtc 152
              ||||||||||||||||||||| |||| ||||| ||||| |||||||
Sbjct: 122230 gcgccaaggaggaggagtactagcgcaaggccaagggccccaagtc 122275
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>gb|AC104272.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1045_C06,
             complete sequence
          Length = 143130

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                           
Query: 107   gcgccaaggaggaggagtactggcgcgaggccgagggctccaagtc 152
             ||||||||||||||||||||| |||| ||||| ||||| |||||||
Sbjct: 10616 gcgccaaggaggaggagtactagcgcaaggccaagggccccaagtc 10661
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                              
Query: 107      gcgccaaggaggaggagtactggcgcgaggccgagggctccaagtc 152
                ||||||||||||||||||||| |||| ||||| ||||| |||||||
Sbjct: 16798120 gcgccaaggaggaggagtactagcgcaaggccaagggccccaagtc 16798165
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>ref|XM_469702.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 351

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Plus

                                                 
Query: 116 aggaggagtactgg-cgcgaggccgagggctccaagtc 152
           |||||||||| ||| |||||||||||| ||||||||||
Sbjct: 101 aggaggagtattgggcgcgaggccgagagctccaagtc 138
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 84     ggaccgccgccagcgcgccgag 105
              ||||||||||||||||||||||
Sbjct: 569039 ggaccgccgccagcgcgccgag 569060



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 89      gccgccagcgcgccgagcgc 108
               ||||||||||||||||||||
Sbjct: 2088361 gccgccagcgcgccgagcgc 2088380
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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 86     accgccgccagcgcgccgagcgcgcc 111
              ||||||||||| ||||||||||||||
Sbjct: 178933 accgccgccagggcgccgagcgcgcc 178908
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>gb|AC092558.4| Oryza sativa chromosome 3 BAC OSJNBb0036F07 genomic sequence, complete
              sequence
          Length = 130359

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Minus

                                                    
Query: 116    aggaggagtactgg-cgcgaggccgagggctccaagtc 152
              |||||||||| ||| |||||||||||| ||||||||||
Sbjct: 102355 aggaggagtattgggcgcgaggccgagagctccaagtc 102318



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 15     gatgccgaagaatatggccgtcaactcc 42
              |||||||||||| |||| ||||||||||
Sbjct: 102456 gatgccgaagaagatggtcgtcaactcc 102429
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>ref|XM_466529.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1560

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 99  cgccgagcgcgccaaggaggaggag 123
           ||||||||||||| |||||||||||
Sbjct: 51  cgccgagcgcgccgaggaggaggag 75
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>emb|BX571869.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
              11/17
          Length = 349284

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 86     accgccgccagcgcgccgagc 106
              |||||||||||||||||||||
Sbjct: 173545 accgccgccagcgcgccgagc 173565
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 85      gaccgccgccagcgcgccgag 105
               |||||||||||||||||||||
Sbjct: 4180464 gaccgccgccagcgcgccgag 4180444
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 99       cgccgagcgcgccaaggaggaggag 123
                ||||||||||||| |||||||||||
Sbjct: 23135782 cgccgagcgcgccgaggaggaggag 23135806
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>dbj|AP004023.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1126_D09
          Length = 138615

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 99     cgccgagcgcgccaaggaggaggag 123
              ||||||||||||| |||||||||||
Sbjct: 102820 cgccgagcgcgccgaggaggaggag 102844
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 49      gaggccgcccgcgagcgccgc 69
               |||||||||||||||||||||
Sbjct: 6511828 gaggccgcccgcgagcgccgc 6511808
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>gb|BT024049.1| Zea mays clone EL01N0436D10 mRNA sequence
          Length = 1355

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 99  cgccgagcgcgccaaggaggaggag 123
           |||||||| ||||||||||||||||
Sbjct: 548 cgccgagcccgccaaggaggaggag 572
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 91      cgccagcgcgccgagcgcgc 110
               ||||||||||||||||||||
Sbjct: 2466774 cgccagcgcgccgagcgcgc 2466793
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 87      ccgccgccagcgcgccgagcgcgc 110
               |||||||||||| |||||||||||
Sbjct: 2661026 ccgccgccagcgggccgagcgcgc 2661003
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>gb|AE008900.1| Salmonella typhimurium LT2, section 204 of 220 of the complete genome
          Length = 21498

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    gaccgccgccagcgcgccga 104
             ||||||||||||||||||||
Sbjct: 16901 gaccgccgccagcgcgccga 16882
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>emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genome; segment 8/16
          Length = 349640

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 276    ggacgcccgcaaggacagccgcgtcggc 303
              |||||||||||||| | |||||||||||
Sbjct: 334949 ggacgcccgcaaggtcggccgcgtcggc 334976
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>emb|AL731597.3|OSJN00237 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0023J03,
              complete sequence
          Length = 175555

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                  
Query: 10     ctcgagatgccgaagaatatggccgtcaactccaag 45
              |||| ||||| |||||| |||||| |||||||||||
Sbjct: 153279 ctcgtgatgctgaagaagatggccatcaactccaag 153244
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>emb|AL731596.3|OSJN00236 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0024J22,
             complete sequence
          Length = 174430

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 10    ctcgagatgccgaagaatatggccgtcaactccaag 45
             |||| ||||| |||||| |||||| |||||||||||
Sbjct: 53496 ctcgtgatgctgaagaagatggccatcaactccaag 53461
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>emb|AL627282.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
              complete chromosome; segment 18/20
          Length = 234050

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 85     gaccgccgccagcgcgccga 104
              ||||||||||||||||||||
Sbjct: 125386 gaccgccgccagcgcgccga 125367
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 46      gcggaggccgcccgcgagcgccgc 69
               |||| |||||||||||||||||||
Sbjct: 3898810 gcggcggccgcccgcgagcgccgc 3898833
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>gb|AC087726.36| Chlamydomonas reinhardtii clone cr-40a20, complete sequence
          Length = 168794

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 104    agcgcgccaaggaggaggag 123
              ||||||||||||||||||||
Sbjct: 116505 agcgcgccaaggaggaggag 116486
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>gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome III,
              complete sequence
          Length = 907057

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 87     ccgccgccagcgcgccgagc 106
              ||||||||||||||||||||
Sbjct: 654182 ccgccgccagcgcgccgagc 654201
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 54      cgcccgcgagcgccgctccg 73
               ||||||||||||||||||||
Sbjct: 1669953 cgcccgcgagcgccgctccg 1669934
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>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 85      gaccgccgccagcgcgccga 104
               ||||||||||||||||||||
Sbjct: 4270176 gaccgccgccagcgcgccga 4270157
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 89      gccgccagcgcgccgagcgc 108
               ||||||||||||||||||||
Sbjct: 5805820 gccgccagcgcgccgagcgc 5805839
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>ref|NM_208925.1| Eremothecium gossypii ACR170Cp (ACR170C), mRNA
          Length = 870

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 87  ccgccgccagcgcgccgagc 106
           ||||||||||||||||||||
Sbjct: 199 ccgccgccagcgcgccgagc 180
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 102     cgagcgcgccaaggaggagg 121
               ||||||||||||||||||||
Sbjct: 2077188 cgagcgcgccaaggaggagg 2077207
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>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 85      gaccgccgccagcgcgccga 104
               ||||||||||||||||||||
Sbjct: 4348036 gaccgccgccagcgcgccga 4348017
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>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
               complete genome
          Length = 4755700

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 85      gaccgccgccagcgcgccga 104
               ||||||||||||||||||||
Sbjct: 4452812 gaccgccgccagcgcgccga 4452793
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>gb|DQ149730.1| Uncultured soil bacterium clone CT0.35 ribulose-1,5-bisphosphate
           carboxylase/oxygenase large subunit (cbbL) gene, partial
           cds
          Length = 492

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 95  agcgcgccgagcgcgccaaggagg 118
           |||||||||||| |||||||||||
Sbjct: 239 agcgcgccgagctcgccaaggagg 262


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,931,501
Number of Sequences: 3902068
Number of extensions: 1931501
Number of successful extensions: 38527
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36795
Number of HSP's gapped (non-prelim): 1727
length of query: 328
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 306
effective length of database: 17,147,199,772
effective search space: 5247043130232
effective search space used: 5247043130232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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