ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart25f03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 248 bits (125), Expect = 2e-62 Identities = 188/209 (89%) Strand = Plus / Plus Query: 190 gggggcagcttcgagtgcaacatatgcttcgagctgccgcaggagcccatcgtcacactc 249 ||||| ||||||||||||||||||||||| ||||| ||||||||||| || ||||| ||| Sbjct: 27301035 gggggaagcttcgagtgcaacatatgctttgagcttccgcaggagcctattgtcacgctc 27301094 Query: 250 tgcggccacctcttctgctggccatgcctctacaagtggctgcacatccactcgcactcc 309 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 27301095 tgtggccacctcttctgctggccatgcctctacaagtggctgcacatccactcgcattca 27301154 Query: 310 cccgagtgccccgtctgcaaggccgtcgtcgaggaggacaagctcgtcccgctctacggc 369 || |||||||| ||||||||||| || ||||||||||| ||||| ||||| ||||| ||| Sbjct: 27301155 cctgagtgcccggtctgcaaggctgttgtcgaggaggataagcttgtccccctctatggc 27301214 Query: 370 cgtggcaaggaccgcgtcgaccccaggtc 398 ||||| |||||||| || ||||| ||||| Sbjct: 27301215 cgtggtaaggaccgtgttgacccaaggtc 27301243 Score = 73.8 bits (37), Expect = 6e-10 Identities = 105/127 (82%), Gaps = 3/127 (2%) Strand = Plus / Plus Query: 449 ggcccgccaccgccccgcaggcagaccccaacaaccacttccccaacgccaaccctaacc 508 |||| ||||| || |||||||| | || |||| |||||||||||| |||||||| |||| Sbjct: 27301291 ggcctgccacggctccgcaggccaatcctaacacccacttccccaatgccaaccccaacc 27301350 Query: 509 cctggttcatggggggaggcggcgtcccgctggccaacgcgcggtgggggaactacacat 568 | ||||||||||| ||| ||| |||| || ||||| || ||||||||||| ||||| | Sbjct: 27301351 cttggttcatgggtgga---ggcatcccactagccaatgcacggtgggggaattacacct 27301407 Query: 569 tctcggc 575 ||||||| Sbjct: 27301408 tctcggc 27301414
>dbj|AK099519.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013030E05, full insert sequence Length = 1092 Score = 248 bits (125), Expect = 2e-62 Identities = 188/209 (89%) Strand = Plus / Plus Query: 190 gggggcagcttcgagtgcaacatatgcttcgagctgccgcaggagcccatcgtcacactc 249 ||||| ||||||||||||||||||||||| ||||| ||||||||||| || ||||| ||| Sbjct: 146 gggggaagcttcgagtgcaacatatgctttgagcttccgcaggagcctattgtcacgctc 205 Query: 250 tgcggccacctcttctgctggccatgcctctacaagtggctgcacatccactcgcactcc 309 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 206 tgtggccacctcttctgctggccatgcctctacaagtggctgcacatccactcgcattca 265 Query: 310 cccgagtgccccgtctgcaaggccgtcgtcgaggaggacaagctcgtcccgctctacggc 369 || |||||||| ||||||||||| || ||||||||||| ||||| ||||| ||||| ||| Sbjct: 266 cctgagtgcccggtctgcaaggctgttgtcgaggaggataagcttgtccccctctatggc 325 Query: 370 cgtggcaaggaccgcgtcgaccccaggtc 398 ||||| |||||||| || ||||| ||||| Sbjct: 326 cgtggtaaggaccgtgttgacccaaggtc 354 Score = 73.8 bits (37), Expect = 6e-10 Identities = 105/127 (82%), Gaps = 3/127 (2%) Strand = Plus / Plus Query: 449 ggcccgccaccgccccgcaggcagaccccaacaaccacttccccaacgccaaccctaacc 508 |||| ||||| || |||||||| | || |||| |||||||||||| |||||||| |||| Sbjct: 402 ggcctgccacggctccgcaggccaatcctaacacccacttccccaatgccaaccccaacc 461 Query: 509 cctggttcatggggggaggcggcgtcccgctggccaacgcgcggtgggggaactacacat 568 | ||||||||||| ||| ||| |||| || ||||| || ||||||||||| ||||| | Sbjct: 462 cttggttcatgggtgga---ggcatcccactagccaatgcacggtgggggaattacacct 518 Query: 569 tctcggc 575 ||||||| Sbjct: 519 tctcggc 525
>dbj|AK062128.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-D12, full insert sequence Length = 1156 Score = 248 bits (125), Expect = 2e-62 Identities = 188/209 (89%) Strand = Plus / Plus Query: 190 gggggcagcttcgagtgcaacatatgcttcgagctgccgcaggagcccatcgtcacactc 249 ||||| ||||||||||||||||||||||| ||||| ||||||||||| || ||||| ||| Sbjct: 143 gggggaagcttcgagtgcaacatatgctttgagcttccgcaggagcctattgtcacgctc 202 Query: 250 tgcggccacctcttctgctggccatgcctctacaagtggctgcacatccactcgcactcc 309 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 203 tgtggccacctcttctgctggccatgcctctacaagtggctgcacatccactcgcattca 262 Query: 310 cccgagtgccccgtctgcaaggccgtcgtcgaggaggacaagctcgtcccgctctacggc 369 || |||||||| ||||||||||| || ||||||||||| ||||| ||||| ||||| ||| Sbjct: 263 cctgagtgcccggtctgcaaggctgttgtcgaggaggataagcttgtccccctctatggc 322 Query: 370 cgtggcaaggaccgcgtcgaccccaggtc 398 ||||| |||||||| || ||||| ||||| Sbjct: 323 cgtggtaaggaccgtgttgacccaaggtc 351 Score = 73.8 bits (37), Expect = 6e-10 Identities = 105/127 (82%), Gaps = 3/127 (2%) Strand = Plus / Plus Query: 449 ggcccgccaccgccccgcaggcagaccccaacaaccacttccccaacgccaaccctaacc 508 |||| ||||| || |||||||| | || |||| |||||||||||| |||||||| |||| Sbjct: 399 ggcctgccacggctccgcaggccaatcctaacacccacttccccaatgccaaccccaacc 458 Query: 509 cctggttcatggggggaggcggcgtcccgctggccaacgcgcggtgggggaactacacat 568 | ||||||||||| ||| ||| |||| || ||||| || ||||||||||| ||||| | Sbjct: 459 cttggttcatgggtgga---ggcatcccactagccaatgcacggtgggggaattacacct 515 Query: 569 tctcggc 575 ||||||| Sbjct: 516 tctcggc 522
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 248 bits (125), Expect = 2e-62 Identities = 188/209 (89%) Strand = Plus / Plus Query: 190 gggggcagcttcgagtgcaacatatgcttcgagctgccgcaggagcccatcgtcacactc 249 ||||| ||||||||||||||||||||||| ||||| ||||||||||| || ||||| ||| Sbjct: 27226635 gggggaagcttcgagtgcaacatatgctttgagcttccgcaggagcctattgtcacgctc 27226694 Query: 250 tgcggccacctcttctgctggccatgcctctacaagtggctgcacatccactcgcactcc 309 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 27226695 tgtggccacctcttctgctggccatgcctctacaagtggctgcacatccactcgcattca 27226754 Query: 310 cccgagtgccccgtctgcaaggccgtcgtcgaggaggacaagctcgtcccgctctacggc 369 || |||||||| ||||||||||| || ||||||||||| ||||| ||||| ||||| ||| Sbjct: 27226755 cctgagtgcccggtctgcaaggctgttgtcgaggaggataagcttgtccccctctatggc 27226814 Query: 370 cgtggcaaggaccgcgtcgaccccaggtc 398 ||||| |||||||| || ||||| ||||| Sbjct: 27226815 cgtggtaaggaccgtgttgacccaaggtc 27226843 Score = 73.8 bits (37), Expect = 6e-10 Identities = 105/127 (82%), Gaps = 3/127 (2%) Strand = Plus / Plus Query: 449 ggcccgccaccgccccgcaggcagaccccaacaaccacttccccaacgccaaccctaacc 508 |||| ||||| || |||||||| | || |||| |||||||||||| |||||||| |||| Sbjct: 27226891 ggcctgccacggctccgcaggccaatcctaacacccacttccccaatgccaaccccaacc 27226950 Query: 509 cctggttcatggggggaggcggcgtcccgctggccaacgcgcggtgggggaactacacat 568 | ||||||||||| ||| ||| |||| || ||||| || ||||||||||| ||||| | Sbjct: 27226951 cttggttcatgggtgga---ggcatcccactagccaatgcacggtgggggaattacacct 27227007 Query: 569 tctcggc 575 ||||||| Sbjct: 27227008 tctcggc 27227014
>emb|AL831809.3|CNS08CAM Oryza sativa chromosome 12, . BAC OJ1268_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 146585 Score = 248 bits (125), Expect = 2e-62 Identities = 188/209 (89%) Strand = Plus / Plus Query: 190 gggggcagcttcgagtgcaacatatgcttcgagctgccgcaggagcccatcgtcacactc 249 ||||| ||||||||||||||||||||||| ||||| ||||||||||| || ||||| ||| Sbjct: 114067 gggggaagcttcgagtgcaacatatgctttgagcttccgcaggagcctattgtcacgctc 114126 Query: 250 tgcggccacctcttctgctggccatgcctctacaagtggctgcacatccactcgcactcc 309 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 114127 tgtggccacctcttctgctggccatgcctctacaagtggctgcacatccactcgcattca 114186 Query: 310 cccgagtgccccgtctgcaaggccgtcgtcgaggaggacaagctcgtcccgctctacggc 369 || |||||||| ||||||||||| || ||||||||||| ||||| ||||| ||||| ||| Sbjct: 114187 cctgagtgcccggtctgcaaggctgttgtcgaggaggataagcttgtccccctctatggc 114246 Query: 370 cgtggcaaggaccgcgtcgaccccaggtc 398 ||||| |||||||| || ||||| ||||| Sbjct: 114247 cgtggtaaggaccgtgttgacccaaggtc 114275 Score = 73.8 bits (37), Expect = 6e-10 Identities = 105/127 (82%), Gaps = 3/127 (2%) Strand = Plus / Plus Query: 449 ggcccgccaccgccccgcaggcagaccccaacaaccacttccccaacgccaaccctaacc 508 |||| ||||| || |||||||| | || |||| |||||||||||| |||||||| |||| Sbjct: 114323 ggcctgccacggctccgcaggccaatcctaacacccacttccccaatgccaaccccaacc 114382 Query: 509 cctggttcatggggggaggcggcgtcccgctggccaacgcgcggtgggggaactacacat 568 | ||||||||||| ||| ||| |||| || ||||| || ||||||||||| ||||| | Sbjct: 114383 cttggttcatgggtgga---ggcatcccactagccaatgcacggtgggggaattacacct 114439 Query: 569 tctcggc 575 ||||||| Sbjct: 114440 tctcggc 114446
>ref|NM_191378.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1683 Score = 214 bits (108), Expect = 2e-52 Identities = 168/188 (89%) Strand = Plus / Plus Query: 192 gggcagcttcgagtgcaacatatgcttcgagctgccgcaggagcccatcgtcacactctg 251 ||||||||||||||||||||| ||| | ||||| | ||||| ||| ||||||| ||||| Sbjct: 1074 gggcagcttcgagtgcaacatctgcctggagctagcccaggaccccgtcgtcaccctctg 1133 Query: 252 cggccacctcttctgctggccatgcctctacaagtggctgcacatccactcgcactcccc 311 ||||||||||||||||||||| ||||||||| ||||||| ||| ||||| ||||||||| Sbjct: 1134 cggccacctcttctgctggccgtgcctctacgagtggctccacgtccacgcgcactcccg 1193 Query: 312 cgagtgccccgtctgcaaggccgtcgtcgaggaggacaagctcgtcccgctctacggccg 371 ||||||||||||||||||||||| | |||||||||| ||||||||||| ||||||||||| Sbjct: 1194 cgagtgccccgtctgcaaggccggcctcgaggaggagaagctcgtccccctctacggccg 1253 Query: 372 tggcaagg 379 ||||||| Sbjct: 1254 cggcaagg 1261
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 214 bits (108), Expect = 2e-52 Identities = 168/188 (89%) Strand = Plus / Minus Query: 192 gggcagcttcgagtgcaacatatgcttcgagctgccgcaggagcccatcgtcacactctg 251 ||||||||||||||||||||| ||| | ||||| | ||||| ||| ||||||| ||||| Sbjct: 32270798 gggcagcttcgagtgcaacatctgcctggagctagcccaggaccccgtcgtcaccctctg 32270739 Query: 252 cggccacctcttctgctggccatgcctctacaagtggctgcacatccactcgcactcccc 311 ||||||||||||||||||||| ||||||||| ||||||| ||| ||||| ||||||||| Sbjct: 32270738 cggccacctcttctgctggccgtgcctctacgagtggctccacgtccacgcgcactcccg 32270679 Query: 312 cgagtgccccgtctgcaaggccgtcgtcgaggaggacaagctcgtcccgctctacggccg 371 ||||||||||||||||||||||| | |||||||||| ||||||||||| ||||||||||| Sbjct: 32270678 cgagtgccccgtctgcaaggccggcctcgaggaggagaagctcgtccccctctacggccg 32270619 Query: 372 tggcaagg 379 ||||||| Sbjct: 32270618 cggcaagg 32270611 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Minus Query: 58 gcgccgtcccctccctccgcccggccgccgctcg 91 ||||||||||||||||||| | ||||||||||| Sbjct: 28126586 gcgccgtcccctccctccggctcgccgccgctcg 28126553 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 gagcgcgagcgggagcgtgg 178 |||||||||||||||||||| Sbjct: 6006056 gagcgcgagcgggagcgtgg 6006075
>dbj|AP003239.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0403C05 Length = 151085 Score = 214 bits (108), Expect = 2e-52 Identities = 168/188 (89%) Strand = Plus / Minus Query: 192 gggcagcttcgagtgcaacatatgcttcgagctgccgcaggagcccatcgtcacactctg 251 ||||||||||||||||||||| ||| | ||||| | ||||| ||| ||||||| ||||| Sbjct: 141551 gggcagcttcgagtgcaacatctgcctggagctagcccaggaccccgtcgtcaccctctg 141492 Query: 252 cggccacctcttctgctggccatgcctctacaagtggctgcacatccactcgcactcccc 311 ||||||||||||||||||||| ||||||||| ||||||| ||| ||||| ||||||||| Sbjct: 141491 cggccacctcttctgctggccgtgcctctacgagtggctccacgtccacgcgcactcccg 141432 Query: 312 cgagtgccccgtctgcaaggccgtcgtcgaggaggacaagctcgtcccgctctacggccg 371 ||||||||||||||||||||||| | |||||||||| ||||||||||| ||||||||||| Sbjct: 141431 cgagtgccccgtctgcaaggccggcctcgaggaggagaagctcgtccccctctacggccg 141372 Query: 372 tggcaagg 379 ||||||| Sbjct: 141371 cggcaagg 141364
>dbj|AP003377.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0053G03 Length = 101901 Score = 214 bits (108), Expect = 2e-52 Identities = 168/188 (89%) Strand = Plus / Minus Query: 192 gggcagcttcgagtgcaacatatgcttcgagctgccgcaggagcccatcgtcacactctg 251 ||||||||||||||||||||| ||| | ||||| | ||||| ||| ||||||| ||||| Sbjct: 3083 gggcagcttcgagtgcaacatctgcctggagctagcccaggaccccgtcgtcaccctctg 3024 Query: 252 cggccacctcttctgctggccatgcctctacaagtggctgcacatccactcgcactcccc 311 ||||||||||||||||||||| ||||||||| ||||||| ||| ||||| ||||||||| Sbjct: 3023 cggccacctcttctgctggccgtgcctctacgagtggctccacgtccacgcgcactcccg 2964 Query: 312 cgagtgccccgtctgcaaggccgtcgtcgaggaggacaagctcgtcccgctctacggccg 371 ||||||||||||||||||||||| | |||||||||| ||||||||||| ||||||||||| Sbjct: 2963 cgagtgccccgtctgcaaggccggcctcgaggaggagaagctcgtccccctctacggccg 2904 Query: 372 tggcaagg 379 ||||||| Sbjct: 2903 cggcaagg 2896
>dbj|AK070278.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049F08, full insert sequence Length = 1579 Score = 214 bits (108), Expect = 2e-52 Identities = 168/188 (89%) Strand = Plus / Plus Query: 192 gggcagcttcgagtgcaacatatgcttcgagctgccgcaggagcccatcgtcacactctg 251 ||||||||||||||||||||| ||| | ||||| | ||||| ||| ||||||| ||||| Sbjct: 687 gggcagcttcgagtgcaacatctgcctggagctagcccaggaccccgtcgtcaccctctg 746 Query: 252 cggccacctcttctgctggccatgcctctacaagtggctgcacatccactcgcactcccc 311 ||||||||||||||||||||| ||||||||| ||||||| ||| ||||| ||||||||| Sbjct: 747 cggccacctcttctgctggccgtgcctctacgagtggctccacgtccacgcgcactcccg 806 Query: 312 cgagtgccccgtctgcaaggccgtcgtcgaggaggacaagctcgtcccgctctacggccg 371 ||||||||||||||||||||||| | |||||||||| ||||||||||| ||||||||||| Sbjct: 807 cgagtgccccgtctgcaaggccggcctcgaggaggagaagctcgtccccctctacggccg 866 Query: 372 tggcaagg 379 ||||||| Sbjct: 867 cggcaagg 874
>dbj|AK069471.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023M16, full insert sequence Length = 1382 Score = 214 bits (108), Expect = 2e-52 Identities = 168/188 (89%) Strand = Plus / Plus Query: 192 gggcagcttcgagtgcaacatatgcttcgagctgccgcaggagcccatcgtcacactctg 251 ||||||||||||||||||||| ||| | ||||| | ||||| ||| ||||||| ||||| Sbjct: 425 gggcagcttcgagtgcaacatctgcctggagctagcccaggaccccgtcgtcaccctctg 484 Query: 252 cggccacctcttctgctggccatgcctctacaagtggctgcacatccactcgcactcccc 311 ||||||||||||||||||||| ||||||||| ||||||| ||| ||||| ||||||||| Sbjct: 485 cggccacctcttctgctggccgtgcctctacgagtggctccacgtccacgcgcactcccg 544 Query: 312 cgagtgccccgtctgcaaggccgtcgtcgaggaggacaagctcgtcccgctctacggccg 371 ||||||||||||||||||||||| | |||||||||| ||||||||||| ||||||||||| Sbjct: 545 cgagtgccccgtctgcaaggccggcctcgaggaggagaagctcgtccccctctacggccg 604 Query: 372 tggcaagg 379 ||||||| Sbjct: 605 cggcaagg 612
>gb|BT018923.1| Zea mays clone Contig34.F mRNA sequence Length = 1118 Score = 204 bits (103), Expect = 2e-49 Identities = 163/183 (89%) Strand = Plus / Plus Query: 192 gggcagcttcgagtgcaacatatgcttcgagctgccgcaggagcccatcgtcacactctg 251 ||||||||||||||||||||| || | || ||| ||||||| ||| | ||||| ||||| Sbjct: 264 gggcagcttcgagtgcaacatctgtctggacctggcgcaggatcccgtggtcaccctctg 323 Query: 252 cggccacctcttctgctggccatgcctctacaagtggctgcacatccactcgcactcccc 311 ||||||||||||||||||||||||||||||| ||||||| ||| | ||| ||||||||| Sbjct: 324 cggccacctcttctgctggccatgcctctacgagtggctccacgtgcacgcgcactccca 383 Query: 312 cgagtgccccgtctgcaaggccgtcgtcgaggaggacaagctcgtcccgctctacggccg 371 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct: 384 ggagtgccccgtctgcaaggccgtcgtcgaggaggggaagctcgtccctctctacggccg 443 Query: 372 tgg 374 ||| Sbjct: 444 tgg 446
>gb|AY110835.1| Zea mays CL46086_1 mRNA sequence Length = 842 Score = 117 bits (59), Expect = 4e-23 Identities = 123/146 (84%) Strand = Plus / Minus Query: 253 ggccacctcttctgctggccatgcctctacaagtggctgcacatccactcgcactccccc 312 |||||||||||||||||||| ||||| ||| |||||||||||| ||| | ||||| || Sbjct: 831 ggccacctcttctgctggccgtgcctttaccggtggctgcacattcacgcacactcgcca 772 Query: 313 gagtgccccgtctgcaaggccgtcgtcgaggaggacaagctcgtcccgctctacggccgt 372 |||||||| || ||||||||| |||| ||||||||||||||||| | || || ||| Sbjct: 771 gagtgcccagtgtgcaaggccctcgtggaggaggacaagctcgtnnnnntttatgggcgt 712 Query: 373 ggcaaggaccgcgtcgaccccaggtc 398 |||||||| ||||||||||| ||||| Sbjct: 711 ggcaaggatcgcgtcgacccgaggtc 686
>ref|XM_469289.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1215 Score = 111 bits (56), Expect = 3e-21 Identities = 128/152 (84%) Strand = Plus / Plus Query: 247 ctctgcggccacctcttctgctggccatgcctctacaagtggctgcacatccactcgcac 306 ||||| ||||||||||||||||||||||| | |||| |||| ||||||||||| | ||| Sbjct: 248 ctctgtggccacctcttctgctggccatgtatttacaggtggttgcacatccacgcacac 307 Query: 307 tcccccgagtgccccgtctgcaaggccgtcgtcgaggaggacaagctcgtcccgctctac 366 || || |||||||| || ||||| || ||||| || ||||| |||||||| || || || Sbjct: 308 tctccagagtgcccggtgtgcaaagctgtcgttgaagaggataagctcgttcccctttat 367 Query: 367 ggccgtggcaaggaccgcgtcgaccccaggtc 398 || |||||||||||||||||||| || ||||| Sbjct: 368 gggcgtggcaaggaccgcgtcgatccaaggtc 399
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 111 bits (56), Expect = 3e-21 Identities = 128/152 (84%) Strand = Plus / Plus Query: 247 ctctgcggccacctcttctgctggccatgcctctacaagtggctgcacatccactcgcac 306 ||||| ||||||||||||||||||||||| | |||| |||| ||||||||||| | ||| Sbjct: 26572668 ctctgtggccacctcttctgctggccatgtatttacaggtggttgcacatccacgcacac 26572727 Query: 307 tcccccgagtgccccgtctgcaaggccgtcgtcgaggaggacaagctcgtcccgctctac 366 || || |||||||| || ||||| || ||||| || ||||| |||||||| || || || Sbjct: 26572728 tctccagagtgcccggtgtgcaaagctgtcgttgaagaggataagctcgttcccctttat 26572787 Query: 367 ggccgtggcaaggaccgcgtcgaccccaggtc 398 || |||||||||||||||||||| || ||||| Sbjct: 26572788 gggcgtggcaaggaccgcgtcgatccaaggtc 26572819
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 111 bits (56), Expect = 3e-21 Identities = 128/152 (84%) Strand = Plus / Plus Query: 247 ctctgcggccacctcttctgctggccatgcctctacaagtggctgcacatccactcgcac 306 ||||| ||||||||||||||||||||||| | |||| |||| ||||||||||| | ||| Sbjct: 26663991 ctctgtggccacctcttctgctggccatgtatttacaggtggttgcacatccacgcacac 26664050 Query: 307 tcccccgagtgccccgtctgcaaggccgtcgtcgaggaggacaagctcgtcccgctctac 366 || || |||||||| || ||||| || ||||| || ||||| |||||||| || || || Sbjct: 26664051 tctccagagtgcccggtgtgcaaagctgtcgttgaagaggataagctcgttcccctttat 26664110 Query: 367 ggccgtggcaaggaccgcgtcgaccccaggtc 398 || |||||||||||||||||||| || ||||| Sbjct: 26664111 gggcgtggcaaggaccgcgtcgatccaaggtc 26664142
>gb|AC079889.20| Oryza sativa chromosome 3 BAC OSJNBa0092M19 genomic sequence, complete sequence Length = 136712 Score = 111 bits (56), Expect = 3e-21 Identities = 128/152 (84%) Strand = Plus / Plus Query: 247 ctctgcggccacctcttctgctggccatgcctctacaagtggctgcacatccactcgcac 306 ||||| ||||||||||||||||||||||| | |||| |||| ||||||||||| | ||| Sbjct: 95482 ctctgtggccacctcttctgctggccatgtatttacaggtggttgcacatccacgcacac 95541 Query: 307 tcccccgagtgccccgtctgcaaggccgtcgtcgaggaggacaagctcgtcccgctctac 366 || || |||||||| || ||||| || ||||| || ||||| |||||||| || || || Sbjct: 95542 tctccagagtgcccggtgtgcaaagctgtcgttgaagaggataagctcgttcccctttat 95601 Query: 367 ggccgtggcaaggaccgcgtcgaccccaggtc 398 || |||||||||||||||||||| || ||||| Sbjct: 95602 gggcgtggcaaggaccgcgtcgatccaaggtc 95633
>dbj|AK068558.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153F20, full insert sequence Length = 1906 Score = 111 bits (56), Expect = 3e-21 Identities = 128/152 (84%) Strand = Plus / Plus Query: 247 ctctgcggccacctcttctgctggccatgcctctacaagtggctgcacatccactcgcac 306 ||||| ||||||||||||||||||||||| | |||| |||| ||||||||||| | ||| Sbjct: 994 ctctgtggccacctcttctgctggccatgtatttacaggtggttgcacatccacgcacac 1053 Query: 307 tcccccgagtgccccgtctgcaaggccgtcgtcgaggaggacaagctcgtcccgctctac 366 || || |||||||| || ||||| || ||||| || ||||| |||||||| || || || Sbjct: 1054 tctccagagtgcccggtgtgcaaagctgtcgttgaagaggataagctcgttcccctttat 1113 Query: 367 ggccgtggcaaggaccgcgtcgaccccaggtc 398 || |||||||||||||||||||| || ||||| Sbjct: 1114 gggcgtggcaaggaccgcgtcgatccaaggtc 1145
>gb|BT017562.1| Zea mays clone EL01N0425G08.c mRNA sequence Length = 731 Score = 97.6 bits (49), Expect = 4e-17 Identities = 169/209 (80%) Strand = Plus / Plus Query: 190 gggggcagcttcgagtgcaacatatgcttcgagctgccgcaggagcccatcgtcacactc 249 ||||| ||||| || || ||||||||||| |||||||| || ||||| || || || || Sbjct: 212 ggggggagctttgaatgtaacatatgctttgagctgcctcaagagccaatagtgactctt 271 Query: 250 tgcggccacctcttctgctggccatgcctctacaagtggctgcacatccactcgcactcc 309 || |||||||||||||||||||||||||| ||| ||||||||||||||| | || || Sbjct: 272 tgtggccacctcttctgctggccatgcctttaccggtggctgcacatccatgcacattcg 331 Query: 310 cccgagtgccccgtctgcaaggccgtcgtcgaggaggacaagctcgtcccgctctacggc 369 || |||||||| || |||||||| | || ||||| |||||||| || || || || || Sbjct: 332 ccagagtgcccagtgtgcaaggctcttgtggaggaagacaagcttgttcccctttatgga 391 Query: 370 cgtggcaaggaccgcgtcgaccccaggtc 398 || |||||||| || || ||||| ||||| Sbjct: 392 cgcggcaaggatcgtgttgacccaaggtc 420
>gb|AY110946.1| Zea mays CL21045_1 mRNA sequence Length = 798 Score = 95.6 bits (48), Expect = 2e-16 Identities = 94/111 (84%) Strand = Plus / Plus Query: 264 ctgctggccatgcctctacaagtggctgcacatccactcgcactcccccgagtgccccgt 323 ||||||||| ||||||||| ||||||| ||| ||||| | ||||| | ||||||||||| Sbjct: 1 ctgctggccctgcctctacgagtggctccacgtccacgcacactctcaggagtgccccgt 60 Query: 324 ctgcaaggccgtcgtcgaggaggacaagctcgtcccgctctacggccgtgg 374 ||||||||||||||||||||||| || ||||| ||||||||||||| Sbjct: 61 ctgcaaggccgtcgtcgaggaggggaaactcgtnnnnntctacggccgtgg 111
>ref|XM_466971.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1462 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 241 gtcacactctgcggccacctcttctgctggccatgcctctacaagtggctgcac 294 ||||| |||||||||||||||| ||||||||| ||| ||||| ||||||||||| Sbjct: 549 gtcaccctctgcggccacctctactgctggccctgcatctacgagtggctgcac 602 Score = 40.1 bits (20), Expect = 8.0 Identities = 47/56 (83%) Strand = Plus / Plus Query: 316 tgccccgtctgcaaggccgtcgtcgaggaggacaagctcgtcccgctctacggccg 371 |||||||| |||||||||| ||| | ||||| |||||| |||||||||||||| Sbjct: 660 tgccccgtgtgcaaggccgcggtctcgccggacacgctcgtgccgctctacggccg 715
>ref|XM_506883.1| PREDICTED Oryza sativa (japonica cultivar-group), P0010C01.23-1 mRNA Length = 2039 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 241 gtcacactctgcggccacctcttctgctggccatgcctctacaagtggctgcac 294 ||||| |||||||||||||||| ||||||||| ||| ||||| ||||||||||| Sbjct: 1064 gtcaccctctgcggccacctctactgctggccctgcatctacgagtggctgcac 1117 Score = 40.1 bits (20), Expect = 8.0 Identities = 47/56 (83%) Strand = Plus / Plus Query: 316 tgccccgtctgcaaggccgtcgtcgaggaggacaagctcgtcccgctctacggccg 371 |||||||| |||||||||| ||| | ||||| |||||| |||||||||||||| Sbjct: 1175 tgccccgtgtgcaaggccgcggtctcgccggacacgctcgtgccgctctacggccg 1230
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 241 gtcacactctgcggccacctcttctgctggccatgcctctacaagtggctgcac 294 ||||| |||||||||||||||| ||||||||| ||| ||||| ||||||||||| Sbjct: 25691020 gtcaccctctgcggccacctctactgctggccctgcatctacgagtggctgcac 25690967 Score = 40.1 bits (20), Expect = 8.0 Identities = 47/56 (83%) Strand = Plus / Minus Query: 316 tgccccgtctgcaaggccgtcgtcgaggaggacaagctcgtcccgctctacggccg 371 |||||||| |||||||||| ||| | ||||| |||||| |||||||||||||| Sbjct: 25690909 tgccccgtgtgcaaggccgcggtctcgccggacacgctcgtgccgctctacggccg 25690854
>dbj|AP004768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0010C01 Length = 186185 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 241 gtcacactctgcggccacctcttctgctggccatgcctctacaagtggctgcac 294 ||||| |||||||||||||||| ||||||||| ||| ||||| ||||||||||| Sbjct: 93696 gtcaccctctgcggccacctctactgctggccctgcatctacgagtggctgcac 93643 Score = 40.1 bits (20), Expect = 8.0 Identities = 47/56 (83%) Strand = Plus / Minus Query: 316 tgccccgtctgcaaggccgtcgtcgaggaggacaagctcgtcccgctctacggccg 371 |||||||| |||||||||| ||| | ||||| |||||| |||||||||||||| Sbjct: 93585 tgccccgtgtgcaaggccgcggtctcgccggacacgctcgtgccgctctacggccg 93530
>dbj|AK105980.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-F11, full insert sequence Length = 2038 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 241 gtcacactctgcggccacctcttctgctggccatgcctctacaagtggctgcac 294 ||||| |||||||||||||||| ||||||||| ||| ||||| ||||||||||| Sbjct: 1064 gtcaccctctgcggccacctctactgctggccctgcatctacgagtggctgcac 1117 Score = 40.1 bits (20), Expect = 8.0 Identities = 47/56 (83%) Strand = Plus / Plus Query: 316 tgccccgtctgcaaggccgtcgtcgaggaggacaagctcgtcccgctctacggccg 371 |||||||| |||||||||| ||| | ||||| |||||| |||||||||||||| Sbjct: 1175 tgccccgtgtgcaaggccgcggtctcgccggacacgctcgtgccgctctacggccg 1230
>dbj|AK071904.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063D05, full insert sequence Length = 1462 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 241 gtcacactctgcggccacctcttctgctggccatgcctctacaagtggctgcac 294 ||||| |||||||||||||||| ||||||||| ||| ||||| ||||||||||| Sbjct: 548 gtcaccctctgcggccacctctactgctggccctgcatctacgagtggctgcac 601 Score = 40.1 bits (20), Expect = 8.0 Identities = 47/56 (83%) Strand = Plus / Plus Query: 316 tgccccgtctgcaaggccgtcgtcgaggaggacaagctcgtcccgctctacggccg 371 |||||||| |||||||||| ||| | ||||| |||||| |||||||||||||| Sbjct: 659 tgccccgtgtgcaaggccgcggtctcgccggacacgctcgtgccgctctacggccg 714
>dbj|AK070367.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049F10, full insert sequence Length = 2935 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 241 gtcacactctgcggccacctcttctgctggccatgcctctacaagtggctgcac 294 ||||| |||||||||||||||| ||||||||| ||| ||||| ||||||||||| Sbjct: 2683 gtcaccctctgcggccacctctactgctggccctgcatctacgagtggctgcac 2736 Score = 40.1 bits (20), Expect = 8.0 Identities = 47/56 (83%) Strand = Plus / Plus Query: 316 tgccccgtctgcaaggccgtcgtcgaggaggacaagctcgtcccgctctacggccg 371 |||||||| |||||||||| ||| | ||||| |||||| |||||||||||||| Sbjct: 2794 tgccccgtgtgcaaggccgcggtctcgccggacacgctcgtgccgctctacggccg 2849
>gb|AY129244.1| Populus x canescens putative RING protein (RING) mRNA, complete cds Length = 1003 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 241 gtcacactctgcggccacctcttctgctggccatgcctctacaagtggctgcacatcca 299 ||||| ||||| |||||||||| ||||||||| ||| ||||||||||||| ||| |||| Sbjct: 283 gtcaccctctgtggccacctctactgctggccctgcatctacaagtggctccacgtcca 341
>gb|DQ443177.1| Bombyx mori ring finger protein 5 mRNA, complete cds Length = 1084 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 250 tgcggccacctcttctgctggccatg 275 |||||||||||||||||||||||||| Sbjct: 239 tgcggccacctcttctgctggccatg 264
>gb|AY347825.1| Malus x domestica clone 13-4 unknown mRNA Length = 322 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 250 tgcggccacctcttctgctggccatgcctctaca 283 |||||||||||||| |||||||| |||||||||| Sbjct: 270 tgcggccacctcttttgctggccttgcctctaca 303
>ref|NM_118882.2| Arabidopsis thaliana protein binding / ubiquitin-protein ligase/ zinc ion binding AT4G27470 mRNA, complete cds Length = 1102 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Plus Query: 241 gtcacactctgcggccacctcttctgctggccatgcctctacaagtgg 288 ||||| |||||||| ||||| ||||||||||| ||| | ||||||||| Sbjct: 325 gtcactctctgcgggcaccttttctgctggccttgcatttacaagtgg 372
>emb|AL161571.2|ATCHRIV67 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 67 Length = 200001 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Plus Query: 241 gtcacactctgcggccacctcttctgctggccatgcctctacaagtgg 288 ||||| |||||||| ||||| ||||||||||| ||| | ||||||||| Sbjct: 46224 gtcactctctgcgggcaccttttctgctggccttgcatttacaagtgg 46271
>emb|AL078467.1|ATF27G19 Arabidopsis thaliana DNA chromosome 4, BAC clone F27G19 (ESSA project) Length = 82381 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Plus Query: 241 gtcacactctgcggccacctcttctgctggccatgcctctacaagtgg 288 ||||| |||||||| ||||| ||||||||||| ||| | ||||||||| Sbjct: 59330 gtcactctctgcgggcaccttttctgctggccttgcatttacaagtgg 59377
>gb|BT006285.1| Arabidopsis thaliana At4g27470 mRNA, complete cds Length = 732 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Plus Query: 241 gtcacactctgcggccacctcttctgctggccatgcctctacaagtgg 288 ||||| |||||||| ||||| ||||||||||| ||| | ||||||||| Sbjct: 166 gtcactctctgcgggcaccttttctgctggccttgcatttacaagtgg 213
>gb|DQ059124.1| Arabidopsis thaliana RING finger family protein (At4g27470) mRNA, complete cds Length = 732 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Plus Query: 241 gtcacactctgcggccacctcttctgctggccatgcctctacaagtgg 288 ||||| |||||||| ||||| ||||||||||| ||| | ||||||||| Sbjct: 166 gtcactctctgcgggcaccttttctgctggccttgcatttacaagtgg 213
>gb|BT002429.1| Arabidopsis thaliana putative RING zinc finger protein (At4g27470) mRNA, complete cds Length = 1087 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Plus Query: 241 gtcacactctgcggccacctcttctgctggccatgcctctacaagtgg 288 ||||| |||||||| ||||| ||||||||||| ||| | ||||||||| Sbjct: 325 gtcactctctgcgggcaccttttctgctggccttgcatttacaagtgg 372
>ref|XM_369667.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein (MG05797.4) partial mRNA Length = 1626 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 458 ccgccccgcaggcagaccccaac 480 ||||||||||||||||||||||| Sbjct: 101 ccgccccgcaggcagaccccaac 123
>ref|NM_213037.1| Danio rerio zgc:73070 (zgc:73070), mRNA Length = 944 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 250 tgcggccacctcttctgctggccatgc 276 ||||| ||||||||||||||||||||| Sbjct: 246 tgcggacacctcttctgctggccatgc 272
>gb|BC059445.1| Danio rerio zgc:73070, mRNA (cDNA clone MGC:73070 IMAGE:4145700), complete cds Length = 944 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 250 tgcggccacctcttctgctggccatgc 276 ||||| ||||||||||||||||||||| Sbjct: 246 tgcggacacctcttctgctggccatgc 272
>ref|NM_189106.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1874 Score = 44.1 bits (22), Expect = 0.51 Identities = 34/38 (89%) Strand = Plus / Plus Query: 253 ggccacctcttctgctggccatgcctctacaagtggct 290 |||||||||||||||||||| ||| | ||| ||||||| Sbjct: 1106 ggccacctcttctgctggccttgcatataccagtggct 1143
>ref|XM_507140.1| PREDICTED Oryza sativa (japonica cultivar-group), P0577B11.136 mRNA Length = 1953 Score = 44.1 bits (22), Expect = 0.51 Identities = 34/38 (89%) Strand = Plus / Plus Query: 253 ggccacctcttctgctggccatgcctctacaagtggct 290 |||||||||||||||||||| ||| | ||| ||||||| Sbjct: 1180 ggccacctcttctgctggccttgcatataccagtggct 1217
>ref|NM_192062.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1479 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Minus Query: 58 gcgccgtcccctccctccgcccggccgccgctcg 91 ||||||||||||||||||| | ||||||||||| Sbjct: 179 gcgccgtcccctccctccggctcgccgccgctcg 146
>gb|AC135422.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0043H23, complete sequence Length = 134097 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Minus Query: 54 cgccgcgccgtcccctccctccgcccggcc 83 ||||||||||||||| || ||||||||||| Sbjct: 78928 cgccgcgccgtccccaccatccgcccggcc 78899
>gb|AC146716.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1003C08, complete sequence Length = 152527 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Minus Query: 54 cgccgcgccgtcccctccctccgcccggcc 83 ||||||||||||||| || ||||||||||| Sbjct: 114406 cgccgcgccgtccccaccatccgcccggcc 114377
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.51 Identities = 34/38 (89%) Strand = Plus / Minus Query: 253 ggccacctcttctgctggccatgcctctacaagtggct 290 |||||||||||||||||||| ||| | ||| ||||||| Sbjct: 3680486 ggccacctcttctgctggccttgcatataccagtggct 3680449
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Minus Query: 54 cgccgcgccgtcccctccctccgcccggcc 83 ||||||||||||||| || ||||||||||| Sbjct: 7376151 cgccgcgccgtccccaccatccgcccggcc 7376122
>dbj|AP003347.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0445E10 Length = 145912 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Minus Query: 58 gcgccgtcccctccctccgcccggccgccgctcg 91 ||||||||||||||||||| | ||||||||||| Sbjct: 10580 gcgccgtcccctccctccggctcgccgccgctcg 10547
>dbj|AP005847.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ9990_A01 Length = 101684 Score = 44.1 bits (22), Expect = 0.51 Identities = 34/38 (89%) Strand = Plus / Minus Query: 253 ggccacctcttctgctggccatgcctctacaagtggct 290 |||||||||||||||||||| ||| | ||| ||||||| Sbjct: 3983 ggccacctcttctgctggccttgcatataccagtggct 3946
>dbj|AP004363.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0019E03 Length = 152092 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Minus Query: 58 gcgccgtcccctccctccgcccggccgccgctcg 91 ||||||||||||||||||| | ||||||||||| Sbjct: 141785 gcgccgtcccctccctccggctcgccgccgctcg 141752
>dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0577B11 Length = 180355 Score = 44.1 bits (22), Expect = 0.51 Identities = 34/38 (89%) Strand = Plus / Minus Query: 253 ggccacctcttctgctggccatgcctctacaagtggct 290 |||||||||||||||||||| ||| | ||| ||||||| Sbjct: 158992 ggccacctcttctgctggccttgcatataccagtggct 158955
>dbj|AK102462.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094D12, full insert sequence Length = 1874 Score = 44.1 bits (22), Expect = 0.51 Identities = 34/38 (89%) Strand = Plus / Plus Query: 253 ggccacctcttctgctggccatgcctctacaagtggct 290 |||||||||||||||||||| ||| | ||| ||||||| Sbjct: 1106 ggccacctcttctgctggccttgcatataccagtggct 1143
>dbj|AK067263.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096G17, full insert sequence Length = 2524 Score = 44.1 bits (22), Expect = 0.51 Identities = 34/38 (89%) Strand = Plus / Minus Query: 253 ggccacctcttctgctggccatgcctctacaagtggct 290 |||||||||||||||||||| ||| | ||| ||||||| Sbjct: 1124 ggccacctcttctgctggccttgcatataccagtggct 1087
>dbj|AK063453.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-G04, full insert sequence Length = 1952 Score = 44.1 bits (22), Expect = 0.51 Identities = 34/38 (89%) Strand = Plus / Plus Query: 253 ggccacctcttctgctggccatgcctctacaagtggct 290 |||||||||||||||||||| ||| | ||| ||||||| Sbjct: 1179 ggccacctcttctgctggccttgcatataccagtggct 1216
>ref|XM_478618.1| Oryza sativa (japonica cultivar-group), mRNA Length = 480 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 172 agcgtggccggcgacggcggg 192 ||||||||||||||||||||| Sbjct: 338 agcgtggccggcgacggcggg 358
>ref|XM_478541.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2283 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 175 gtggccggcgacggcgggggc 195 ||||||||||||||||||||| Sbjct: 135 gtggccggcgacggcgggggc 155
>ref|XM_430124.1| PREDICTED: Gallus gallus LOC424079 (LOC424079), mRNA Length = 1590 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 gccggcgggaggcgccgcgcc 62 ||||||||||||||||||||| Sbjct: 116 gccggcgggaggcgccgcgcc 136
>emb|BX927413.10| Zebrafish DNA sequence from clone DKEY-29D8 in linkage group 2, complete sequence Length = 96453 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 498 caaccctaacccctggttcat 518 ||||||||||||||||||||| Sbjct: 25057 caaccctaacccctggttcat 25037
>emb|AL353803.23| Human DNA sequence from clone RP11-65J3 on chromosome 9 Contains three novel genes, the 5' end of a novel gene, a novel pseudogene and seven CpG islands, complete sequence Length = 165696 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 65 cccctccctccgcccggccgccgct 89 |||| |||||||||||||||||||| Sbjct: 158373 ccccgccctccgcccggccgccgct 158349
>gb|AY267681.1| Bigelowiella natans phosphoglycerate kinase 1 mRNA, complete cds; nuclear gene for plastid product Length = 1680 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 335 tcgtcgaggaggacaagctcg 355 ||||||||||||||||||||| Sbjct: 1032 tcgtcgaggaggacaagctcg 1052
>gb|AE011681.1| Xanthomonas axonopodis pv. citri str. 306, section 59 of 469 of the complete genome Length = 10175 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 240 cgtcacactctgcggccacct 260 ||||||||||||||||||||| Sbjct: 2429 cgtcacactctgcggccacct 2449
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 ccgcccggccgccgctcgacg 94 ||||||||||||||||||||| Sbjct: 1041962 ccgcccggccgccgctcgacg 1041982
>gb|AC011498.7| Homo sapiens chromosome 19 clone CTB-50L17, complete sequence Length = 273403 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 ctcgtcctctcccatcccctc 30 ||||||||||||||||||||| Sbjct: 179420 ctcgtcctctcccatcccctc 179440
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 172 agcgtggccggcgacggcggg 192 ||||||||||||||||||||| Sbjct: 21474202 agcgtggccggcgacggcggg 21474182 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 175 gtggccggcgacggcgggggc 195 ||||||||||||||||||||| Sbjct: 20916573 gtggccggcgacggcgggggc 20916593
>dbj|AP006753.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0039D04 Length = 184408 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 175 gtggccggcgacggcgggggc 195 ||||||||||||||||||||| Sbjct: 127363 gtggccggcgacggcgggggc 127383
>dbj|AP005156.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1729_E01 Length = 155527 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 172 agcgtggccggcgacggcggg 192 ||||||||||||||||||||| Sbjct: 118258 agcgtggccggcgacggcggg 118238
>dbj|AP003838.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1582_D10 Length = 103475 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 172 agcgtggccggcgacggcggg 192 ||||||||||||||||||||| Sbjct: 11986 agcgtggccggcgacggcggg 11966
>dbj|AP003811.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1131_E05 Length = 122216 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 175 gtggccggcgacggcgggggc 195 ||||||||||||||||||||| Sbjct: 44488 gtggccggcgacggcgggggc 44508
>dbj|AK060565.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-H08, full insert sequence Length = 2283 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 175 gtggccggcgacggcgggggc 195 ||||||||||||||||||||| Sbjct: 135 gtggccggcgacggcgggggc 155
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 gcccgcaccgccggcgggagg 53 ||||||||||||||||||||| Sbjct: 121435 gcccgcaccgccggcgggagg 121455
>dbj|AP004524.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT08O18, TM0052a, complete sequence Length = 20200 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Minus Query: 266 gctggccatgcctctacaagtggctgcacatccactc 302 ||||||| ||||| ||||||||||| ||| ||||||| Sbjct: 1819 gctggccttgcctttacaagtggcttcacttccactc 1783
>ref|NM_188389.1| Oryza sativa (japonica cultivar-group), Ozsa8115 predicted mRNA Length = 1500 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 gagcgcgagcgggagcgtgg 178 |||||||||||||||||||| Sbjct: 108 gagcgcgagcgggagcgtgg 89
>ref|NM_204414.1| Gallus gallus Y box binding protein 1 (YBX1), mRNA Length = 1525 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ccgccggcgggaggcgccgc 59 |||||||||||||||||||| Sbjct: 279 ccgccggcgggaggcgccgc 260
>gb|AY441041.1| Armigeres subalbatus ASAP ID: 41793 conserved unknown mRNA sequence Length = 687 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 ttcgagtgcaacatatgctt 218 |||||||||||||||||||| Sbjct: 579 ttcgagtgcaacatatgctt 598
>gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 5, complete sequence Length = 1507550 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 tcgaggaggacaagctcgtc 357 |||||||||||||||||||| Sbjct: 1455207 tcgaggaggacaagctcgtc 1455188
>ref|XM_876058.1| PREDICTED: Bos taurus similar to Peroxisome assembly protein 10 (Peroxin-10) (RING finger protein 69), transcript variant 3 (LOC614539), mRNA Length = 2501 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 243 cacactctgcggccacctcttctgctgg 270 ||||| |||||||||||| ||||||||| Sbjct: 849 cacaccctgcggccacctgttctgctgg 876
>ref|XM_865404.1| PREDICTED: Bos taurus similar to Peroxisome assembly protein 10 (Peroxin-10) (RING finger protein 69), transcript variant 2 (LOC614539), mRNA Length = 3069 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 243 cacactctgcggccacctcttctgctgg 270 ||||| |||||||||||| ||||||||| Sbjct: 849 cacaccctgcggccacctgttctgctgg 876
>ref|XM_975664.1| PREDICTED: Mus musculus extraembryonic, spermatogenesis, homeobox 1, transcript variant 1 (Esx1), mRNA Length = 1193 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 487 ttccccaacgccaaccctaacccc 510 ||||||||| |||||||||||||| Sbjct: 1113 ttccccaaccccaaccctaacccc 1136
>ref|XM_975726.1| PREDICTED: Mus musculus extraembryonic, spermatogenesis, homeobox 1, transcript variant 3 (Esx1), mRNA Length = 1676 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 487 ttccccaacgccaaccctaacccc 510 ||||||||| |||||||||||||| Sbjct: 1447 ttccccaaccccaaccctaacccc 1470
>ref|XM_975696.1| PREDICTED: Mus musculus extraembryonic, spermatogenesis, homeobox 1, transcript variant 2 (Esx1), mRNA Length = 1587 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 487 ttccccaacgccaaccctaacccc 510 ||||||||| |||||||||||||| Sbjct: 1358 ttccccaaccccaaccctaacccc 1381
>ref|XM_755315.1| Ustilago maydis 521 hypothetical protein (UM04261.1) partial mRNA Length = 1527 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 tcccgctctacggccgtggc 375 |||||||||||||||||||| Sbjct: 1109 tcccgctctacggccgtggc 1128
>ref|XM_571045.1| Cryptococcus neoformans var. neoformans JEC21 hexose transport-related protein (CNE05180) partial mRNA Length = 1823 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 tcgaggaggacaagctcgtc 357 |||||||||||||||||||| Sbjct: 921 tcgaggaggacaagctcgtc 902
>gb|AC122867.4| Mus musculus BAC clone RP23-146P6 from 8, complete sequence Length = 180742 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 cacttccccaacgccaaccc 503 |||||||||||||||||||| Sbjct: 106825 cacttccccaacgccaaccc 106844
>gb|AC124198.2| Mus musculus BAC clone RP23-306E4 from 8, complete sequence Length = 172546 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 gtcctctcccatcccctctc 32 |||||||||||||||||||| Sbjct: 89258 gtcctctcccatcccctctc 89277
>emb|AM040274.1| Capsicum chinense mRNA for putative zinc finger protein (rzfp gene) Length = 955 Score = 40.1 bits (20), Expect = 8.0 Identities = 38/44 (86%) Strand = Plus / Plus Query: 235 cccatcgtcacactctgcggccacctcttctgctggccatgcct 278 ||||| || |||||||| || || |||| ||||||||||||||| Sbjct: 262 cccattgtgacactctgtggtcatctctactgctggccatgcct 305
>emb|AL049575.7|HSDJ316D7 Human DNA sequence from clone RP1-316D7 on chromosome 11p13 Contains part of the gene for G2 protein, ESTs, STSs and GSSs, complete sequence Length = 94835 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 gtcctctcccatcccctctc 32 |||||||||||||||||||| Sbjct: 54030 gtcctctcccatcccctctc 54011
>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29 Length = 296500 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 569 tctcggccgcgttcggcggc 588 |||||||||||||||||||| Sbjct: 94735 tctcggccgcgttcggcggc 94754
>emb|CR382384.18| Zebrafish DNA sequence from clone CH211-15B7 in linkage group 8, complete sequence Length = 124327 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 249 ctgcggccacctcttctgctggccatgc 276 |||||||||| ||| ||||||||||||| Sbjct: 20574 ctgcggccacatctactgctggccatgc 20547
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 ttcgagctgccgcaggagcc 236 |||||||||||||||||||| Sbjct: 492521 ttcgagctgccgcaggagcc 492540
>ref|NM_007957.1| Mus musculus extraembryonic, spermatogenesis, homeobox 1 (Esx1), mRNA Length = 1720 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 487 ttccccaacgccaaccctaacccc 510 ||||||||| |||||||||||||| Sbjct: 1446 ttccccaaccccaaccctaacccc 1469
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 179 ccggcgacggcgggggcagcttcg 202 |||||||||||||| ||||||||| Sbjct: 1132253 ccggcgacggcgggcgcagcttcg 1132276
>ref|XM_683844.1| PREDICTED: Danio rerio similar to Rnf10 protein (LOC560444), mRNA Length = 2430 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 249 ctgcggccacctcttctgctggccatgc 276 |||||||||| ||| ||||||||||||| Sbjct: 723 ctgcggccacatctactgctggccatgc 750
>emb|AL672275.14| Mouse DNA sequence from clone RP23-89D4 on chromosome X, complete sequence Length = 165401 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 487 ttccccaacgccaaccctaacccc 510 ||||||||| |||||||||||||| Sbjct: 35428 ttccccaaccccaaccctaacccc 35405
>emb|CR391085.1| Gallus gallus finished cDNA, clone ChEST68a10 Length = 1513 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ccgccggcgggaggcgccgc 59 |||||||||||||||||||| Sbjct: 279 ccgccggcgggaggcgccgc 260
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 ggcgtgccgcccggggccga 422 |||||||||||||||||||| Sbjct: 28742 ggcgtgccgcccggggccga 28761
>gb|AY009149.1| Ustilago maydis chitinase (CTS1) gene, complete cds Length = 2309 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 tcccgctctacggccgtggc 375 |||||||||||||||||||| Sbjct: 1443 tcccgctctacggccgtggc 1462
>gb|AC122714.2| Homo sapiens chromosome 5 clone RP11-451H23, complete sequence Length = 190024 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 cgtggccggcgacggcgggg 193 |||||||||||||||||||| Sbjct: 138455 cgtggccggcgacggcgggg 138436
>dbj|AP002093.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0466B10 Length = 151806 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 gagcgcgagcgggagcgtgg 178 |||||||||||||||||||| Sbjct: 73944 gagcgcgagcgggagcgtgg 73963
>dbj|AP002092.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0031E09 Length = 176349 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 gagcgcgagcgggagcgtgg 178 |||||||||||||||||||| Sbjct: 30413 gagcgcgagcgggagcgtgg 30432
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 322 gtctgcaaggccgtcgtcgaggag 345 |||| ||||||||||||||||||| Sbjct: 639106 gtctacaaggccgtcgtcgaggag 639083
>dbj|AB083323.1| Macaca fascicularis pex10 mRNA for Peroxisome assembly protein 10, complete cds Length = 1321 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 243 cacactctgcggccacctcttctgctgg 270 ||||| |||||||||||| ||||||||| Sbjct: 927 cacaccctgcggccacctgttctgctgg 954
>gb|AF017735.1|AF017735 Mus musculus paired-like homeobox (Epx) mRNA, transcript A, complete cds Length = 1408 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 487 ttccccaacgccaaccctaacccc 510 ||||||||| |||||||||||||| Sbjct: 1158 ttccccaaccccaaccctaacccc 1181
>gb|AF017734.1|AF017734 Mus musculus paired-like homeobox (Epx) mRNA, transcript B, complete cds Length = 1325 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 487 ttccccaacgccaaccctaacccc 510 ||||||||| |||||||||||||| Sbjct: 1075 ttccccaaccccaaccctaacccc 1098
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 gagcgtggccggcgacggcg 190 |||||||||||||||||||| Sbjct: 4674317 gagcgtggccggcgacggcg 4674336
>gb|AF085715.1|AF085715 Mus musculus homeobox protein SPX1 mRNA, complete cds Length = 1616 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 487 ttccccaacgccaaccctaacccc 510 ||||||||| |||||||||||||| Sbjct: 1359 ttccccaaccccaaccctaacccc 1382
>gb|AF004211.1|AF004211 Mus musculus paired-like homeodomain containing protein (Etx) mRNA, complete cds Length = 1720 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 487 ttccccaacgccaaccctaacccc 510 ||||||||| |||||||||||||| Sbjct: 1446 ttccccaaccccaaccctaacccc 1469
>dbj|D26328.1|CHKESTPC13 Gallus gallus mRNA for mouse dbpB/YB-1 protein homologue, complete cds, clone CLFEST34 Length = 1525 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ccgccggcgggaggcgccgc 59 |||||||||||||||||||| Sbjct: 279 ccgccggcgggaggcgccgc 260
>gb|L13032.1|CHKCSYB1 Gallus gallus YB-1 protein mRNA, complete cds Length = 1524 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ccgccggcgggaggcgccgc 59 |||||||||||||||||||| Sbjct: 273 ccgccggcgggaggcgccgc 254 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,688,356 Number of Sequences: 3902068 Number of extensions: 3688356 Number of successful extensions: 91858 Number of sequences better than 10.0: 107 Number of HSP's better than 10.0 without gapping: 109 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89665 Number of HSP's gapped (non-prelim): 2187 length of query: 588 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 565 effective length of database: 17,143,297,704 effective search space: 9685963202760 effective search space used: 9685963202760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
