ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart25e10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 254 bits (128), Expect = 3e-64 Identities = 271/316 (85%), Gaps = 2/316 (0%) Strand = Plus / Minus Query: 259 ggccgctctgcgtcgtgaggccgaccgacgcctcccacgtccaggccgccgtgctctgcg 318 |||||||||||||||||| ||| ||| |||| || |||||||||||||||||||| |||| Sbjct: 20461909 ggccgctctgcgtcgtgaagcccaccaacgcgtcgcacgtccaggccgccgtgctgtgcg 20461850 Query: 319 gccgcacgcagggcgtgcgtctccgcgtgcgcagcggcgggcacgactacgagggcctgt 378 ||||| || || ||||| |||||||||||||||||||||||||||||||||||||| | Sbjct: 20461849 gccgccgccacggggtgcgcctccgcgtgcgcagcggcgggcacgactacgagggcctct 20461790 Query: 379 cgtaccggtcggtgcggcccgaggtgttcggagtggtcgacctcgccgacctccgcgccg 438 |||||||||| ||||| | |||||||||| |||||||||||||||| ||||||| ||| Sbjct: 20461789 cgtaccggtccgtgcgccaggaggtgttcgccgtggtcgacctcgccggcctccgctccg 20461730 Query: 439 tgagtgtgaatcagtcg-gagaccactgcttgggtcgactccggcgcgaccatcggggag 497 || | || || | | || | | |||| || ||||| |||||||||||||| |||||||| Sbjct: 20461729 tgcgcgtcaa-ccgccgcgcggccaccgcgtgggtggactccggcgcgacggtcggggag 20461671 Query: 498 ctgtactacaccatcgccaaggacaactcccagctcgcgttcccggccggcctgtgcccg 557 |||||||| || ||||||||| || || |||||||||||| ||||||||||||||| Sbjct: 20461670 atgtactacgccgtcgccaaggcggacgccgggctcgcgttccccgccggcctgtgcccg 20461611 Query: 558 accatcggcgtgggcg 573 |||||||||||||||| Sbjct: 20461610 accatcggcgtgggcg 20461595 Score = 206 bits (104), Expect = 6e-50 Identities = 179/204 (87%) Strand = Plus / Minus Query: 185 gagctcgagcagcttcgccggcgtgcttgtctcctccattaggagcgccagattcttcac 244 |||||||||||||||||||| |||||| ||||||||||| ||| | ||| || |||| Sbjct: 20438169 gagctcgagcagcttcgccgacgtgctcgtctcctccatccggaaccccatgtttttcaa 20438110 Query: 245 caacaccacggtgaggccgctctgcgtcgtgaggccgaccgacgcctcccacgtccaggc 304 |||| |||||| ||||||||||||| |||| | |||| ||||||| || ||||||||||| Sbjct: 20438109 caacgccacggcgaggccgctctgcatcgtcacgccggccgacgcgtcgcacgtccaggc 20438050 Query: 305 cgccgtgctctgcggccgcacgcagggcgtgcgtctccgcgtgcgcagcggcgggcacga 364 ||||||||||||||||||| | |||| ||||| ||||||| |||||||||||||||||| Sbjct: 20438049 cgccgtgctctgcggccgcgccgagggggtgcgcctccgcgcgcgcagcggcgggcacga 20437990 Query: 365 ctacgagggcctgtcgtaccggtc 388 |||||||||||| ||||||||||| Sbjct: 20437989 ctacgagggcctctcgtaccggtc 20437966 Score = 147 bits (74), Expect = 5e-32 Identities = 134/154 (87%) Strand = Plus / Minus Query: 286 acgcctcccacgtccaggccgccgtgctctgcggccgcacgcagggcgtgcgtctccgcg 345 |||||||||||||||||||||||||||||||||||||| | | ||||| || |||||| Sbjct: 20486354 acgcctcccacgtccaggccgccgtgctctgcggccgccggaacggcgtccgcctccgca 20486295 Query: 346 tgcgcagcggcgggcacgactacgagggcctgtcgtaccggtcggtgcggcccgaggtgt 405 | ||||||||||||||||||||||||||||| |||||| |||||| |||||| ||| || Sbjct: 20486294 tccgcagcggcgggcacgactacgagggcctctcgtacaggtcggagcggccggagacgt 20486235 Query: 406 tcggagtggtcgacctcgccgacctccgcgccgt 439 ||| ||| ||||||||| | || |||||||||| Sbjct: 20486234 tcgccgtgctcgacctcgtcaacatccgcgccgt 20486201 Score = 85.7 bits (43), Expect = 1e-13 Identities = 49/51 (96%) Strand = Plus / Minus Query: 340 tccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtaccggtcgg 390 ||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct: 20421524 tccgcgtgcgcagcggcggccacgactacgagggcctctcgtaccggtcgg 20421474 Score = 81.8 bits (41), Expect = 2e-12 Identities = 83/97 (85%) Strand = Plus / Minus Query: 289 cctcccacgtccaggccgccgtgctctgcggccgcacgcagggcgtgcgtctccgcgtgc 348 |||||||| ||||||||||||| ||||||||||| ||| | || || |||||| || Sbjct: 20466019 cctcccacatccaggccgccgtcgtctgcggccgccggcatcgtgtccgcgtccgcgcgc 20465960 Query: 349 gcagcggcgggcacgactacgagggcctgtcgtaccg 385 ||||||||||||||||||||||||| || |||||||| Sbjct: 20465959 gcagcggcgggcacgactacgaggggctctcgtaccg 20465923 Score = 81.8 bits (41), Expect = 2e-12 Identities = 86/101 (85%) Strand = Plus / Minus Query: 468 tgggtcgactccggcgcgaccatcggggagctgtactacaccatcgccaaggacaactcc 527 ||||| || ||||||||| | |||||||||||||||||||| |||| ||| |||| | Sbjct: 20437877 tgggtggagtccggcgcgtcgctcggggagctgtactacaccgtcgcgaagagcaacccg 20437818 Query: 528 cagctcgcgttcccggccggcctgtgcccgaccatcggcgt 568 ||| ||||||||||||||| ||||||||||||||||||| Sbjct: 20437817 gggctggcgttcccggccggcgtgtgcccgaccatcggcgt 20437777 Score = 75.8 bits (38), Expect = 1e-10 Identities = 89/106 (83%) Strand = Plus / Minus Query: 468 tgggtcgactccggcgcgaccatcggggagctgtactacaccatcgccaaggacaactcc 527 ||||| |||||||||||||| |||||||| |||||||| |||||| |||| | | | Sbjct: 20486172 tgggtggactccggcgcgacgctcggggagatgtactacgccatcgggaaggccggcggc 20486113 Query: 528 cagctcgcgttcccggccggcctgtgcccgaccatcggcgtgggcg 573 | | |||||||||||||||||||||| |||||| ||||||| |||| Sbjct: 20486112 cggatcgcgttcccggccggcctgtgtccgaccgtcggcgtcggcg 20486067 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 340 tccgcgtgcgcagcggcgggcacgactacgagggcct 376 |||||| |||||||||||||||||||||||||||||| Sbjct: 20389511 tccgcgcgcgcagcggcgggcacgactacgagggcct 20389475 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 282 accgacgcctcccacgtccaggccgccgtgctctgcggc 320 ||||||||||| ||||||||||||||||||| ||||||| Sbjct: 20404834 accgacgcctcgcacgtccaggccgccgtgcgctgcggc 20404796 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 348 cgcagcggcgggcacgactacgagggcctgtcgtaccg 385 |||||||||||||| ||||||||||||||||| ||||| Sbjct: 20404768 cgcagcggcgggcatgactacgagggcctgtcctaccg 20404731 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 534 gcgttcccggccggcctgtgcccgaccatcggcgt 568 ||||||||||| ||| ||||||||||||||||||| Sbjct: 20421330 gcgttcccggcgggcgtgtgcccgaccatcggcgt 20421296 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 468 tgggtcgactccggcgcgaccatcggggagctgtactacaccatcgccaa 517 ||||||| |||||||||||| |||| ||| |||||||| |||||||||| Sbjct: 20404639 tgggtcggctccggcgcgacgctcggcgaggtgtactacgccatcgccaa 20404590 Score = 44.1 bits (22), Expect = 0.50 Identities = 34/38 (89%) Strand = Plus / Minus Query: 531 ctcgcgttcccggccggcctgtgcccgaccatcggcgt 568 ||||||||||||||||| | ||||||||| ||||||| Sbjct: 20389317 ctcgcgttcccggccggtgtctgcccgaccgtcggcgt 20389280 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Minus Query: 159 atacctagcgagctcctgtacacccagagctcg 191 ||||| ||| ||||||||||||| ||||||||| Sbjct: 20486478 atacccagccagctcctgtacacgcagagctcg 20486446 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 cctcgccgacctccgcgccg 438 |||||||||||||||||||| Sbjct: 30408889 cctcgccgacctccgcgccg 30408908
>dbj|AP003686.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0659D09 Length = 168253 Score = 254 bits (128), Expect = 3e-64 Identities = 271/316 (85%), Gaps = 2/316 (0%) Strand = Plus / Minus Query: 259 ggccgctctgcgtcgtgaggccgaccgacgcctcccacgtccaggccgccgtgctctgcg 318 |||||||||||||||||| ||| ||| |||| || |||||||||||||||||||| |||| Sbjct: 34204 ggccgctctgcgtcgtgaagcccaccaacgcgtcgcacgtccaggccgccgtgctgtgcg 34145 Query: 319 gccgcacgcagggcgtgcgtctccgcgtgcgcagcggcgggcacgactacgagggcctgt 378 ||||| || || ||||| |||||||||||||||||||||||||||||||||||||| | Sbjct: 34144 gccgccgccacggggtgcgcctccgcgtgcgcagcggcgggcacgactacgagggcctct 34085 Query: 379 cgtaccggtcggtgcggcccgaggtgttcggagtggtcgacctcgccgacctccgcgccg 438 |||||||||| ||||| | |||||||||| |||||||||||||||| ||||||| ||| Sbjct: 34084 cgtaccggtccgtgcgccaggaggtgttcgccgtggtcgacctcgccggcctccgctccg 34025 Query: 439 tgagtgtgaatcagtcg-gagaccactgcttgggtcgactccggcgcgaccatcggggag 497 || | || || | | || | | |||| || ||||| |||||||||||||| |||||||| Sbjct: 34024 tgcgcgtcaa-ccgccgcgcggccaccgcgtgggtggactccggcgcgacggtcggggag 33966 Query: 498 ctgtactacaccatcgccaaggacaactcccagctcgcgttcccggccggcctgtgcccg 557 |||||||| || ||||||||| || || |||||||||||| ||||||||||||||| Sbjct: 33965 atgtactacgccgtcgccaaggcggacgccgggctcgcgttccccgccggcctgtgcccg 33906 Query: 558 accatcggcgtgggcg 573 |||||||||||||||| Sbjct: 33905 accatcggcgtgggcg 33890 Score = 206 bits (104), Expect = 6e-50 Identities = 179/204 (87%) Strand = Plus / Minus Query: 185 gagctcgagcagcttcgccggcgtgcttgtctcctccattaggagcgccagattcttcac 244 |||||||||||||||||||| |||||| ||||||||||| ||| | ||| || |||| Sbjct: 10464 gagctcgagcagcttcgccgacgtgctcgtctcctccatccggaaccccatgtttttcaa 10405 Query: 245 caacaccacggtgaggccgctctgcgtcgtgaggccgaccgacgcctcccacgtccaggc 304 |||| |||||| ||||||||||||| |||| | |||| ||||||| || ||||||||||| Sbjct: 10404 caacgccacggcgaggccgctctgcatcgtcacgccggccgacgcgtcgcacgtccaggc 10345 Query: 305 cgccgtgctctgcggccgcacgcagggcgtgcgtctccgcgtgcgcagcggcgggcacga 364 ||||||||||||||||||| | |||| ||||| ||||||| |||||||||||||||||| Sbjct: 10344 cgccgtgctctgcggccgcgccgagggggtgcgcctccgcgcgcgcagcggcgggcacga 10285 Query: 365 ctacgagggcctgtcgtaccggtc 388 |||||||||||| ||||||||||| Sbjct: 10284 ctacgagggcctctcgtaccggtc 10261 Score = 147 bits (74), Expect = 5e-32 Identities = 134/154 (87%) Strand = Plus / Minus Query: 286 acgcctcccacgtccaggccgccgtgctctgcggccgcacgcagggcgtgcgtctccgcg 345 |||||||||||||||||||||||||||||||||||||| | | ||||| || |||||| Sbjct: 58649 acgcctcccacgtccaggccgccgtgctctgcggccgccggaacggcgtccgcctccgca 58590 Query: 346 tgcgcagcggcgggcacgactacgagggcctgtcgtaccggtcggtgcggcccgaggtgt 405 | ||||||||||||||||||||||||||||| |||||| |||||| |||||| ||| || Sbjct: 58589 tccgcagcggcgggcacgactacgagggcctctcgtacaggtcggagcggccggagacgt 58530 Query: 406 tcggagtggtcgacctcgccgacctccgcgccgt 439 ||| ||| ||||||||| | || |||||||||| Sbjct: 58529 tcgccgtgctcgacctcgtcaacatccgcgccgt 58496 Score = 81.8 bits (41), Expect = 2e-12 Identities = 83/97 (85%) Strand = Plus / Minus Query: 289 cctcccacgtccaggccgccgtgctctgcggccgcacgcagggcgtgcgtctccgcgtgc 348 |||||||| ||||||||||||| ||||||||||| ||| | || || |||||| || Sbjct: 38314 cctcccacatccaggccgccgtcgtctgcggccgccggcatcgtgtccgcgtccgcgcgc 38255 Query: 349 gcagcggcgggcacgactacgagggcctgtcgtaccg 385 ||||||||||||||||||||||||| || |||||||| Sbjct: 38254 gcagcggcgggcacgactacgaggggctctcgtaccg 38218 Score = 81.8 bits (41), Expect = 2e-12 Identities = 86/101 (85%) Strand = Plus / Minus Query: 468 tgggtcgactccggcgcgaccatcggggagctgtactacaccatcgccaaggacaactcc 527 ||||| || ||||||||| | |||||||||||||||||||| |||| ||| |||| | Sbjct: 10172 tgggtggagtccggcgcgtcgctcggggagctgtactacaccgtcgcgaagagcaacccg 10113 Query: 528 cagctcgcgttcccggccggcctgtgcccgaccatcggcgt 568 ||| ||||||||||||||| ||||||||||||||||||| Sbjct: 10112 gggctggcgttcccggccggcgtgtgcccgaccatcggcgt 10072 Score = 75.8 bits (38), Expect = 1e-10 Identities = 89/106 (83%) Strand = Plus / Minus Query: 468 tgggtcgactccggcgcgaccatcggggagctgtactacaccatcgccaaggacaactcc 527 ||||| |||||||||||||| |||||||| |||||||| |||||| |||| | | | Sbjct: 58467 tgggtggactccggcgcgacgctcggggagatgtactacgccatcgggaaggccggcggc 58408 Query: 528 cagctcgcgttcccggccggcctgtgcccgaccatcggcgtgggcg 573 | | |||||||||||||||||||||| |||||| ||||||| |||| Sbjct: 58407 cggatcgcgttcccggccggcctgtgtccgaccgtcggcgtcggcg 58362 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Minus Query: 159 atacctagcgagctcctgtacacccagagctcg 191 ||||| ||| ||||||||||||| ||||||||| Sbjct: 58773 atacccagccagctcctgtacacgcagagctcg 58741
>dbj|AK073505.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046H14, full insert sequence Length = 1813 Score = 254 bits (128), Expect = 3e-64 Identities = 271/316 (85%), Gaps = 2/316 (0%) Strand = Plus / Plus Query: 259 ggccgctctgcgtcgtgaggccgaccgacgcctcccacgtccaggccgccgtgctctgcg 318 |||||||||||||||||| ||| ||| |||| || |||||||||||||||||||| |||| Sbjct: 278 ggccgctctgcgtcgtgaagcccaccaacgcgtcgcacgtccaggccgccgtgctgtgcg 337 Query: 319 gccgcacgcagggcgtgcgtctccgcgtgcgcagcggcgggcacgactacgagggcctgt 378 ||||| || || ||||| |||||||||||||||||||||||||||||||||||||| | Sbjct: 338 gccgccgccacggggtgcgcctccgcgtgcgcagcggcgggcacgactacgagggcctct 397 Query: 379 cgtaccggtcggtgcggcccgaggtgttcggagtggtcgacctcgccgacctccgcgccg 438 |||||||||| ||||| | |||||||||| |||||||||||||||| ||||||| ||| Sbjct: 398 cgtaccggtccgtgcgccaggaggtgttcgccgtggtcgacctcgccggcctccgctccg 457 Query: 439 tgagtgtgaatcagtcg-gagaccactgcttgggtcgactccggcgcgaccatcggggag 497 || | || || | | || | | |||| || ||||| |||||||||||||| |||||||| Sbjct: 458 tgcgcgtcaa-ccgccgcgcggccaccgcgtgggtggactccggcgcgacggtcggggag 516 Query: 498 ctgtactacaccatcgccaaggacaactcccagctcgcgttcccggccggcctgtgcccg 557 |||||||| || ||||||||| || || |||||||||||| ||||||||||||||| Sbjct: 517 atgtactacgccgtcgccaaggcggacgccgggctcgcgttccccgccggcctgtgcccg 576 Query: 558 accatcggcgtgggcg 573 |||||||||||||||| Sbjct: 577 accatcggcgtgggcg 592
>dbj|AK109673.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-B05, full insert sequence Length = 1972 Score = 147 bits (74), Expect = 5e-32 Identities = 134/154 (87%) Strand = Plus / Plus Query: 286 acgcctcccacgtccaggccgccgtgctctgcggccgcacgcagggcgtgcgtctccgcg 345 |||||||||||||||||||||||||||||||||||||| | | ||||| || |||||| Sbjct: 318 acgcctcccacgtccaggccgccgtgctctgcggccgccggaacggcgtccgcctccgca 377 Query: 346 tgcgcagcggcgggcacgactacgagggcctgtcgtaccggtcggtgcggcccgaggtgt 405 | ||||||||||||||||||||||||||||| |||||| |||||| |||||| ||| || Sbjct: 378 tccgcagcggcgggcacgactacgagggcctctcgtacaggtcggagcggccggagacgt 437 Query: 406 tcggagtggtcgacctcgccgacctccgcgccgt 439 ||| ||| ||||||||| | || |||||||||| Sbjct: 438 tcgccgtgctcgacctcgtcaacatccgcgccgt 471 Score = 75.8 bits (38), Expect = 1e-10 Identities = 89/106 (83%) Strand = Plus / Plus Query: 468 tgggtcgactccggcgcgaccatcggggagctgtactacaccatcgccaaggacaactcc 527 ||||| |||||||||||||| |||||||| |||||||| |||||| |||| | | | Sbjct: 500 tgggtggactccggcgcgacgctcggggagatgtactacgccatcgggaaggccggcggc 559 Query: 528 cagctcgcgttcccggccggcctgtgcccgaccatcggcgtgggcg 573 | | |||||||||||||||||||||| |||||| ||||||| |||| Sbjct: 560 cggatcgcgttcccggccggcctgtgtccgaccgtcggcgtcggcg 605 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 159 atacctagcgagctcctgtacacccagagctcg 191 ||||| ||| ||||||||||||| ||||||||| Sbjct: 194 atacccagccagctcctgtacacgcagagctcg 226
>gb|AC133608.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0085G12, complete sequence Length = 121470 Score = 125 bits (63), Expect = 2e-25 Identities = 137/159 (86%), Gaps = 2/159 (1%) Strand = Plus / Minus Query: 283 ccgacgcctcccacgtccaggccgccgtgctctgcggccgcacgcag-ggcgtgcgtctc 341 ||||||| |||||||||||||||||||||| ||||||| | || || ||||| || ||| Sbjct: 74484 ccgacgcgtcccacgtccaggccgccgtgcggtgcggccac-cggagcggcgtccgcctc 74426 Query: 342 cgcgtgcgcagcggcgggcacgactacgagggcctgtcgtaccggtcggtgcggcccgag 401 ||||||||||||||||||||||||||||||||||| |||||||| | ||||| ||||| Sbjct: 74425 cgcgtgcgcagcggcgggcacgactacgagggcctctcgtaccgcgccgtgcgcgccgag 74366 Query: 402 gtgttcggagtggtcgacctcgccgacctccgcgccgtg 440 ||||| ||| |||||||||||| |||||||||||| Sbjct: 74365 acgttcgccgtgctcgacctcgccgggctccgcgccgtg 74327
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 125 bits (63), Expect = 2e-25 Identities = 137/159 (86%), Gaps = 2/159 (1%) Strand = Plus / Minus Query: 283 ccgacgcctcccacgtccaggccgccgtgctctgcggccgcacgcag-ggcgtgcgtctc 341 ||||||| |||||||||||||||||||||| ||||||| | || || ||||| || ||| Sbjct: 17006877 ccgacgcgtcccacgtccaggccgccgtgcggtgcggccac-cggagcggcgtccgcctc 17006819 Query: 342 cgcgtgcgcagcggcgggcacgactacgagggcctgtcgtaccggtcggtgcggcccgag 401 ||||||||||||||||||||||||||||||||||| |||||||| | ||||| ||||| Sbjct: 17006818 cgcgtgcgcagcggcgggcacgactacgagggcctctcgtaccgcgccgtgcgcgccgag 17006759 Query: 402 gtgttcggagtggtcgacctcgccgacctccgcgccgtg 440 ||||| ||| |||||||||||| |||||||||||| Sbjct: 17006758 acgttcgccgtgctcgacctcgccgggctccgcgccgtg 17006720
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 125 bits (63), Expect = 2e-25 Identities = 137/159 (86%), Gaps = 2/159 (1%) Strand = Plus / Minus Query: 283 ccgacgcctcccacgtccaggccgccgtgctctgcggccgcacgcag-ggcgtgcgtctc 341 ||||||| |||||||||||||||||||||| ||||||| | || || ||||| || ||| Sbjct: 17101529 ccgacgcgtcccacgtccaggccgccgtgcggtgcggccac-cggagcggcgtccgcctc 17101471 Query: 342 cgcgtgcgcagcggcgggcacgactacgagggcctgtcgtaccggtcggtgcggcccgag 401 ||||||||||||||||||||||||||||||||||| |||||||| | ||||| ||||| Sbjct: 17101470 cgcgtgcgcagcggcgggcacgactacgagggcctctcgtaccgcgccgtgcgcgccgag 17101411 Query: 402 gtgttcggagtggtcgacctcgccgacctccgcgccgtg 440 ||||| ||| |||||||||||| |||||||||||| Sbjct: 17101410 acgttcgccgtgctcgacctcgccgggctccgcgccgtg 17101372
>gb|AY451241.1| Cynodon dactylon FAD-linked oxidoreductase BG60 mRNA, complete cds Length = 1569 Score = 123 bits (62), Expect = 7e-25 Identities = 98/110 (89%) Strand = Plus / Plus Query: 279 ccgaccgacgcctcccacgtccaggccgccgtgctctgcggccgcacgcagggcgtgcgt 338 |||||| ||||||||||| |||||||||||||| | ||||||||| ||| ||| |||| Sbjct: 256 ccgaccaacgcctcccacatccaggccgccgtggtgtgcggccgccggcacggcatgcgc 315 Query: 339 ctccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtaccggtc 388 ||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct: 316 atccgcgtgcgcagtggcgggcacgactacgaggggctgtcgtaccggtc 365 Score = 52.0 bits (26), Expect = 0.002 Identities = 86/106 (81%) Strand = Plus / Plus Query: 468 tgggtcgactccggcgcgaccatcggggagctgtactacaccatcgccaaggacaactcc 527 ||||| |||||||||||| |||| || || |||||| ||||||||||| || | || Sbjct: 445 tgggtggactccggcgcgcagctcggcgacctctactacggcatcgccaaggccagcccc 504 Query: 528 cagctcgcgttcccggccggcctgtgcccgaccatcggcgtgggcg 573 |||| | |||||| |||||| ||||| ||||||||||||| |||| Sbjct: 505 aagcttgggttccccgccggcgtgtgcacgaccatcggcgtcggcg 550
>gb|BT009387.1| Triticum aestivum clone wlm96.pk035.d7:fis, full insert mRNA sequence Length = 1805 Score = 123 bits (62), Expect = 7e-25 Identities = 100/110 (90%), Gaps = 2/110 (1%) Strand = Plus / Plus Query: 286 acgcctcccacgtccaggccgccgtgctctgcggccgcacgcagggcg-tgcgtctccgc 344 ||||||||||||| |||||||||||||| ||||||||| || || | | |||| ||||| Sbjct: 281 acgcctcccacgtgcaggccgccgtgctgtgcggccgc-cggagcgggctgcgcatccgc 339 Query: 345 gtgcgcagcggcgggcacgactacgagggcctgtcgtaccggtcggtgcg 394 |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 340 gtgcgcagcggcgggcacgactacgagggcctgtcgtaccggtccgtgcg 389
>emb|AJ512487.2|PPR512487 Phleum pratense partial phlp4 gene for pollen allergen Phl p 4, allele A1 Length = 1567 Score = 119 bits (60), Expect = 1e-23 Identities = 117/136 (86%) Strand = Plus / Plus Query: 286 acgcctcccacgtccaggccgccgtgctctgcggccgcacgcagggcgtgcgtctccgcg 345 ||||||||||| ||||| |||||||| | ||||||||| ||| || || || |||||| Sbjct: 206 acgcctcccacatccagtccgccgtggtgtgcggccgccggcacggtgtccgcatccgcg 265 Query: 346 tgcgcagcggcgggcacgactacgagggcctgtcgtaccggtcggtgcggcccgaggtgt 405 ||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| || Sbjct: 266 tgcgcagcggcgggcacgactacgagggcctctcgtaccggtccctgcagcccgaggagt 325 Query: 406 tcggagtggtcgacct 421 ||| || |||||||| Sbjct: 326 tcgccgtcgtcgacct 341 Score = 71.9 bits (36), Expect = 2e-09 Identities = 39/40 (97%) Strand = Plus / Plus Query: 534 gcgttcccggccggcctgtgcccgaccatcggcgtgggcg 573 ||||||||||||||| |||||||||||||||||||||||| Sbjct: 454 gcgttcccggccggcgtgtgcccgaccatcggcgtgggcg 493
>emb|AJ862831.1| Secale cereale partial secc4 gene for pollen allergen Sec c 4, allele B Length = 1644 Score = 113 bits (57), Expect = 6e-22 Identities = 117/137 (85%) Strand = Plus / Plus Query: 286 acgcctcccacgtccaggccgccgtgctctgcggccgcacgcagggcgtgcgtctccgcg 345 ||||||||||| ||||| |||| ||| | ||||||||| ||| ||||| || |||||| Sbjct: 251 acgcctcccacatccagtccgcggtggtgtgcggccgccggcacggcgtccgcatccgcg 310 Query: 346 tgcgcagcggcgggcacgactacgagggcctgtcgtaccggtcggtgcggcccgaggtgt 405 |||| |||||||| ||||||||||||||||||||||||||||| | ||| ||||||| || Sbjct: 311 tgcggagcggcggccacgactacgagggcctgtcgtaccggtccgagcgccccgaggcgt 370 Query: 406 tcggagtggtcgacctc 422 ||| || ||||||||| Sbjct: 371 tcgccgtcgtcgacctc 387 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Plus Query: 490 tcggggagctgtactacaccatcgccaaggacaactcccagctcgcgttcccggccggcc 549 |||| ||||| |||||| ||||||||||| ||| | || ||||||||||||||||||| Sbjct: 455 tcggcgagctctactacgccatcgccaagaacagccccgtgctcgcgttcccggccggcg 514 Query: 550 tgtgcccgaccat 562 | ||||||||||| Sbjct: 515 tttgcccgaccat 527
>emb|AJ862834.1| Hordeum vulgare partial horv4 gene for pollen allergen Hor v 4 Length = 1608 Score = 103 bits (52), Expect = 6e-19 Identities = 103/120 (85%) Strand = Plus / Plus Query: 289 cctcccacgtccaggccgccgtgctctgcggccgcacgcagggcgtgcgtctccgcgtgc 348 |||||||| ||||| | || ||| | ||||||||| ||| ||||| || |||||||||| Sbjct: 248 cctcccacatccagtctgctgtggtgtgcggccgccggcacggcgtccgcctccgcgtgc 307 Query: 349 gcagcggcgggcacgactacgagggcctgtcgtaccggtcggtgcggcccgaggtgttcg 408 | |||||||| ||||||||||||||||||||||||||||| | ||| ||||||| ||||| Sbjct: 308 ggagcggcggccacgactacgagggcctgtcgtaccggtccgagcgccccgaggcgttcg 367 Score = 54.0 bits (27), Expect = 5e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 468 tgggtcgactccggcgcgaccatcggggagctgtactacaccatcgccaaggacaactcc 527 ||||| |||||||||||| |||| ||||| |||||| ||||||||||| ||| | || Sbjct: 427 tgggtggactccggcgcgcagctcggcgagctctactacgccatcgccaagaacagcccc 486 Query: 528 cagctcgcgttcccggccggcctgtgcccgaccat 562 |||||||||||| |||||| | |||||| |||| Sbjct: 487 gtgctcgcgttcccagccggcgtttgcccgtccat 521
>emb|AJ862833.1| Triticum aestivum partial tria4 gene for pollen allergen Tri a 4, allele B Length = 1603 Score = 101 bits (51), Expect = 2e-18 Identities = 90/103 (87%) Strand = Plus / Plus Query: 286 acgcctcccacgtccaggccgccgtgctctgcggccgcacgcagggcgtgcgtctccgcg 345 ||||||||||| |||| |||| ||| | ||||||||| ||| ||||| || ||||||| Sbjct: 242 acgcctcccacatccaatccgcggtggtgtgcggccgccggcacggcgtccgcctccgcg 301 Query: 346 tgcgcagcggcgggcacgactacgagggcctgtcgtaccggtc 388 |||| |||||||| ||||||||||||||||||||||||||||| Sbjct: 302 tgcggagcggcggccacgactacgagggcctgtcgtaccggtc 344 Score = 67.9 bits (34), Expect = 3e-08 Identities = 88/106 (83%) Strand = Plus / Plus Query: 468 tgggtcgactccggcgcgaccatcggggagctgtactacaccatcgccaaggacaactcc 527 |||||||| ||||||||| |||| ||||| |||||| ||||||| ||| ||| | || Sbjct: 424 tgggtcgaatccggcgcgcagctcggcgagctctactacgccatcgcgaagaacagcccc 483 Query: 528 cagctcgcgttcccggccggcctgtgcccgaccatcggcgtgggcg 573 ||||||||||||||||||| | |||||| |||||||||| |||| Sbjct: 484 gtgctcgcgttcccggccggcgtctgcccgtccatcggcgtcggcg 529
>emb|AJ512488.2|PPR512488 Phleum pratense partial phlp4 gene for pollen allergen Phl p 4, allele B1 Length = 1580 Score = 97.6 bits (49), Expect = 4e-17 Identities = 112/133 (84%) Strand = Plus / Plus Query: 290 ctcccacgtccaggccgccgtgctctgcggccgcacgcagggcgtgcgtctccgcgtgcg 349 ||||||| ||||| |||||||| | ||||||||| || |||| || |||||||||| Sbjct: 210 ctcccacatccagtccgccgtggtgtgcggccgccgccacagcgtccgcatccgcgtgcg 269 Query: 350 cagcggcgggcacgactacgagggcctgtcgtaccggtcggtgcggcccgaggtgttcgg 409 ||||||||||||||||||||||||||| ||||||||||| ||| ||||||| ||||| Sbjct: 270 cagcggcgggcacgactacgagggcctctcgtaccggtctttgcagcccgagacgttcgc 329 Query: 410 agtggtcgacctc 422 || ||||||||| Sbjct: 330 cgtcgtcgacctc 342 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 534 gcgttcccggccggcctgtgcccgaccatcggcgtgggcg 573 ||||||||||||||| |||||||||| ||||| ||||||| Sbjct: 454 gcgttcccggccggcgtgtgcccgacgatcggagtgggcg 493
>gb|DQ251188.1| Phleum pratense major pollen allergen Phl p 4 precursor, mRNA, complete cds Length = 1741 Score = 97.6 bits (49), Expect = 4e-17 Identities = 112/133 (84%) Strand = Plus / Plus Query: 290 ctcccacgtccaggccgccgtgctctgcggccgcacgcagggcgtgcgtctccgcgtgcg 349 ||||||| ||||| |||||||| | ||||||||| || |||| || |||||||||| Sbjct: 296 ctcccacatccagtccgccgtggtgtgcggccgccgccacagcgtccgcatccgcgtgcg 355 Query: 350 cagcggcgggcacgactacgagggcctgtcgtaccggtcggtgcggcccgaggtgttcgg 409 ||||||||||||||||||||||||||| ||||||||||| ||| ||||||| ||||| Sbjct: 356 cagcggcgggcacgactacgagggcctctcgtaccggtctttgcagcccgagacgttcgc 415 Query: 410 agtggtcgacctc 422 || ||||||||| Sbjct: 416 cgtcgtcgacctc 428 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 534 gcgttcccggccggcctgtgcccgaccatcggcgtgggcg 573 ||||||||||||||| |||||||||| ||||| ||||||| Sbjct: 540 gcgttcccggccggcgtgtgcccgacgatcggagtgggcg 579
>emb|AJ862830.1| Secale cereale partial secc4 gene for pollen allergen Sec c 4, allele A Length = 1603 Score = 93.7 bits (47), Expect = 6e-16 Identities = 89/103 (86%) Strand = Plus / Plus Query: 286 acgcctcccacgtccaggccgccgtgctctgcggccgcacgcagggcgtgcgtctccgcg 345 ||||||| ||| ||||| |||| ||| | ||||||||| ||| ||| | || ||||||| Sbjct: 245 acgcctcgcacatccagtccgcggtggtgtgcggccgccggcacggcatccgcctccgcg 304 Query: 346 tgcgcagcggcgggcacgactacgagggcctgtcgtaccggtc 388 |||| |||||||| ||||||||||||||||||||||||||||| Sbjct: 305 tgcggagcggcggccacgactacgagggcctgtcgtaccggtc 347 Score = 60.0 bits (30), Expect = 8e-06 Identities = 87/106 (82%) Strand = Plus / Plus Query: 468 tgggtcgactccggcgcgaccatcggggagctgtactacaccatcgccaaggacaactcc 527 |||||||| ||||||||| |||| ||||| |||||| | ||||||||| ||| | || Sbjct: 427 tgggtcgaatccggcgcgcagctcggcgagctctactacgcgatcgccaagaacagcccc 486 Query: 528 cagctcgcgttcccggccggcctgtgcccgaccatcggcgtgggcg 573 ||||||||||||||| ||| | |||||| |||||||||| |||| Sbjct: 487 gtgctcgcgttcccggctggcgtctgcccgtccatcggcgtcggcg 532
>dbj|AP004731.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0016D02 Length = 157822 Score = 85.7 bits (43), Expect = 1e-13 Identities = 49/51 (96%) Strand = Plus / Minus Query: 340 tccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtaccggtcgg 390 ||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct: 144919 tccgcgtgcgcagcggcggccacgactacgagggcctctcgtaccggtcgg 144869 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 340 tccgcgtgcgcagcggcgggcacgactacgagggcct 376 |||||| |||||||||||||||||||||||||||||| Sbjct: 112906 tccgcgcgcgcagcggcgggcacgactacgagggcct 112870 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 282 accgacgcctcccacgtccaggccgccgtgctctgcggc 320 ||||||||||| ||||||||||||||||||| ||||||| Sbjct: 128229 accgacgcctcgcacgtccaggccgccgtgcgctgcggc 128191 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 348 cgcagcggcgggcacgactacgagggcctgtcgtaccg 385 |||||||||||||| ||||||||||||||||| ||||| Sbjct: 128163 cgcagcggcgggcatgactacgagggcctgtcctaccg 128126 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 534 gcgttcccggccggcctgtgcccgaccatcggcgt 568 ||||||||||| ||| ||||||||||||||||||| Sbjct: 144725 gcgttcccggcgggcgtgtgcccgaccatcggcgt 144691 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 468 tgggtcgactccggcgcgaccatcggggagctgtactacaccatcgccaa 517 ||||||| |||||||||||| |||| ||| |||||||| |||||||||| Sbjct: 128034 tgggtcggctccggcgcgacgctcggcgaggtgtactacgccatcgccaa 127985 Score = 44.1 bits (22), Expect = 0.50 Identities = 34/38 (89%) Strand = Plus / Minus Query: 531 ctcgcgttcccggccggcctgtgcccgaccatcggcgt 568 ||||||||||||||||| | ||||||||| ||||||| Sbjct: 112712 ctcgcgttcccggccggtgtctgcccgaccgtcggcgt 112675
>dbj|AK072611.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133A01, full insert sequence Length = 2030 Score = 85.7 bits (43), Expect = 1e-13 Identities = 49/51 (96%) Strand = Plus / Plus Query: 340 tccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtaccggtcgg 390 ||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct: 342 tccgcgtgcgcagcggcggccacgactacgagggcctctcgtaccggtcgg 392 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 534 gcgttcccggccggcctgtgcccgaccatcggcgt 568 ||||||||||| ||| ||||||||||||||||||| Sbjct: 536 gcgttcccggcgggcgtgtgcccgaccatcggcgt 570
>emb|AJ862835.1| Lolium perenne partial lolp4 gene for pollen allergen Lol p 4 Length = 1272 Score = 77.8 bits (39), Expect = 4e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 340 tccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtaccggtcggtgcggcccg 399 ||||||| ||||||||||||||||||||||||||||| |||||||| || ||| ||||| Sbjct: 36 tccgcgtacgcagcggcgggcacgactacgagggcctctcgtaccgctccctgcagcccg 95 Query: 400 aggtgttcggagtggtcgacctc 422 || |||| ||| ||||||||| Sbjct: 96 agaacttcgcagtcgtcgacctc 118 Score = 52.0 bits (26), Expect = 0.002 Identities = 86/106 (81%) Strand = Plus / Plus Query: 468 tgggtcgactccggcgcgaccatcggggagctgtactacaccatcgccaaggacaactcc 527 |||||||||||||||||| |||| ||||| |||||| ||||| ||||| | | | | Sbjct: 164 tgggtcgactccggcgcgcagctcggcgagctctactacgccatctccaagtatagccgc 223 Query: 528 cagctcgcgttcccggccggcctgtgcccgaccatcggcgtgggcg 573 ||| || |||||||| ||| | |||||||||||||||||||||| Sbjct: 224 acgctggccttcccggcaggcgtttgcccgaccatcggcgtgggcg 269
>emb|AJ862832.1| Triticum aestivum partial tria4 gene for pollen allergen Tri a 4, allele A Length = 1603 Score = 77.8 bits (39), Expect = 4e-11 Identities = 87/103 (84%) Strand = Plus / Plus Query: 286 acgcctcccacgtccaggccgccgtgctctgcggccgcacgcagggcgtgcgtctccgcg 345 ||||||| ||| ||||| |||| ||| | ||||| ||| ||| |||| || ||||||| Sbjct: 242 acgcctcgcacatccagtccgcggtggtgtgcggacgccggcacagcgtccgcctccgcg 301 Query: 346 tgcgcagcggcgggcacgactacgagggcctgtcgtaccggtc 388 | || |||||||| ||||||||||||||||||||||||||||| Sbjct: 302 tccggagcggcggccacgactacgagggcctgtcgtaccggtc 344 Score = 67.9 bits (34), Expect = 3e-08 Identities = 88/106 (83%) Strand = Plus / Plus Query: 468 tgggtcgactccggcgcgaccatcggggagctgtactacaccatcgccaaggacaactcc 527 |||||||| ||||||||| |||| ||||| |||||| ||||||| || ||| | || Sbjct: 424 tgggtcgaatccggcgcgcagctcggcgagctctactacgccatcgcgaaaaacagcccc 483 Query: 528 cagctcgcgttcccggccggcctgtgcccgaccatcggcgtgggcg 573 ||||||||||||||||||| | ||||||||||||||||| |||| Sbjct: 484 gtgctcgcgttcccggccggcgtctgcccgaccatcggcgtcggcg 529
>gb|AC144736.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0008E07, complete sequence Length = 146679 Score = 75.8 bits (38), Expect = 1e-10 Identities = 44/46 (95%) Strand = Plus / Plus Query: 340 tccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtaccg 385 |||||| |||||||||||||||||||||||||||||| |||||||| Sbjct: 106106 tccgcgcgcgcagcggcgggcacgactacgagggcctctcgtaccg 106151
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 75.8 bits (38), Expect = 1e-10 Identities = 44/46 (95%) Strand = Plus / Plus Query: 340 tccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtaccg 385 |||||| |||||||||||||||||||||||||||||| |||||||| Sbjct: 12338628 tccgcgcgcgcagcggcgggcacgactacgagggcctctcgtaccg 12338673
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 75.8 bits (38), Expect = 1e-10 Identities = 44/46 (95%) Strand = Plus / Plus Query: 340 tccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtaccg 385 |||||| |||||||||||||||||||||||||||||| |||||||| Sbjct: 7689749 tccgcgcgcgcagcggcgggcacgactacgagggcctctcgtaccg 7689794
>dbj|AP003991.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1077_A12 Length = 149089 Score = 75.8 bits (38), Expect = 1e-10 Identities = 44/46 (95%) Strand = Plus / Plus Query: 340 tccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtaccg 385 |||||| |||||||||||||||||||||||||||||| |||||||| Sbjct: 26014 tccgcgcgcgcagcggcgggcacgactacgagggcctctcgtaccg 26059
>ref|NM_192799.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3201 Score = 71.9 bits (36), Expect = 2e-09 Identities = 42/44 (95%) Strand = Plus / Minus Query: 340 tccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtac 383 |||||| |||||||||||||||||||||||||||||| |||||| Sbjct: 2462 tccgcgcgcgcagcggcgggcacgactacgagggcctctcgtac 2419
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 71.9 bits (36), Expect = 2e-09 Identities = 42/44 (95%) Strand = Plus / Plus Query: 340 tccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtac 383 |||||| |||||||||||||||||||||||||||||| |||||| Sbjct: 24483701 tccgcgcgcgcagcggcgggcacgactacgagggcctctcgtac 24483744 Score = 67.9 bits (34), Expect = 3e-08 Identities = 43/46 (93%) Strand = Plus / Minus Query: 340 tccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtaccg 385 |||||| |||||||||||||||| ||||||||||||| |||||||| Sbjct: 10209768 tccgcgcgcgcagcggcgggcacaactacgagggcctctcgtaccg 10209723
>dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0686E09 Length = 156425 Score = 71.9 bits (36), Expect = 2e-09 Identities = 42/44 (95%) Strand = Plus / Plus Query: 340 tccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtac 383 |||||| |||||||||||||||||||||||||||||| |||||| Sbjct: 64085 tccgcgcgcgcagcggcgggcacgactacgagggcctctcgtac 64128
>ref|XM_462837.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 975 Score = 67.9 bits (34), Expect = 3e-08 Identities = 43/46 (93%) Strand = Plus / Plus Query: 340 tccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtaccg 385 |||||| |||||||||||||||| ||||||||||||| |||||||| Sbjct: 674 tccgcgcgcgcagcggcgggcacaactacgagggcctctcgtaccg 719
>dbj|AP003020.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0498A12 Length = 159749 Score = 67.9 bits (34), Expect = 3e-08 Identities = 43/46 (93%) Strand = Plus / Minus Query: 340 tccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtaccg 385 |||||| |||||||||||||||| ||||||||||||| |||||||| Sbjct: 75082 tccgcgcgcgcagcggcgggcacaactacgagggcctctcgtaccg 75037
>dbj|AP003018.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0004B13 Length = 142268 Score = 67.9 bits (34), Expect = 3e-08 Identities = 43/46 (93%) Strand = Plus / Minus Query: 340 tccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtaccg 385 |||||| |||||||||||||||| ||||||||||||| |||||||| Sbjct: 134367 tccgcgcgcgcagcggcgggcacaactacgagggcctctcgtaccg 134322
>dbj|AK105176.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-104-H12, full insert sequence Length = 1757 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 282 accgacgcctcccacgtccaggccgccgtgctctgcggc 320 ||||||||||| ||||||||||||||||||| ||||||| Sbjct: 302 accgacgcctcgcacgtccaggccgccgtgcgctgcggc 340 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 348 cgcagcggcgggcacgactacgagggcctgtcgtaccg 385 |||||||||||||| ||||||||||||||||| ||||| Sbjct: 368 cgcagcggcgggcatgactacgagggcctgtcctaccg 405 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 468 tgggtcgactccggcgcgaccatcggggagctgtactacaccatcgccaa 517 ||||||| |||||||||||| |||| ||| |||||||| |||||||||| Sbjct: 497 tgggtcggctccggcgcgacgctcggcgaggtgtactacgccatcgccaa 546
>ref|XM_481787.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1650 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 340 tccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtac 383 |||||||||||||||||| |||| |||||||||||| |||||| Sbjct: 302 tccgcgtgcgcagcggcgcgcacagctacgagggcctctcgtac 345
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 340 tccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtac 383 |||||||||||||||||| |||| |||||||||||| |||||| Sbjct: 15504532 tccgcgtgcgcagcggcgcgcacagctacgagggcctctcgtac 15504489 Score = 40.1 bits (20), Expect = 7.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 348 cgcagcggcgggcacgactacgagggcctgtc 379 ||||||||||||||| |||||||||| |||| Sbjct: 3403298 cgcagcggcgggcacagctacgagggcttgtc 3403267
>dbj|AP004645.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1119_B10 Length = 148508 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 340 tccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtac 383 |||||||||||||||||| |||| |||||||||||| |||||| Sbjct: 52290 tccgcgtgcgcagcggcgcgcacagctacgagggcctctcgtac 52247
>gb|BC073248.1| Xenopus laevis MGC80593 protein, mRNA (cDNA clone MGC:80593 IMAGE:5505788), complete cds Length = 1100 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 510 atcgccaaggacaactcccagct 532 ||||||||||||||||||||||| Sbjct: 967 atcgccaaggacaactcccagct 945
>gb|AC162391.9| Mus musculus 6 BAC RP23-126H2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 209173 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 113 ttccctagcctcccctgatgacttcct 139 |||||||||||||||||| |||||||| Sbjct: 125688 ttccctagcctcccctgaggacttcct 125714
>gb|AY623658.2| Aeromicrobium erythreum putative transcriptional repressor and putative dehydrogenase/reductase genes, complete cds; erythromycin biosynthesis gene cluster, complete sequence; putative oxidoreductase and LipN genes, complete cds; monoamine oxidase gene, partial cds; and unknown gene Length = 61845 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Minus Query: 413 ggtcgacctcgccgacctccgcgccg 438 |||||||||||||||||| ||||||| Sbjct: 40376 ggtcgacctcgccgacctgcgcgccg 40351
>gb|AY542493.1| Pseudomonas fluorescens strain B52 ompB operon, complete sequence Length = 2489 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 528 cagctcgcgttcccggccggcctgt 552 |||||||||||| |||||||||||| Sbjct: 1818 cagctcgcgttcgcggccggcctgt 1794
>gb|BT017638.1| Zea mays clone EL01N0438F11.c mRNA sequence Length = 852 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 414 gtcgacctcgccgacctccgcgccg 438 ||||||| ||||||||||||||||| Sbjct: 343 gtcgaccccgccgacctccgcgccg 367
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 185 gagctcgagcagcttcgccgg 205 ||||||||||||||||||||| Sbjct: 5683728 gagctcgagcagcttcgccgg 5683708
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 506 caccatcgccaaggacaactcccag 530 ||||| ||||||||||||||||||| Sbjct: 2348520 caccaacgccaaggacaactcccag 2348496
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 337 gtctccgcgtgcgcagcggcg 357 ||||||||||||||||||||| Sbjct: 381882 gtctccgcgtgcgcagcggcg 381902
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 506 caccatcgccaaggacaactcccag 530 ||||| ||||||||||||||||||| Sbjct: 2282479 caccaacgccaaggacaactcccag 2282455
>gb|AY106132.1| Zea mays PCO073447 mRNA sequence Length = 915 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 414 gtcgacctcgccgacctccgcgccg 438 ||||||| ||||||||||||||||| Sbjct: 344 gtcgaccccgccgacctccgcgccg 368
>gb|AC007073.2|AC007073 Homo sapiens chromosome 4 clone C0310G15 map 4p16, complete sequence Length = 193772 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 122 ctcccctgatgacttcctcca 142 ||||||||||||||||||||| Sbjct: 26459 ctcccctgatgacttcctcca 26439
>ref|NM_189046.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1674 Score = 40.1 bits (20), Expect = 7.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 348 cgcagcggcgggcacgactacgagggcctgtc 379 ||||||||||||||| |||||||||| |||| Sbjct: 327 cgcagcggcgggcacagctacgagggcttgtc 358
>ref|XM_507136.1| PREDICTED Oryza sativa (japonica cultivar-group), P0498E12.107 mRNA Length = 1694 Score = 40.1 bits (20), Expect = 7.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 348 cgcagcggcgggcacgactacgagggcctgtc 379 ||||||||||||||| |||||||||| |||| Sbjct: 328 cgcagcggcgggcacagctacgagggcttgtc 359
>gb|AY648788.1| Danio rerio RNA polymerase II subunit B mRNA, partial cds Length = 1686 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 gagcgccagattcttcacca 246 |||||||||||||||||||| Sbjct: 1584 gagcgccagattcttcacca 1565
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 cgacctcgccgacctccgcg 435 |||||||||||||||||||| Sbjct: 578069 cgacctcgccgacctccgcg 578088
>ref|XM_363202.1| Magnaporthe grisea 70-15 hypothetical protein (MG08786.4) partial cds Length = 1656 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 cgtgcgcagcggcgggcacg 363 |||||||||||||||||||| Sbjct: 449 cgtgcgcagcggcgggcacg 468
>gb|AC149299.1| Populus trichocarpa clone Pop1-037B22, complete sequence Length = 143392 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 cacgactacgagggcctgtc 379 |||||||||||||||||||| Sbjct: 77569 cacgactacgagggcctgtc 77588
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 542 ggccggcctgtgcccgacca 561 |||||||||||||||||||| Sbjct: 1060933 ggccggcctgtgcccgacca 1060914
>emb|AL365335.11| Human DNA sequence from clone RP11-278E14 on chromosome 6, complete sequence Length = 160889 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 ttgtctcctccattaggagc 230 |||||||||||||||||||| Sbjct: 23433 ttgtctcctccattaggagc 23452
>emb|AL157760.9| Human DNA sequence from clone RP11-113P14 on chromosome 13 Contains the 3' end of the DCAMKL1 gene for doublecortin and CaM kinase-like 1 (DCLK KIAA0369), complete sequence Length = 108649 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 ttctcatgctacctgacatc 106 |||||||||||||||||||| Sbjct: 92763 ttctcatgctacctgacatc 92782
>gb|AY993224.1| Uncultured bacterium clone C21_j20 16S ribosomal RNA gene, partial sequence Length = 1356 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 tcctgtacacccagagctcg 191 |||||||||||||||||||| Sbjct: 842 tcctgtacacccagagctcg 823
>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29 Length = 296500 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 507 accatcgccaaggacaactcccag 530 |||| ||||||||||||||||||| Sbjct: 65345 accaacgccaaggacaactcccag 65368
>ref|XM_679121.1| PREDICTED: Danio rerio polymerase (RNA) II (DNA directed) polypeptide B, transcript variant 1 (polr2b), mRNA Length = 2844 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 gagcgccagattcttcacca 246 |||||||||||||||||||| Sbjct: 1584 gagcgccagattcttcacca 1565
>gb|AC109993.4| Homo sapiens chromosome X clone RP11-115M6 map q28, complete sequence Length = 178498 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 515 caaggacaactcccagctcg 534 |||||||||||||||||||| Sbjct: 14898 caaggacaactcccagctcg 14917
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 417 gacctcgccgacctccgcgc 436 |||||||||||||||||||| Sbjct: 4423218 gacctcgccgacctccgcgc 4423199
>dbj|AP004685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0017G10 Length = 166700 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 cctcgccgacctccgcgccg 438 |||||||||||||||||||| Sbjct: 46250 cctcgccgacctccgcgccg 46269
>dbj|AP004698.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0498E12 Length = 153523 Score = 40.1 bits (20), Expect = 7.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 348 cgcagcggcgggcacgactacgagggcctgtc 379 ||||||||||||||| |||||||||| |||| Sbjct: 36717 cgcagcggcgggcacagctacgagggcttgtc 36686
>dbj|AK104045.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-F06, full insert sequence Length = 1674 Score = 40.1 bits (20), Expect = 7.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 348 cgcagcggcgggcacgactacgagggcctgtc 379 ||||||||||||||| |||||||||| |||| Sbjct: 327 cgcagcggcgggcacagctacgagggcttgtc 358
>dbj|AK069480.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019G18, full insert sequence Length = 1694 Score = 40.1 bits (20), Expect = 7.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 348 cgcagcggcgggcacgactacgagggcctgtc 379 ||||||||||||||| |||||||||| |||| Sbjct: 328 cgcagcggcgggcacagctacgagggcttgtc 359
>gb|M15540.1|STMAMYHY S.hygroscopicus alpha-amylase gene, complete cds Length = 1842 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 412 tggtcgacctcgccgacctc 431 |||||||||||||||||||| Sbjct: 772 tggtcgacctcgccgacctc 791 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,992,546 Number of Sequences: 3902068 Number of extensions: 2992546 Number of successful extensions: 65364 Number of sequences better than 10.0: 64 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64244 Number of HSP's gapped (non-prelim): 1107 length of query: 573 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 550 effective length of database: 17,143,297,704 effective search space: 9428813737200 effective search space used: 9428813737200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
