ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart25d12 |
|---|---|
| Clone Library Name | barley_pub |
>PO2F1_HUMAN (P14859) POU domain, class 2, transcription factor 1| (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1) Length = 743 Score = 34.3 bits (77), Expect = 0.26 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 5/109 (4%) Frame = -2 Query: 524 SIKSEAADISLTISSAHSVTFVALF-IFVTGTSDATLDEAASALVGAEPDA----K*SLK 360 S+ + +A +LT+S +T A+ + VTGTSD T + A+ + A P + SL Sbjct: 466 SLVTSSAATTLTVSPVLPLTSAAVTNLSVTGTSDTTSNNTATVISTAPPASSAVTSPSLS 525 Query: 359 PLIAASNTFPDASK*PRRSCGSAPGKMSWSASTGSKSMLTPSSATSAAA 213 P +AS + +AS S S S+ M+T S +AAA Sbjct: 526 PSPSASASTSEASSASETSTTQTTSTPLSSPLGTSQVMVTASGLQTAAA 574
>YIQ9_YEAST (P40442) Hypothetical protein YIL169C precursor| Length = 995 Score = 32.7 bits (73), Expect = 0.76 Identities = 26/108 (24%), Positives = 56/108 (51%), Gaps = 5/108 (4%) Frame = -2 Query: 515 SEAADISLTIS-SAHSVTFVALFIF--VTGTSD--ATLDEAASALVGAEPDAK*SLKPLI 351 S A+D+S ++S S+ S + V+ + + TSD +++ ++AS+ G S+ Sbjct: 198 SSASDVSSSVSQSSSSASDVSSSVSQSASSTSDVSSSVSQSASSTSGVSSSGSQSVSSAS 257 Query: 350 AASNTFPDASK*PRRSCGSAPGKMSWSASTGSKSMLTPSSATSAAADG 207 +S++FP ++ + GSA S ++ + S +S + +++DG Sbjct: 258 GSSSSFPQSTSSASTASGSATSNSLSSITSSASSASATASNSLSSSDG 305
>PRGR_CANFA (Q9GLW0) Progesterone receptor (PR)| Length = 939 Score = 32.0 bits (71), Expect = 1.3 Identities = 21/73 (28%), Positives = 32/73 (43%) Frame = +1 Query: 166 ALPPPLNTKRGRCSPSAAADVAELGVSMDFDPVDALQLIFPGADPQLLRGYFEASGNVLD 345 A PP + C+P AA D + D +P D ++ P L+ E G + Sbjct: 342 AFAPPRGSPSAPCAPLAAGDFPDCAYPSDAEPKDDAFPLYGDFQPPALKIKEEEEG--AE 399 Query: 346 AAIRGFKDHLASG 384 AA R + +LA+G Sbjct: 400 AAARSPRPYLAAG 412
>MYT1_MOUSE (Q8CFC2) Myelin transcription factor 1 (MyT1) (Neural zinc finger| factor 2) (NZF-2) Length = 1127 Score = 31.6 bits (70), Expect = 1.7 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 7/57 (12%) Frame = -2 Query: 341 NTFPDASK*PRRSCGSAPGKMS-------WSASTGSKSMLTPSSATSAAADGEHRPL 192 NTFP +S SC S+PG S S S S SM +P S+ ++ D RPL Sbjct: 683 NTFPSSS-----SCSSSPGVKSPDVSQRQSSTSAPSSSMTSPQSSQASRQDEWDRPL 734
>PO2F1_PIG (Q29076) POU domain, class 2, transcription factor 1| (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1) Length = 745 Score = 31.2 bits (69), Expect = 2.2 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 5/109 (4%) Frame = -2 Query: 524 SIKSEAADISLTISSAHSVTFVALF-IFVTGTSDATLDEAASALVGAEPDA----K*SLK 360 S+ + +A +LT++ +T A+ + VTGT+D T + A+ + A P + SL Sbjct: 468 SLVTSSAATTLTVNPVLPLTSAAVTNLSVTGTTDTTSNNTATVISTAPPASSAVTSPSLS 527 Query: 359 PLIAASNTFPDASK*PRRSCGSAPGKMSWSASTGSKSMLTPSSATSAAA 213 P +AS + + S S S S+ M+T S +AAA Sbjct: 528 PSPSASGSTSEVSSASETSTTQTTSTPLSSPLGTSQVMVTASGLQTAAA 576
>YB95_SCHPO (O42970) Hypothetical serine-rich protein C1E8.05 precursor| Length = 317 Score = 30.8 bits (68), Expect = 2.9 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 5/115 (4%) Frame = -2 Query: 545 LEARFLASIKSEAADISLTISSAHSV-----TFVALFIFVTGTSDATLDEAASALVGAEP 381 L+A +I + + S TISS T + F+T +S ++S+ + P Sbjct: 108 LQACSTCTISTSSLSYSGTISSTSIAPSMIGTRTSSSYFITSSSSTPSSSSSSS--SSSP 165 Query: 380 DAK*SLKPLIAASNTFPDASK*PRRSCGSAPGKMSWSASTGSKSMLTPSSATSAA 216 + S K ++ ++ +S S S+ K S S+S+ SKS +PSS+ S++ Sbjct: 166 SSS-SSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSS 219
>DP87_DICDI (Q04503) Prespore protein DP87 precursor| Length = 555 Score = 30.8 bits (68), Expect = 2.9 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 2/103 (1%) Frame = -2 Query: 515 SEAADISLTISSAHSVTFVALFIFVTGTSDATLDEAASALVGAEPDAK*SLKPLIAASNT 336 S A + T+++ S T T T +T D +A++ A+ A S AAS+ Sbjct: 442 STIATTASTVATTTSATTAGTTTGGTTTGGSTSDSSAAS--SADSSAASSSPSSSAASSA 499 Query: 335 FPDASK*PRRSCGS--APGKMSWSASTGSKSMLTPSSATSAAA 213 AS P S S AP S SA + + S SSA+S+AA Sbjct: 500 ---ASSEPSSSAASSSAPSSASSSAPSSASSSAPSSSASSSAA 539
>PO2F1_RAT (P31503) POU domain, class 2, transcription factor 1| (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1) (Fragment) Length = 632 Score = 30.4 bits (67), Expect = 3.8 Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 5/109 (4%) Frame = -2 Query: 524 SIKSEAADISLTISSAHSVTFVALF-IFVTGTSDATLDEAASALVGAEPDA----K*SLK 360 S+ + + +LT++ +T A+ + +TGT+D+T + A+ + A P + SL Sbjct: 355 SLVTSSTATTLTVNPVLPLTSAAMTNLSLTGTTDSTSNNTATVISTAPPASSAVTSPSLS 414 Query: 359 PLIAASNTFPDASK*PRRSCGSAPGKMSWSASTGSKSMLTPSSATSAAA 213 P +AS + +AS S S S+ M+T S +AAA Sbjct: 415 PSPSASASTSEASSASETSTTQTTSTPLPSPLGASQVMVTASGLQTAAA 463
>INSRR_CAVPO (P14617) Insulin receptor-related protein precursor (EC 2.7.10.1)| (IRR) (IR-related receptor) [Contains: Insulin receptor-related protein alpha chain; Insulin receptor-related protein beta chain] Length = 1300 Score = 30.0 bits (66), Expect = 4.9 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = -2 Query: 338 TFPDASK*PRRSCGSAPGKMSWSASTGSKSML 243 TF A PRR PGK+SW A++ S +L Sbjct: 803 TFVFARTMPRREADDIPGKLSWEAASKSSVLL 834
>KAPR_BLAEM (P31320) cAMP-dependent protein kinase regulatory subunit (PKA| regulatory subunit) Length = 403 Score = 30.0 bits (66), Expect = 4.9 Identities = 21/65 (32%), Positives = 31/65 (47%) Frame = +1 Query: 148 EEDPFAALPPPLNTKRGRCSPSAAADVAELGVSMDFDPVDALQLIFPGADPQLLRGYFEA 327 +ED AA+PPP+ RGR + +A +A VDA++ + P +D Q R Sbjct: 98 DEDDEAAIPPPV-VNRGRRTSVSAESMAPTA-----HDVDAVKTVIPKSDEQRARIQASI 151 Query: 328 SGNVL 342 N L Sbjct: 152 GNNFL 156
>DUT_RAT (P70583) Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC| 3.6.1.23) (dUTPase) (dUTP pyrophosphatase) (PPAR-interacting protein 4) (PIP4) Length = 205 Score = 29.6 bits (65), Expect = 6.4 Identities = 18/54 (33%), Positives = 25/54 (46%) Frame = -2 Query: 365 LKPLIAASNTFPDASK*PRRSCGSAPGKMSWSASTGSKSMLTPSSATSAAADGE 204 L+P + S T A SCG + G +WSA TG + P+ + S A E Sbjct: 12 LQPSLLRSLTLTSAQS---LSCGGSRGVRTWSARTGPGACADPAVSVSKRARAE 62
>MYT1_HUMAN (Q01538) Myelin transcription factor 1 (MyT1) (MyTI) (Proteolipid| protein-binding protein) (PLPB1) Length = 1121 Score = 29.6 bits (65), Expect = 6.4 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 7/57 (12%) Frame = -2 Query: 341 NTFPDASK*PRRSCGSAPGKMS-------WSASTGSKSMLTPSSATSAAADGEHRPL 192 N FP +S SC S+PG S S S S SM +P S+ ++ D RPL Sbjct: 681 NAFPSSS-----SCSSSPGVKSPDASQRHSSTSAPSSSMTSPQSSQASRQDEWDRPL 732
>HIS1_BORPE (Q7VSZ2) ATP phosphoribosyltransferase (EC 2.4.2.17) (ATP-PRTase)| (ATP-PRT) Length = 223 Score = 29.3 bits (64), Expect = 8.4 Identities = 16/48 (33%), Positives = 24/48 (50%) Frame = +1 Query: 163 AALPPPLNTKRGRCSPSAAADVAELGVSMDFDPVDALQLIFPGADPQL 306 AA P L +GR +AE G+ + +P + +LI P +DP L Sbjct: 4 AAAPLTLALSKGRIFEETMPLLAEAGIEVPENPESSRKLILPTSDPGL 51
>HIS1_BORPA (Q7W2Y5) ATP phosphoribosyltransferase (EC 2.4.2.17) (ATP-PRTase)| (ATP-PRT) Length = 223 Score = 29.3 bits (64), Expect = 8.4 Identities = 16/48 (33%), Positives = 24/48 (50%) Frame = +1 Query: 163 AALPPPLNTKRGRCSPSAAADVAELGVSMDFDPVDALQLIFPGADPQL 306 AA P L +GR +AE G+ + +P + +LI P +DP L Sbjct: 4 AAAPLTLALSKGRIFEETMPLLAEAGIEVPENPESSRKLILPTSDPGL 51
>HIS1_BORBR (Q7WDY5) ATP phosphoribosyltransferase (EC 2.4.2.17) (ATP-PRTase)| (ATP-PRT) Length = 223 Score = 29.3 bits (64), Expect = 8.4 Identities = 16/48 (33%), Positives = 24/48 (50%) Frame = +1 Query: 163 AALPPPLNTKRGRCSPSAAADVAELGVSMDFDPVDALQLIFPGADPQL 306 AA P L +GR +AE G+ + +P + +LI P +DP L Sbjct: 4 AAAPLTLALSKGRIFEETMPLLAEAGIEVPENPESSRKLILPTSDPGL 51 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.131 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,870,400 Number of Sequences: 219361 Number of extensions: 1081607 Number of successful extensions: 3429 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3335 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3424 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4872342800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits)
