>KLDC4_MOUSE (Q921I2) Kelch domain-containing protein 4|
          Length = 584

 Score = 35.4 bits (80), Expect = 0.098
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 55  IHVDHRSQPRMREMLQEDSESSIQTPREGEDQDHQLRHEEEHGDPLRP-VRRGEADEE 225
           + +D +SQ  + E   E+  SS +   +GED+D Q    EE  DP  P V RGE  EE
Sbjct: 478 VEMDPKSQEWLEESDSEEDSSSDEESEDGEDKD-QEDSAEEGADPQHPEVARGEQFEE 534

>CAR2_DICDI (P34907) Cyclic AMP receptor 2 (cAMP receptor 2)|
          Length = 375

 Score = 33.1 bits (74), Expect = 0.49
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 91  EMLQEDSESSIQTPREGEDQDHQLRHEEEH 180
           + L  D+E++I+TP+E E+Q+H   H   H
Sbjct: 325 DSLSLDAENNIETPKENENQNHHHHHHHHH 354

>YSE2_CAEEL (Q09936) Hypothetical protein C53C9.2 in chromosome X|
          Length = 397

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 16/68 (23%), Positives = 29/68 (42%)
 Frame = +1

Query: 22  ASASSSHGREGIHVDHRSQPRMREMLQEDSESSIQTPREGEDQDHQLRHEEEHGDPLRPV 201
           +S  S    + +      +P   E  +E+ E  I+ P   E+++ +   EEE  + L   
Sbjct: 327 SSRQSEIDSQSVKASEPVEPEPEEEEEEEEEEKIEEPAAKEEEEEEEEEEEEEEEELEEE 386

Query: 202 RRGEADEE 225
              E +EE
Sbjct: 387 EEEEEEEE 394

>SIP1_MOUSE (Q9R0G7) Zinc finger homeobox protein 1b (Smad-interacting protein 1)|
          Length = 1215

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
 Frame = +1

Query: 4    KRSLEFASASSSHGREGIHVDHRSQPRMREMLQE-------DSESSIQTPREGE-DQDHQ 159
            KR  E   A+    RE  H+        R  LQ        DSE     PR+GE +++H+
Sbjct: 1082 KREAEEREAAEREAREKGHLGPTELLMNRAYLQSITPQGYSDSEERESMPRDGESEKEHE 1141

Query: 160  LRHEEEHGDPLRPVRRGEADEE 225
               EE +G     +RR + DEE
Sbjct: 1142 KEGEEGYG----KLRRRDGDEE 1159

>MYT1_HUMAN (Q01538) Myelin transcription factor 1 (MyT1) (MyTI) (Proteolipid|
           protein-binding protein) (PLPB1)
          Length = 1121

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 21/75 (28%), Positives = 37/75 (49%)
 Frame = +1

Query: 7   RSLEFASASSSHGREGIHVDHRSQPRMREMLQEDSESSIQTPREGEDQDHQLRHEEEHGD 186
           +SLE A++  S  ++GI + H  +    E  +E+ E   +   E E+++ +   EEE  +
Sbjct: 238 QSLEDAASEESSKQKGI-LSHEEEDEEEEEEEEEEE---EDEEEEEEEEEEEEEEEEEEE 293

Query: 187 PLRPVRRGEADEEAA 231
                   E +EEAA
Sbjct: 294 EEEEEEEEEEEEEAA 308

>OVO_DROME (P51521) Protein ovo (Protein shaven baby)|
          Length = 1351

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 13/55 (23%), Positives = 24/55 (43%)
 Frame = +1

Query: 7    RSLEFASASSSHGREGIHVDHRSQPRMREMLQEDSESSIQTPREGEDQDHQLRHE 171
            R+++     S HG    H   +  P+ + M Q   + S+Q  +  + Q  Q  H+
Sbjct: 1104 RNIDCIDDLSKHGHHSQHQQQQGSPQQQNMQQSVQQQSVQQQQSLQQQQQQQHHQ 1158

>SRCH_HUMAN (P23327) Sarcoplasmic reticulum histidine-rich calcium-binding|
           protein precursor
          Length = 699

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
 Frame = +1

Query: 31  SSSHGREGIHVDHRSQPRMRE-------MLQEDSESSIQTPREGEDQDHQLRHEE-EHGD 186
           SS  G +G H   R Q    +        L ++ E       E E++D + R E  E G 
Sbjct: 501 SSEQGEKGTHHGSRDQEDEEDEEEGHGLSLNQEEEEEEDKEEEEEEEDEERREERAEVGA 560

Query: 187 PLRPVRRGEADEE 225
           PL P    E +EE
Sbjct: 561 PLSPDHSEEEEEE 573

>NAOX_METJA (Q58065) Putative NADH oxidase (EC 1.6.99.3) (NOXase)|
          Length = 448

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
 Frame = +2

Query: 20  SPQLAPAMAEKVSTLIIEANLECEKCYRKIQKVLSKLQEKEKIRTINFDTKKNTVTL--- 190
           +PQ+ P   +     I++  LE E     + K L K+  KEK+  +  D K   V +   
Sbjct: 181 APQVLPRFLDPDMAEIVQKYLEKEGIKVMLSKPLEKIVGKEKVEAVYVDGKLYDVDMVIM 240

Query: 191 -SGPFDAAKLTKKLRCK 238
            +G     +L KK  CK
Sbjct: 241 ATGVRPNIELAKKAGCK 257

>KIF3A_MOUSE (P28741) Kinesin-like protein KIF3A (Microtubule plus end-directed|
           kinesin motor 3A)
          Length = 701

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 21/65 (32%), Positives = 38/65 (58%)
 Frame = +2

Query: 38  AMAEKVSTLIIEANLECEKCYRKIQKVLSKLQEKEKIRTINFDTKKNTVTLSGPFDAAKL 217
           A AE+   L+ E+N+E E+  R+ +++  +L+EKE+ R    D ++   +L    +A   
Sbjct: 490 AKAEEQEKLLEESNMELEERRRRAEQLRKELEEKEQER---LDIEEKYTSLQE--EAQGK 544

Query: 218 TKKLR 232
           TKKL+
Sbjct: 545 TKKLK 549

>ERBB3_MOUSE (Q61526) Receptor tyrosine-protein kinase erbB-3 precursor (EC|
            2.7.10.1) (c-erbB3) (Glial growth factor receptor)
          Length = 1339

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +1

Query: 58   HVDHRSQPRMREMLQEDSESSIQTPREGEDQDHQLRHEEEHGDPLRPVRRGEADE 222
            H+   S  R   +      S + T  E ED++++  + +  G P RP R G  +E
Sbjct: 1162 HLRGTSSSREGTLSSVGLSSVLGTEEEDEDEEYEYMNRKRRGSPARPPRPGSLEE 1216

>PTMS_RAT (P04550) Parathymosin (Zinc-binding 11.5 kDa protein)|
          Length = 101

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
 Frame = +1

Query: 1   IKRSLEFASASSSHGREGIHVDHRSQPRMREMLQEDS----ESSIQTPREGEDQDH--QL 162
           ++ + E ++      ++ +      + R +E+++E+     E   +T  +GED D   + 
Sbjct: 5   VEAAAELSAKDLKEKKDKVEEKAGRKERKKEVVEEEENGAEEEEEETAEDGEDDDEGDEE 64

Query: 163 RHEEEHGDPLRPVRRGEADEE 225
             EEE  +   PVR+  A+EE
Sbjct: 65  DEEEEEEEDEGPVRKRTAEEE 85

>PTMS_MOUSE (Q9D0J8) Parathymosin|
          Length = 100

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
 Frame = +1

Query: 1   IKRSLEFASASSSHGREGIHVDHRSQPRMREMLQEDS----ESSIQTPREGEDQDH-QLR 165
           ++ + E ++      ++ +      + R +E+++E+     E   +T  +GED D     
Sbjct: 5   VEAAAELSAKDLKEKKDKVEEKAGRKERKKEVVEEEENGAEEEEEETAEDGEDDDEGDEE 64

Query: 166 HEEEHGDPLRPVRRGEADEE 225
            EEE  +   PVR+  A+EE
Sbjct: 65  DEEEEEEDEGPVRKRTAEEE 84

>ZO1_MOUSE (P39447) Tight junction protein ZO-1 (Zonula occludens 1 protein)|
           (Zona occludens 1 protein) (Tight junction protein 1)
          Length = 1745

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +1

Query: 16  EFASASSSH-GREGIHVDHRSQPRMREMLQEDSESSIQTPREGEDQDHQLRHEEEHGDP 189
           E  S +S H GR       RSQ R  +   E S+ S Q+P++  +   + R EE    P
Sbjct: 291 EIQSLASDHSGRSHDRPPRRSQSRSPDQRSEPSDHSTQSPQQPSNGSLRSREEERMSKP 349

>ERBB3_RAT (Q62799) Receptor tyrosine-protein kinase erbB-3 precursor (EC|
            2.7.10.1) (c-erbB3)
          Length = 1339

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +1

Query: 58   HVDHRSQPRMREMLQEDSESSIQTPREGEDQDHQLRHEEEHGDPLRPVRRGEADE 222
            H+   S  R   +      S + T  E ED++++  + +  G P RP R G  +E
Sbjct: 1162 HLRGASSSREGTLSSVGLSSVLGTEEEDEDEEYEYMNRKRRGSPPRPPRPGSLEE 1216

>GLT_DROME (P33438) Glutactin precursor|
          Length = 1026

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = +1

Query: 16  EFASASSSHGREGIHVDHRSQPRMREMLQEDSESSIQTPREGEDQDHQLRHEEEHGDPLR 195
           E+  A  +  +E I    R Q R  + L++      Q PR  E QD ++R + E  + LR
Sbjct: 644 EYVRAQEARQQEFIR--EREQRRREQQLRDQQRYPQQEPR--EQQDERIRQQREQEERLR 699

Query: 196 PVRRGE 213
             R  E
Sbjct: 700 QQREQE 705

>DPOL1_SULSO (P26811) DNA polymerase 1 (EC 2.7.7.7) (DNA polymerase I)|
          Length = 882

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = +2

Query: 17  SSPQLAPAMAEKVSTLIIEANL--ECEKCYRKIQKVLSKLQEKEKIRTINFDTKKNTVTL 190
           ++P+    +  +V  L+I  N   + ++  RKI  V+    EK K +  N D     V L
Sbjct: 722 NTPEFVKKVFNEVKELMISINSPNDVKEIKRKIVDVVKGSYEKLKNKGYNLDELAFKVML 781

Query: 191 SGPFDAAKLTKKLRCKA 241
           S P DA K       KA
Sbjct: 782 SKPLDAYKKNTPQHVKA 798

>TRHY_HUMAN (Q07283) Trichohyalin|
          Length = 1898

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +1

Query: 64  DHRSQPRMREMLQEDSESSIQTPREGEDQDHQLRHEEEHGDPLRPVRRGEADE 222
           + R + ++R   +E  E  ++  +E E ++ QLR E+E     + +RR + +E
Sbjct: 332 EERREQQLRREQEERREQQLRREQEEERREQQLRREQEEERREQQLRREQEEE 384



 Score = 28.9 bits (63), Expect = 9.2
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 64  DHRSQPRMREMLQEDSESSIQTPREGEDQDHQLRHEEEHGDPLRPVRR 207
           + R Q   RE  +E  E  ++  +E E ++ QLR E+E     + +RR
Sbjct: 345 ERREQQLRREQEEERREQQLRREQEEERREQQLRREQEEERREQQLRR 392

>SUH_CIOIN (O76808) Suppressor of hairless homolog (Su(H))|
          Length = 554

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 109 SESSIQTPREGEDQDHQLRHEEEHGDPLRPVRRGEAD 219
           S S   TP  G + D    +E + GDP+ P++R   D
Sbjct: 494 SASMPPTPVSGSEDDSGRGNESDRGDPIMPIKRPALD 530

>CTPA_MYCTU (Q10876) Cation-transporting P-type ATPase A (EC 3.6.3.-)|
          Length = 761

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +2

Query: 74  ANLECEKCYRKIQKVLSKLQEKEKIRTINFDTKKNTVTLSGPFDAAKLTKKLR 232
           + + C  C  +++  L+KL        +NF T+  T+  S   DAA L + +R
Sbjct: 21  SGMSCSACAHRVESTLNKLPGVRA--AVNFGTRVATIDTSEAVDAAALCQAVR 71

>RGP1_HUMAN (P46060) Ran GTPase-activating protein 1|
          Length = 587

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 100 QEDSESSIQTPREGEDQDHQLRHEEEHGDPLRPVRRGEADEEA 228
           +E+ E   +   E E++D +   EEE  +   P +RG+ ++ A
Sbjct: 366 EEEGEEEEEEAEEEEEEDEEEEEEEEEEEEEEPQQRGQGEKSA 408

>SPR2_CAEEL (Q18240) Suppressor of presenilin 2|
          Length = 312

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +1

Query: 1   IKRSLEFASASSSHGREGIHVDHRSQPRMREMLQEDSESSIQTPREGEDQDHQLRHEEEH 180
           I  SL+     S+ G+EG       +    E + E+ E  ++   EGE+++     EEE 
Sbjct: 242 ISDSLKVDQDESADGQEG-------EDEEEEDMGEEEEDGVEEEAEGEEEEEDGAIEEEG 294

Query: 181 GD 186
           GD
Sbjct: 295 GD 296

>METX_PSESM (Q87V90) Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine|
           O-trans-acetylase) (Homoserine transacetylase) (HTA)
          Length = 379

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = -3

Query: 90  SHSRLASMINVDTFSAMAGAS*GELQ 13
           S +RLA ++N+DT++A+ G S G +Q
Sbjct: 137 SQARLADVLNIDTWAAVIGGSLGGMQ 162

>KIF3A_PONPY (Q5R4H3) Kinesin-like protein KIF3A (Microtubule plus end-directed|
           kinesin motor 3A)
          Length = 702

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 20/65 (30%), Positives = 38/65 (58%)
 Frame = +2

Query: 38  AMAEKVSTLIIEANLECEKCYRKIQKVLSKLQEKEKIRTINFDTKKNTVTLSGPFDAAKL 217
           A AE+   L+ E+N+E E+  ++ +++  +L+EKE+ R    D ++   +L    +A   
Sbjct: 491 AKAEEQEKLLEESNMELEERRKRAEQLRRELEEKEQER---LDIEEKYTSLQE--EAQGK 545

Query: 218 TKKLR 232
           TKKL+
Sbjct: 546 TKKLK 550

>KIF3A_MACFA (Q4R628) Kinesin-like protein KIF3A (Microtubule plus end-directed|
           kinesin motor 3A)
          Length = 702

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 20/65 (30%), Positives = 38/65 (58%)
 Frame = +2

Query: 38  AMAEKVSTLIIEANLECEKCYRKIQKVLSKLQEKEKIRTINFDTKKNTVTLSGPFDAAKL 217
           A AE+   L+ E+N+E E+  ++ +++  +L+EKE+ R    D ++   +L    +A   
Sbjct: 491 AKAEEQEKLLEESNMELEERRKRAEQLRRELEEKEQER---LDIEEKYTSLQE--EAQGK 545

Query: 218 TKKLR 232
           TKKL+
Sbjct: 546 TKKLK 550

>KIF3A_HUMAN (Q9Y496) Kinesin-like protein KIF3A (Microtubule plus end-directed|
           kinesin motor 3A)
          Length = 702

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 20/65 (30%), Positives = 38/65 (58%)
 Frame = +2

Query: 38  AMAEKVSTLIIEANLECEKCYRKIQKVLSKLQEKEKIRTINFDTKKNTVTLSGPFDAAKL 217
           A AE+   L+ E+N+E E+  ++ +++  +L+EKE+ R    D ++   +L    +A   
Sbjct: 491 AKAEEQEKLLEESNMELEERRKRAEQLRRELEEKEQER---LDIEEKYTSLQE--EAQGK 545

Query: 218 TKKLR 232
           TKKL+
Sbjct: 546 TKKLK 550

>ATAD2_HUMAN (Q6PL18) ATPase family AAA domain-containing protein 2|
          Length = 1390

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 82  RMREMLQEDSESSIQTPREGEDQDHQLRHEEE 177
           R  E   ++ E S+++  EGEDQ+H+   E+E
Sbjct: 229 RTDEETTDNQEGSVESSEEGEDQEHEDDGEDE 260

>ISY1_USTMA (Q4PEZ0) Pre-mRNA-splicing factor ISY1|
          Length = 351

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 18/73 (24%), Positives = 33/73 (45%)
 Frame = +1

Query: 1   IKRSLEFASASSSHGREGIHVDHRSQPRMREMLQEDSESSIQTPREGEDQDHQLRHEEEH 180
           +K+S++   AS S       ++H + P         +ES+ +   + E Q    RH+ E 
Sbjct: 236 LKQSVQAVQASLSAAYNQRFMEHAATP---------AESTSKRAPQDELQTPAKRHKNEQ 286

Query: 181 GDPLRPVRRGEAD 219
           G P+ P    +A+
Sbjct: 287 GHPIPPTHHADAE 299

>ATAD2_PONPY (Q5RDX4) ATPase family AAA domain-containing protein 2|
          Length = 1091

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 82  RMREMLQEDSESSIQTPREGEDQDHQLRHEEE 177
           R  E   ++ E S+++  EGEDQ+H+   E+E
Sbjct: 59  RTDEETTDNQEGSVESSEEGEDQEHEDDGEDE 90


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.311    0.127    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,575,521
Number of Sequences: 219361
Number of extensions: 493659
Number of successful extensions: 2190
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 2010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2136
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4085413911
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)