ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart25c12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB031232.1| Toxoplasma gondii mRNA for hypothetical protein,... 52 0.002
2ref|XM_479559.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.007
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
4dbj|AP005099.2| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
5dbj|AK111318.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
6dbj|AK110569.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
7gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 44 0.46
8gb|AE005966.1| Caulobacter crescentus CB15 section 292 of 359 of... 44 0.46
9gb|AE004842.1| Pseudomonas aeruginosa PAO1, section 403 of 529 o... 44 0.46
10dbj|D87064.1| Triticum aestivum gene for histone H1, complete cd... 44 0.46
11ref|XM_472362.1| Oryza sativa (japonica cultivar-group), predic... 42 1.8
12gb|AC155317.5| Mus musculus BAC clone RP23-89D6 from chromosome ... 42 1.8
13emb|AL360181.37| Human DNA sequence from clone RP11-122K13 on ch... 42 1.8
14emb|Y11208.1|NTHISH2B1 N.tabacum mRNA for histone H2B1 42 1.8
15emb|AL606610.3|OSJN00045 Oryza sativa genomic DNA, chromosome 4,... 42 1.8
16gb|AC015813.12| Homo sapiens, clone RP11-159D12, complete sequence 42 1.8
17dbj|AK126318.1| Homo sapiens cDNA FLJ44342 fis, clone TRACH3005294 42 1.8
18dbj|AK095112.1| Homo sapiens cDNA FLJ37793 fis, clone BRHIP3000473 42 1.8
19ref|XM_939541.1| PREDICTED: Homo sapiens hypothetical protein LO... 42 1.8
20ref|XM_928492.1| PREDICTED: Homo sapiens hypothetical protein LO... 42 1.8
21ref|XM_693532.1| PREDICTED: Danio rerio similar to NOD3 protein ... 42 1.8
22dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
23dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 1.8
24dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 42 1.8
25dbj|AK061279.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.8
26emb|AJ718306.1| Nicotiana tabacum cDNA-AFLP-fragment BSTT41-240,... 42 1.8
27gb|AC122387.3| Mus musculus BAC clone RP24-76F22 from 6, complet... 42 1.8
28ref|NM_111807.1| Arabidopsis thaliana unknown protein AT3G09730 ... 40 7.2
29gb|AE010414.1| Methanopyrus kandleri AV19 section 113 of 157 of ... 40 7.2
30ref|XM_635980.1| Dictyostelium discoideum putative CAM kinase (D... 40 7.2
31ref|XM_474267.1| Oryza sativa (japonica cultivar-group), predic... 40 7.2
32gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 7.2
33ref|XM_472813.1| Oryza sativa (japonica cultivar-group), predic... 40 7.2
34ref|XM_472812.1| Oryza sativa (japonica cultivar-group), predic... 40 7.2
35gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 7.2
36gb|AC133248.4| Oryza sativa (japonica cultivar-group) chromosome... 40 7.2
37ref|XM_747531.1| Aspergillus fumigatus Af293 hypothetical protei... 40 7.2
38emb|CR388033.7| Zebrafish DNA sequence from clone CH211-187G4 in... 40 7.2
39gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 7.2
40emb|BX649606.1| Aspergillus fumigatus BAC pilot project supercon... 40 7.2
41emb|AL606588.4|OSJN00023 Oryza sativa genomic DNA, chromosome 4,... 40 7.2
42emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4,... 40 7.2
43emb|CR938479.1| Single read from an extremity of a full-length c... 40 7.2
44dbj|AP007164.1| Aspergillus oryzae RIB40 genomic DNA, SC111 40 7.2
45ref|XM_693786.1| PREDICTED: Danio rerio similar to NOD3 protein ... 40 7.2
46gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome 40 7.2
47dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
48dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
49gb|AC016661.7|AC016661 Arabidopsis thaliana chromosome 3 BAC F11... 40 7.2
50emb|BX825173.1|CNS0A4SD Arabidopsis thaliana Full-length cDNA Co... 40 7.2
51gb|AC010985.8| Homo sapiens BAC clone RP11-521O14 from 2, comple... 40 7.2
52gb|AF297712.1|AF297712 Prunus avium translation elongation facto... 40 7.2
53dbj|AP004733.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
54dbj|AP003541.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
55gb|AE005135.1| Halobacterium sp. NRC-1 section 166 of 170 of the... 40 7.2
56dbj|AK068657.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.2
57dbj|AK062816.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.2
58gb|AY105126.1| Zea mays PCO124988 mRNA sequence 40 7.2
59emb|AL732340.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 7.2
60gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.2 
>dbj|AB031232.1| Toxoplasma gondii mRNA for hypothetical protein, partial cds
          Length = 1794

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 402 agaagaagccggatgagaagaagaagcccgacgagaag 439
           ||||||||||||| |||||||||||||| || ||||||
Sbjct: 613 agaagaagccggaagagaagaagaagccggaagagaag 650



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 401 gagaagaagccggatgagaagaagaagcc 429
           |||||||||||||| ||||||||||||||
Sbjct: 645 gagaagaagccggaagagaagaagaagcc 673



 Score = 44.1 bits (22), Expect = 0.46
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 406 gaagccggatgagaagaagaagcccgacgagaag 439
           ||||||||| |||||||||||||| || ||||||
Sbjct: 599 gaagccggaagagaagaagaagccggaagagaag 632



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 406 gaagccggatgagaagaagaagcc 429
           ||||||||| ||||||||||||||
Sbjct: 683 gaagccggaagagaagaagaagcc 706
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>ref|XM_479559.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 942

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 50/57 (87%), Gaps = 1/57 (1%)
 Strand = Plus / Plus

                                                                    
Query: 474 cgtcgacgacggtgaaccctgcagttcacgcagatgtgcaacctctgctacccgtgg 530
           |||||||||||||||| ||||||||||||  | ||||||  | ||||||||||||||
Sbjct: 495 cgtcgacgacggtgaa-cctgcagttcaccaacatgtgcggcatctgctacccgtgg 550
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 50/57 (87%), Gaps = 1/57 (1%)
 Strand = Plus / Plus

                                                                         
Query: 474      cgtcgacgacggtgaaccctgcagttcacgcagatgtgcaacctctgctacccgtgg 530
                |||||||||||||||| ||||||||||||  | ||||||  | ||||||||||||||
Sbjct: 28866749 cgtcgacgacggtgaa-cctgcagttcaccaacatgtgcggcatctgctacccgtgg 28866804
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>dbj|AP005099.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0008J01
          Length = 159900

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 50/57 (87%), Gaps = 1/57 (1%)
 Strand = Plus / Plus

                                                                       
Query: 474    cgtcgacgacggtgaaccctgcagttcacgcagatgtgcaacctctgctacccgtgg 530
              |||||||||||||||| ||||||||||||  | ||||||  | ||||||||||||||
Sbjct: 124435 cgtcgacgacggtgaa-cctgcagttcaccaacatgtgcggcatctgctacccgtgg 124490
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>dbj|AK111318.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-C11, full
           insert sequence
          Length = 799

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 50/57 (87%), Gaps = 1/57 (1%)
 Strand = Plus / Minus

                                                                    
Query: 474 cgtcgacgacggtgaaccctgcagttcacgcagatgtgcaacctctgctacccgtgg 530
           |||||||||||||||| ||||||||||||  | ||||||  | ||||||||||||||
Sbjct: 408 cgtcgacgacggtgaa-cctgcagttcaccaacatgtgcggcatctgctacccgtgg 353
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>dbj|AK110569.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-D09, full
           insert sequence
          Length = 942

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 50/57 (87%), Gaps = 1/57 (1%)
 Strand = Plus / Plus

                                                                    
Query: 474 cgtcgacgacggtgaaccctgcagttcacgcagatgtgcaacctctgctacccgtgg 530
           |||||||||||||||| ||||||||||||  | ||||||  | ||||||||||||||
Sbjct: 495 cgtcgacgacggtgaa-cctgcagttcaccaacatgtgcggcatctgctacccgtgg 550
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 244    caaggcgatcaaggacatcaag 265
              ||||||||||||||||||||||
Sbjct: 466703 caaggcgatcaaggacatcaag 466724
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>gb|AE005966.1| Caulobacter crescentus CB15 section 292 of 359 of the complete genome
          Length = 11218

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 427  gcccgacgagaagccgaaggcc 448
            ||||||||||||||||||||||
Sbjct: 7603 gcccgacgagaagccgaaggcc 7582
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>gb|AE004842.1| Pseudomonas aeruginosa PAO1, section 403 of 529 of the complete genome
          Length = 13486

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 244   caaggcgatcaaggacatcaag 265
             ||||||||||||||||||||||
Sbjct: 13002 caaggcgatcaaggacatcaag 12981
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>dbj|D87064.1| Triticum aestivum gene for histone H1, complete cds, clone:TH315
          Length = 3025

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 419  aagaagaagcccgacgagaagccgaaggccaagg 452
            ||||||||||||| ||  ||||||||||||||||
Sbjct: 1491 aagaagaagcccgccgccaagccgaaggccaagg 1524
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>ref|XM_472362.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 651

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 224 aagctgcgatgcaaggcctgcaaggcgatcaaggacatcaagatc 268
           |||||| | ||||||||| |||||   ||||||||||||||||||
Sbjct: 171 aagctgtggtgcaaggccggcaagatcatcaaggacatcaagatc 215



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 409 gccggatgagaagaagaagcccga 432
           |||||| |||||||||||||||||
Sbjct: 221 gccggaagagaagaagaagcccga 244
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>gb|AC155317.5| Mus musculus BAC clone RP23-89D6 from chromosome 15, complete sequence
          Length = 251377

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 129   tccaagagaaggagaagatca 149
             |||||||||||||||||||||
Sbjct: 87022 tccaagagaaggagaagatca 87042
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>emb|AL360181.37| Human DNA sequence from clone RP11-122K13 on chromosome 10 Contains the
             5' end of the TUBGCP2 gene for tubulin gamma complex
             associated protein 2, the gene for a novel protein, the
             gene for calcyon D1 dopamine receptor-interacting protein
             (CALCYON), an autointegration factor (BANF1) pseudogene, a
             novel gene, the gene for uterine-specific proline-rich
             acidic protein (UPA), gene FLJ34392, the ECHS1 gene for
             enoyl Coenzyme A hydratase, short chain, 1, mitachondrial,
             the gene for peroxisomal N1-acetyl-spermine/spermidine
             oxidase (PAO), a novel gene, the 5' end of a novel gene
             (LOC92170) and ten CpG islands, complete sequence
          Length = 116311

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 434   gagaagccgaaggccaaggag 454
             |||||||||||||||||||||
Sbjct: 79705 gagaagccgaaggccaaggag 79725
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>emb|Y11208.1|NTHISH2B1 N.tabacum mRNA for histone H2B1
          Length = 772

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 389 aagaaacccgacgagaagaagccgg 413
           |||||||||| ||||||||||||||
Sbjct: 173 aagaaacccgccgagaagaagccgg 197
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>emb|AL606610.3|OSJN00045 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E08,
            complete sequence
          Length = 106975

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 224  aagctgcgatgcaaggcctgcaaggcgatcaaggacatcaagatc 268
            |||||| | ||||||||| |||||   ||||||||||||||||||
Sbjct: 5537 aagctgtggtgcaaggccggcaagatcatcaaggacatcaagatc 5493



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 409  gccggatgagaagaagaagcccga 432
            |||||| |||||||||||||||||
Sbjct: 5487 gccggaagagaagaagaagcccga 5464
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>gb|AC015813.12| Homo sapiens, clone RP11-159D12, complete sequence
          Length = 181494

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 118   tctatccaaactccaagagaa 138
             |||||||||||||||||||||
Sbjct: 60782 tctatccaaactccaagagaa 60802
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>dbj|AK126318.1| Homo sapiens cDNA FLJ44342 fis, clone TRACH3005294
          Length = 4720

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 118  tctatccaaactccaagagaa 138
            |||||||||||||||||||||
Sbjct: 2092 tctatccaaactccaagagaa 2072
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>dbj|AK095112.1| Homo sapiens cDNA FLJ37793 fis, clone BRHIP3000473
          Length = 4055

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 118 tctatccaaactccaagagaa 138
           |||||||||||||||||||||
Sbjct: 721 tctatccaaactccaagagaa 701
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>ref|XM_939541.1| PREDICTED: Homo sapiens hypothetical protein LOC650453 (LOC650453),
            mRNA
          Length = 5474

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 118  tctatccaaactccaagagaa 138
            |||||||||||||||||||||
Sbjct: 1756 tctatccaaactccaagagaa 1736
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>ref|XM_928492.1| PREDICTED: Homo sapiens hypothetical protein LOC645460 (LOC645460),
            mRNA
          Length = 5470

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 118  tctatccaaactccaagagaa 138
            |||||||||||||||||||||
Sbjct: 1756 tctatccaaactccaagagaa 1736
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>ref|XM_693532.1| PREDICTED: Danio rerio similar to NOD3 protein (LOC570097), mRNA
          Length = 2232

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 141  agaagatcaggaccatcaact 161
            |||||||||||||||||||||
Sbjct: 1676 agaagatcaggaccatcaact 1696
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                             
Query: 224      aagctgcgatgcaaggcctgcaaggcgatcaaggacatcaagatc 268
                |||||| | ||||||||| |||||   ||||||||||||||||||
Sbjct: 19850729 aagctgtggtgcaaggccggcaagatcatcaaggacatcaagatc 19850685



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 401      gagaagaagccggatgagaagaag 424
                |||||||||||||| |||||||||
Sbjct: 34115171 gagaagaagccggaagagaagaag 34115194



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 402      agaagaagccggatgagaagaagaagcc 429
                ||||||||||||| ||| ||||||||||
Sbjct: 23403627 agaagaagccggaggaggagaagaagcc 23403600



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 401      gagaagaagccggatgagaagaag 424
                |||||||||||||| |||||||||
Sbjct: 23398166 gagaagaagccggaggagaagaag 23398143



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 401      gagaagaagccggatgagaagaag 424
                |||||||||||||| |||||||||
Sbjct: 23398151 gagaagaagccggaggagaagaag 23398128



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 409      gccggatgagaagaagaagcccga 432
                |||||| |||||||||||||||||
Sbjct: 19850679 gccggaagagaagaagaagcccga 19850656
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 194     ggcccgttcgacgcggcgaagctga 218
               ||||||||||||| |||||||||||
Sbjct: 3141898 ggcccgttcgacgtggcgaagctga 3141874
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 245     aaggcgatcaaggacatcaag 265
               |||||||||||||||||||||
Sbjct: 5350657 aaggcgatcaaggacatcaag 5350677
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>dbj|AK061279.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-F04, full
           insert sequence
          Length = 923

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 224 aagctgcgatgcaaggcctgcaaggcgatcaaggacatcaagatc 268
           |||||| | ||||||||| |||||   ||||||||||||||||||
Sbjct: 325 aagctgtggtgcaaggccggcaagatcatcaaggacatcaagatc 369



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 409 gccggatgagaagaagaagcccga 432
           |||||| |||||||||||||||||
Sbjct: 375 gccggaagagaagaagaagcccga 398
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>emb|AJ718306.1| Nicotiana tabacum cDNA-AFLP-fragment BSTT41-240, cultivar Bright
           Yellow 2
          Length = 196

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 389 aagaaacccgacgagaagaagccgg 413
           |||||||||| ||||||||||||||
Sbjct: 149 aagaaacccgccgagaagaagccgg 125
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>gb|AC122387.3| Mus musculus BAC clone RP24-76F22 from 6, complete sequence
          Length = 191058

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 42    tggcagagaaggtatccacgt 62
             |||||||||||||||||||||
Sbjct: 27953 tggcagagaaggtatccacgt 27973
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>ref|NM_111807.1| Arabidopsis thaliana unknown protein AT3G09730 mRNA, complete cds
          Length = 1218

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 122  tccaaactccaagagaagga 141
            ||||||||||||||||||||
Sbjct: 997  tccaaactccaagagaagga 1016
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>gb|AE010414.1| Methanopyrus kandleri AV19 section 113 of 157 of the complete genome
          Length = 12092

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 198  cgttcgacgcggcgaagctg 217
            ||||||||||||||||||||
Sbjct: 9057 cgttcgacgcggcgaagctg 9076
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>ref|XM_635980.1| Dictyostelium discoideum putative CAM kinase (DDB0206066), partial
            mRNA
          Length = 8253

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 141  agaagatcaggaccatcaac 160
            ||||||||||||||||||||
Sbjct: 3890 agaagatcaggaccatcaac 3871



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 141  agaagatcaggaccatcaac 160
            ||||||||||||||||||||
Sbjct: 3740 agaagatcaggaccatcaac 3721
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>ref|XM_474267.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 414

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 401 gagaagaagccggatgagaagaag 424
           |||||||||||||| |||||||||
Sbjct: 238 gagaagaagccggaagagaagaag 261
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 214     gctgacgaagaagctgcgat 233
               ||||||||||||||||||||
Sbjct: 2286977 gctgacgaagaagctgcgat 2286958
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>ref|XM_472813.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 396

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 402 agaagaagccggatgagaagaagaagcc 429
           ||||||||||||| ||| ||||||||||
Sbjct: 248 agaagaagccggaggaggagaagaagcc 275
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>ref|XM_472812.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 369

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 401 gagaagaagccggatgagaagaag 424
           |||||||||||||| |||||||||
Sbjct: 241 gagaagaagccggaggagaagaag 264



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 401 gagaagaagccggatgagaagaag 424
           |||||||||||||| |||||||||
Sbjct: 226 gagaagaagccggaggagaagaag 249
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 61      gttgatcatcgaagccaacc 80
               ||||||||||||||||||||
Sbjct: 4309495 gttgatcatcgaagccaacc 4309514



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 189     tctccggcccgttcgacgcg 208
               ||||||||||||||||||||
Sbjct: 3730669 tctccggcccgttcgacgcg 3730688
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>gb|AC133248.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0080I08, complete sequence
          Length = 197156

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   attcagaaagttctatccaa 126
             ||||||||||||||||||||
Sbjct: 87448 attcagaaagttctatccaa 87429
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>ref|XM_747531.1| Aspergillus fumigatus Af293 hypothetical protein (Afu1g12540) partial
            mRNA
          Length = 4332

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 423  agaagcccgacgagaagccgaagg 446
            ||||||| ||||||||||||||||
Sbjct: 1844 agaagccggacgagaagccgaagg 1867
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>emb|CR388033.7| Zebrafish DNA sequence from clone CH211-187G4 in linkage group 15,
             complete sequence
          Length = 37045

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   gaagatcaggaccatcaact 161
             ||||||||||||||||||||
Sbjct: 26654 gaagatcaggaccatcaact 26673
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 464    ccggccgcgccgtcgacgac 483
              ||||||||||||||||||||
Sbjct: 161848 ccggccgcgccgtcgacgac 161829
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>emb|BX649606.1| Aspergillus fumigatus BAC pilot project supercontig; segment 2/3
          Length = 348551

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 423  agaagcccgacgagaagccgaagg 446
            ||||||| ||||||||||||||||
Sbjct: 5502 agaagccggacgagaagccgaagg 5479
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>emb|AL606588.4|OSJN00023 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0016O02,
              complete sequence
          Length = 167988

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 402    agaagaagccggatgagaagaagaagcc 429
              ||||||||||||| ||| ||||||||||
Sbjct: 120948 agaagaagccggaggaggagaagaagcc 120921



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 401    gagaagaagccggatgagaagaag 424
              |||||||||||||| |||||||||
Sbjct: 115487 gagaagaagccggaggagaagaag 115464



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 401    gagaagaagccggatgagaagaag 424
              |||||||||||||| |||||||||
Sbjct: 115472 gagaagaagccggaggagaagaag 115449
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>emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043A12,
             complete sequence
          Length = 190432

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 401   gagaagaagccggatgagaagaag 424
             |||||||||||||| |||||||||
Sbjct: 26553 gagaagaagccggaagagaagaag 26576
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>emb|CR938479.1| Single read from an extremity of a full-length cDNA clone made from
           Aedes aegypti total adult females. 5-prime end of clone
           KW0AAA1YL24AAM1 from strain Liverpool of Aedes aegypti
           (yellow fever mosquito)
          Length = 677

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 74  gccaacctcgaatgcgagaa 93
           ||||||||||||||||||||
Sbjct: 175 gccaacctcgaatgcgagaa 194
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>dbj|AP007164.1| Aspergillus oryzae RIB40 genomic DNA, SC111
          Length = 2356219

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 412    ggatgagaagaagaagcccg 431
              ||||||||||||||||||||
Sbjct: 403635 ggatgagaagaagaagcccg 403654
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>ref|XM_693786.1| PREDICTED: Danio rerio similar to NOD3 protein (LOC570316), partial
            mRNA
          Length = 3629

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 142  gaagatcaggaccatcaact 161
            ||||||||||||||||||||
Sbjct: 3165 gaagatcaggaccatcaact 3184
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>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome
          Length = 2839318

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 151     gaccatcaacttcgacacga 170
               ||||||||||||||||||||
Sbjct: 1383786 gaccatcaacttcgacacga 1383805
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 107      attcagaaagttctatccaa 126
                ||||||||||||||||||||
Sbjct: 18821554 attcagaaagttctatccaa 18821535
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 107      attcagaaagttctatccaa 126
                ||||||||||||||||||||
Sbjct: 24977235 attcagaaagttctatccaa 24977216
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>gb|AC016661.7|AC016661 Arabidopsis thaliana chromosome 3 BAC F11F8 genomic sequence, complete
             sequence
          Length = 107603

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   tccaaactccaagagaagga 141
             ||||||||||||||||||||
Sbjct: 84245 tccaaactccaagagaagga 84264
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>emb|BX825173.1|CNS0A4SD Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTSIL18ZD05 of Silique of strain col-0 of Arabidopsis
            thaliana (thale cress)
          Length = 1178

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 122  tccaaactccaagagaagga 141
            ||||||||||||||||||||
Sbjct: 981  tccaaactccaagagaagga 1000
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>gb|AC010985.8| Homo sapiens BAC clone RP11-521O14 from 2, complete sequence
          Length = 196020

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   tcagaaagttctatccaaac 128
             ||||||||||||||||||||
Sbjct: 41883 tcagaaagttctatccaaac 41902
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>gb|AF297712.1|AF297712 Prunus avium translation elongation factor 1-gamma mRNA, complete
           cds
          Length = 1526

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 443 aaggccaaggaggagcccaa 462
           ||||||||||||||||||||
Sbjct: 746 aaggccaaggaggagcccaa 765
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>dbj|AP004733.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0023I22
          Length = 170029

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   attcagaaagttctatccaa 126
             ||||||||||||||||||||
Sbjct: 29568 attcagaaagttctatccaa 29549
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>dbj|AP003541.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0530H05
          Length = 145952

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   attcagaaagttctatccaa 126
             ||||||||||||||||||||
Sbjct: 71790 attcagaaagttctatccaa 71771
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>gb|AE005135.1| Halobacterium sp. NRC-1 section 166 of 170 of the complete genome
          Length = 10922

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 468  ccgcgccgtcgacgacggtg 487
            ||||||||||||||||||||
Sbjct: 4794 ccgcgccgtcgacgacggtg 4813
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>dbj|AK068657.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013163L17, full
           insert sequence
          Length = 765

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 401 gagaagaagccggatgagaagaag 424
           |||||||||||||| |||||||||
Sbjct: 225 gagaagaagccggaagagaagaag 248
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>dbj|AK062816.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-E07, full
           insert sequence
          Length = 703

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 401 gagaagaagccggatgagaagaag 424
           |||||||||||||| |||||||||
Sbjct: 390 gagaagaagccggaggagaagaag 413



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 401 gagaagaagccggatgagaagaag 424
           |||||||||||||| |||||||||
Sbjct: 375 gagaagaagccggaggagaagaag 398
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>gb|AY105126.1| Zea mays PCO124988 mRNA sequence
          Length = 991

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 409 gccggatgagaagaagaagcccga 432
           ||||| ||||||||||||||||||
Sbjct: 80  gccgggtgagaagaagaagcccga 57
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>emb|AL732340.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0811B10, complete
             sequence
          Length = 99356

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 401   gagaagaagccggatgagaagaag 424
             |||||||||||||| |||||||||
Sbjct: 32231 gagaagaagccggaagagaagaag 32254
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 107      attcagaaagttctatccaa 126
                ||||||||||||||||||||
Sbjct: 18982254 attcagaaagttctatccaa 18982235


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,567,029
Number of Sequences: 3902068
Number of extensions: 4567029
Number of successful extensions: 86943
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 86030
Number of HSP's gapped (non-prelim): 915
length of query: 530
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 507
effective length of database: 17,143,297,704
effective search space: 8691651935928
effective search space used: 8691651935928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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