ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart25c10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478523.1| Oryza sativa (japonica cultivar-group), mRNA 80 8e-12
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 80 8e-12
3dbj|AP004674.2| Oryza sativa (japonica cultivar-group) genomic D... 80 8e-12
4dbj|AK099533.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 8e-12
5emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete ... 52 0.002
6gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence 46 0.12
7gb|AC013353.9| Trypanosoma brucei chromosome 6 clone RPCI93-28P1... 46 0.12
8emb|AL157912.5|CNS01RGC Human chromosome 14 DNA sequence BAC C-2... 46 0.12
9gb|BT016535.1| Zea mays clone Contig368 mRNA sequence 44 0.47
10gb|AC115843.10| Mus musculus chromosome 9, clone RP24-239P6, com... 44 0.47
11dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 44 0.47
12gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 42 1.8
13ref|NM_152461.2| Homo sapiens endoplasmic reticulum to nucleus s... 42 1.8
14ref|XM_369188.1| Magnaporthe grisea 70-15 chromosome VI hypothet... 42 1.8
15ref|XM_954942.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.8
16ref|XM_325629.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.8
17gb|AY129337.1| Mycobacteriophage Bxz1, complete genome 42 1.8
18dbj|AK055561.1| Homo sapiens cDNA FLJ30999 fis, clone HLUNG10001... 42 1.8
19gb|AC025362.12| Homo sapiens chromosome 17, clone RP11-89H15, co... 42 1.8
20gb|AF361350.1|AF361350 Mus musculus voltage-dependent calcium ch... 42 1.8
21gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 42 1.8
22gb|AE005022.1| Halobacterium sp. NRC-1 section 53 of 170 of the ... 42 1.8
23ref|NM_133190.1| Mus musculus calcium channel, voltage-dependent... 42 1.8
24ref|XM_463061.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.3
25gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 7.3
26ref|NM_189991.1| Oryza sativa (japonica cultivar-group), predic... 40 7.3
27ref|XM_367513.1| Magnaporthe grisea 70-15 chromosome III hypothe... 40 7.3
28gb|AC132490.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.3
29ref|XM_580309.2| PREDICTED: Bos taurus similar to cytosolic phos... 40 7.3
30gb|AC145905.4| Pan troglodytes BAC clone RP43-9I21 from 7, compl... 40 7.3
31gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.3
32gb|AC133333.5| Oryza sativa chromosome 3 BAC OJ1785_A05 genomic ... 40 7.3
33ref|XM_845173.1| PREDICTED: Canis familiaris similar to T-box 1 ... 40 7.3
34gb|AC087289.9| Homo sapiens chromosome 17, clone RP11-552F3, com... 40 7.3
35gb|AC018664.11| Homo sapiens chromosome 7 clone RP11-109E9, comp... 40 7.3
36gb|AC063947.30| Homo sapiens 12 BAC RP11-350G24 (Roswell Park Ca... 40 7.3
37gb|AE005909.1| Caulobacter crescentus CB15 section 235 of 359 of... 40 7.3
38gb|AC013545.8| Homo sapiens chromosome 8, clone RP11-414D17, com... 40 7.3
39dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
40dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
41dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
42dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
43dbj|AP004332.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
44dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 7.3
45gb|AE005087.1| Halobacterium sp. NRC-1 section 118 of 170 of the... 40 7.3
46dbj|AK101312.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.3
47dbj|AK068802.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.3
48emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 40 7.3
49emb|AL606616.3|OSJN00070 Oryza sativa genomic DNA, chromosome 4,... 40 7.3
50dbj|AB216467.1| Equus caballus DNA, microsatellite TKY2524 40 7.3 
>ref|XM_478523.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1037

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                   
Query: 301 gggttcatcgccctcgacgtcgccgccctctcgtcgctggccggcgacggcccgga 356
           |||||||||||||||||||||  ||||||||| ||||| |||||||||||||||||
Sbjct: 217 gggttcatcgccctcgacgtcagcgccctctcctcgctcgccggcgacggcccgga 272



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 52/56 (92%), Gaps = 3/56 (5%)
 Strand = Plus / Plus

                                                                   
Query: 402 ggtggtgaggtcgctgtcgaggaaggggtcagaaaggaagcaggccgacggcgacg 457
           ||||||||||||||||||||||||||||   |||||||||| ||||||||||||||
Sbjct: 303 ggtggtgaggtcgctgtcgaggaagggg---gaaaggaagccggccgacggcgacg 355
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                        
Query: 301      gggttcatcgccctcgacgtcgccgccctctcgtcgctggccggcgacggcccgga 356
                |||||||||||||||||||||  ||||||||| ||||| |||||||||||||||||
Sbjct: 20718298 gggttcatcgccctcgacgtcagcgccctctcctcgctcgccggcgacggcccgga 20718243



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 52/56 (92%), Gaps = 3/56 (5%)
 Strand = Plus / Minus

                                                                        
Query: 402      ggtggtgaggtcgctgtcgaggaaggggtcagaaaggaagcaggccgacggcgacg 457
                ||||||||||||||||||||||||||||   |||||||||| ||||||||||||||
Sbjct: 20718059 ggtggtgaggtcgctgtcgaggaagggg---gaaaggaagccggccgacggcgacg 20718007



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                                 
Query: 82       tttccctccggttcctcgtttttgtagtattcc 114
                |||||||||||||||||||||| ||||||||||
Sbjct: 20718688 tttccctccggttcctcgttttggtagtattcc 20718656
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>dbj|AP004674.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0681F05
          Length = 144741

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                     
Query: 301   gggttcatcgccctcgacgtcgccgccctctcgtcgctggccggcgacggcccgga 356
             |||||||||||||||||||||  ||||||||| ||||| |||||||||||||||||
Sbjct: 71048 gggttcatcgccctcgacgtcagcgccctctcctcgctcgccggcgacggcccgga 70993



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 52/56 (92%), Gaps = 3/56 (5%)
 Strand = Plus / Minus

                                                                     
Query: 402   ggtggtgaggtcgctgtcgaggaaggggtcagaaaggaagcaggccgacggcgacg 457
             ||||||||||||||||||||||||||||   |||||||||| ||||||||||||||
Sbjct: 70809 ggtggtgaggtcgctgtcgaggaagggg---gaaaggaagccggccgacggcgacg 70757



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                              
Query: 82    tttccctccggttcctcgtttttgtagtattcc 114
             |||||||||||||||||||||| ||||||||||
Sbjct: 71438 tttccctccggttcctcgttttggtagtattcc 71406
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>dbj|AK099533.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031M18, full
           insert sequence
          Length = 1037

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                   
Query: 301 gggttcatcgccctcgacgtcgccgccctctcgtcgctggccggcgacggcccgga 356
           |||||||||||||||||||||  ||||||||| ||||| |||||||||||||||||
Sbjct: 217 gggttcatcgccctcgacgtcagcgccctctcctcgctcgccggcgacggcccgga 272



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 52/56 (92%), Gaps = 3/56 (5%)
 Strand = Plus / Plus

                                                                   
Query: 402 ggtggtgaggtcgctgtcgaggaaggggtcagaaaggaagcaggccgacggcgacg 457
           ||||||||||||||||||||||||||||   |||||||||| ||||||||||||||
Sbjct: 303 ggtggtgaggtcgctgtcgaggaagggg---gaaaggaagccggccgacggcgacg 355
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>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29
          Length = 313800

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                       
Query: 373   ccgccggcctctaccccgaggacgcc 398
             ||||||||||||||||||||||||||
Sbjct: 79257 ccgccggcctctaccccgaggacgcc 79282
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>gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence
          Length = 1618915

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 57     aacaaaaagaacaaagtgacggt 79
              |||||||||||||||||||||||
Sbjct: 531319 aacaaaaagaacaaagtgacggt 531341
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>gb|AC013353.9| Trypanosoma brucei chromosome 6 clone RPCI93-28P18, complete sequence
          Length = 149023

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 57    aacaaaaagaacaaagtgacggt 79
             |||||||||||||||||||||||
Sbjct: 23779 aacaaaaagaacaaagtgacggt 23801
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>emb|AL157912.5|CNS01RGC Human chromosome 14 DNA sequence BAC C-2376I20 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 119906

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 157   cccagatacaacaaaagggaaga 179
             |||||||||||||||||||||||
Sbjct: 78661 cccagatacaacaaaagggaaga 78639
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>gb|BT016535.1| Zea mays clone Contig368 mRNA sequence
          Length = 844

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 308 tcgccctcgacgtcgccgccctctcgtcgctggccggcgacg 349
           |||| |||||||||| ||| || ||||| |||||||||||||
Sbjct: 136 tcgctctcgacgtcggcgcgctgtcgtctctggccggcgacg 177



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                
Query: 392 ggacgcctagggtggtgaggtcgctgtcgaggaaggg 428
           ||||||| | |||| || |||||||||||||||||||
Sbjct: 211 ggacgcccaaggtgatgcggtcgctgtcgaggaaggg 247
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>gb|AC115843.10| Mus musculus chromosome 9, clone RP24-239P6, complete sequence
          Length = 215265

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 425    aggggtcagaaaggaagcaggc 446
              ||||||||||||||||||||||
Sbjct: 128519 aggggtcagaaaggaagcaggc 128540
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 357     aacgaggccggcggcgccgccggcctctac 386
               |||| ||||||||||| |||||||||||||
Sbjct: 2233162 aacggggccggcggcggcgccggcctctac 2233191
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 402    ggtggtgaggtcgctgtcgaggaag 426
              ||||||||| |||||||||||||||
Sbjct: 618435 ggtggtgagttcgctgtcgaggaag 618459
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>ref|NM_152461.2| Homo sapiens endoplasmic reticulum to nucleus signalling 1 (ERN1),
           transcript variant 2, mRNA
          Length = 1365

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 268 agctcggacgccagccacggcgccgcgac 296
           ||||||||| |||||| ||||||||||||
Sbjct: 234 agctcggactccagccccggcgccgcgac 206
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>ref|XM_369188.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
           (MG00056.4) partial mRNA
          Length = 849

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 438 gaagcaggccgacggcgacgccgcc 462
           ||||||||||||| |||||||||||
Sbjct: 246 gaagcaggccgactgcgacgccgcc 270
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>ref|XM_954942.1| Neurospora crassa OR74A hypothetical protein (NCU05775.1) partial
           mRNA
          Length = 1863

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 366 ggcggcgccgccggcctctac 386
           |||||||||||||||||||||
Sbjct: 264 ggcggcgccgccggcctctac 244
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>ref|XM_325629.1| Neurospora crassa OR74A hypothetical protein (NCU05775.1) partial
           mRNA
          Length = 1863

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 366 ggcggcgccgccggcctctac 386
           |||||||||||||||||||||
Sbjct: 264 ggcggcgccgccggcctctac 244
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>gb|AY129337.1| Mycobacteriophage Bxz1, complete genome
          Length = 156102

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 308    tcgccctcgacgtcgccgccc 328
              |||||||||||||||||||||
Sbjct: 103449 tcgccctcgacgtcgccgccc 103469
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>dbj|AK055561.1| Homo sapiens cDNA FLJ30999 fis, clone HLUNG1000110, weakly similar
           to PISTIL-SPECIFIC EXTENSIN-LIKE PROTEIN PRECURSOR
          Length = 2067

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 268 agctcggacgccagccacggcgccgcgac 296
           ||||||||| |||||| ||||||||||||
Sbjct: 937 agctcggactccagccccggcgccgcgac 909
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>gb|AC025362.12| Homo sapiens chromosome 17, clone RP11-89H15, complete sequence
          Length = 154664

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 268   agctcggacgccagccacggcgccgcgac 296
             ||||||||| |||||| ||||||||||||
Sbjct: 88394 agctcggactccagccccggcgccgcgac 88422
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>gb|AF361350.1|AF361350 Mus musculus voltage-dependent calcium channel gamma-8 subunit
           (Cacng8) mRNA, complete cds
          Length = 1380

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 185 cgcgggaggcagctgcgcacacgcc 209
           |||||||||||||| ||||||||||
Sbjct: 556 cgcgggaggcagctacgcacacgcc 532
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 361   aggccggcggcgccgccggcc 381
             |||||||||||||||||||||
Sbjct: 29177 aggccggcggcgccgccggcc 29197



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 362   ggccggcggcgccgccggcct 382
             |||||||||||||||||||||
Sbjct: 29197 ggccggcggcgccgccggcct 29177
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>gb|AE005022.1| Halobacterium sp. NRC-1 section 53 of 170 of the complete genome
          Length = 11515

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 352 ccggaaacgaggccggcggcg 372
           |||||||||||||||||||||
Sbjct: 428 ccggaaacgaggccggcggcg 448
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>ref|NM_133190.1| Mus musculus calcium channel, voltage-dependent, gamma subunit 8
           (Cacng8), mRNA
          Length = 1380

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 185 cgcgggaggcagctgcgcacacgcc 209
           |||||||||||||| ||||||||||
Sbjct: 556 cgcgggaggcagctacgcacacgcc 532
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>ref|XM_463061.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 516

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 306 catcgccctcgacgtcgccgccctctcgtcgc 337
           ||||| ||||||||||| || |||||||||||
Sbjct: 441 catcgacctcgacgtcggcgtcctctcgtcgc 410
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 445     gccgacggcgacgccgccac 464
               ||||||||||||||||||||
Sbjct: 1023128 gccgacggcgacgccgccac 1023147
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>ref|NM_189991.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1176

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 360 gaggccggcggcgccgccggcctc 383
           ||||| ||||||||||||||||||
Sbjct: 192 gaggcgggcggcgccgccggcctc 169



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 360 gaggccggcggcgccgccggcctc 383
           |||||||||||||||||| |||||
Sbjct: 169 gaggccggcggcgccgcccgcctc 192
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>ref|XM_367513.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein
           (MG07424.4) partial mRNA
          Length = 894

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 400 agggtggtgaggtcgctgtc 419
           ||||||||||||||||||||
Sbjct: 746 agggtggtgaggtcgctgtc 765
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>gb|AC132490.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0570A02,
             complete sequence
          Length = 146541

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   cgccacctccagccatcccg 253
             ||||||||||||||||||||
Sbjct: 81125 cgccacctccagccatcccg 81144
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>ref|XM_580309.2| PREDICTED: Bos taurus similar to cytosolic phosphoprotein DP58
           (LOC538433), mRNA
          Length = 1631

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 388 ccgaggacgcctagggtggtgagg 411
           |||||||||||||||| |||||||
Sbjct: 91  ccgaggacgcctaggggggtgagg 68
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>gb|AC145905.4| Pan troglodytes BAC clone RP43-9I21 from 7, complete sequence
          Length = 187893

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 131   ccttcccaagggacaaccat 150
             ||||||||||||||||||||
Sbjct: 20821 ccttcccaagggacaaccat 20802
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 306      catcgccctcgacgtcgccgccctctcgtcgc 337
                ||||| ||||||||||| || |||||||||||
Sbjct: 21275127 catcgacctcgacgtcggcgtcctctcgtcgc 21275158
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>gb|AC133333.5| Oryza sativa chromosome 3 BAC OJ1785_A05 genomic sequence, complete
              sequence
          Length = 174910

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 306    catcgccctcgacgtcgccgccctctcgtcgc 337
              ||||| ||||||||||| || |||||||||||
Sbjct: 131042 catcgacctcgacgtcggcgtcctctcgtcgc 131073
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>ref|XM_845173.1| PREDICTED: Canis familiaris similar to T-box 1 isoform A (LOC608214),
            mRNA
          Length = 1296

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 358  acgaggccggcggcgccgccggcc 381
            ||||||||| ||||||||||||||
Sbjct: 1019 acgaggccgccggcgccgccggcc 996
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>gb|AC087289.9| Homo sapiens chromosome 17, clone RP11-552F3, complete sequence
          Length = 203765

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    aacaaaaagaacaaagtgac 76
             ||||||||||||||||||||
Sbjct: 22284 aacaaaaagaacaaagtgac 22265
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>gb|AC018664.11| Homo sapiens chromosome 7 clone RP11-109E9, complete sequence
          Length = 114848

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 131   ccttcccaagggacaaccat 150
             ||||||||||||||||||||
Sbjct: 59449 ccttcccaagggacaaccat 59430
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>gb|AC063947.30| Homo sapiens 12 BAC RP11-350G24 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 196877

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 422    ggaaggggtcagaaaggaagcagg 445
              |||||||||||||||||| |||||
Sbjct: 133872 ggaaggggtcagaaaggaggcagg 133895
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>gb|AE005909.1| Caulobacter crescentus CB15 section 235 of 359 of the complete genome
          Length = 10294

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 273  ggacgccagccacggcgccg 292
            ||||||||||||||||||||
Sbjct: 5720 ggacgccagccacggcgccg 5701
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>gb|AC013545.8| Homo sapiens chromosome 8, clone RP11-414D17, complete sequence
          Length = 200208

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 116   ccattaaattctccgccttcccaaggga 143
             |||||||||||||| || ||||||||||
Sbjct: 77000 ccattaaattctcccccatcccaaggga 77027
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4,
              complete sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 476    gaggcggngtggggacgggcgagcggc 502
              ||||||| | |||||||||||||||||
Sbjct: 670534 gaggcggtgaggggacgggcgagcggc 670560
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 234      cgccacctccagccatcccg 253
                ||||||||||||||||||||
Sbjct: 14001048 cgccacctccagccatcccg 14001067
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 306      catcgccctcgacgtcgccgccctctcgtcgc 337
                ||||| ||||||||||| || |||||||||||
Sbjct: 21268156 catcgacctcgacgtcggcgtcctctcgtcgc 21268187
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 360      gaggccggcggcgccgccggcctc 383
                ||||| ||||||||||||||||||
Sbjct: 40672824 gaggcgggcggcgccgccggcctc 40672801



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 360      gaggccggcggcgccgccggcctc 383
                |||||||||||||||||| |||||
Sbjct: 40672801 gaggccggcggcgccgcccgcctc 40672824
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>dbj|AP004332.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0093F16
          Length = 160925

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 360    gaggccggcggcgccgccggcctc 383
              |||||||||||||||||| |||||
Sbjct: 114779 gaggccggcggcgccgcccgcctc 114802



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 360    gaggccggcggcgccgccggcctc 383
              ||||| ||||||||||||||||||
Sbjct: 114802 gaggcgggcggcgccgccggcctc 114779
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 306     catcgccctcgacgtcgccg 325
               ||||||||||||||||||||
Sbjct: 7355772 catcgccctcgacgtcgccg 7355791
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>gb|AE005087.1| Halobacterium sp. NRC-1 section 118 of 170 of the complete genome
          Length = 10924

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 359  cgaggccggcggcgccgccggcct 382
            |||||||||||||| |||||||||
Sbjct: 9207 cgaggccggcggcgacgccggcct 9184
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>dbj|AK101312.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033P12, full
           insert sequence
          Length = 2783

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 360 gaggccggcggcgccgccggcctc 383
           ||||| ||||||||||||||||||
Sbjct: 805 gaggcgggcggcgccgccggcctc 782



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 360 gaggccggcggcgccgccggcctc 383
           |||||||||||||||||| |||||
Sbjct: 782 gaggccggcggcgccgcccgcctc 805
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>dbj|AK068802.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159J12, full
           insert sequence
          Length = 2144

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 360 gaggccggcggcgccgccggcctc 383
           ||||| ||||||||||||||||||
Sbjct: 736 gaggcgggcggcgccgccggcctc 713



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 360 gaggccggcggcgccgccggcctc 383
           |||||||||||||||||| |||||
Sbjct: 713 gaggccggcggcgccgcccgcctc 736
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 408     gaggtcgctgtcgaggaagg 427
               ||||||||||||||||||||
Sbjct: 1821916 gaggtcgctgtcgaggaagg 1821897
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>emb|AL606616.3|OSJN00070 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0060M15,
             complete sequence
          Length = 119918

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 476   gaggcggngtggggacgggcgagcggc 502
             ||||||| | |||||||||||||||||
Sbjct: 61406 gaggcggtgaggggacgggcgagcggc 61432
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>dbj|AB216467.1| Equus caballus DNA, microsatellite TKY2524
          Length = 463

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 223 ggcatgggggacgccacctc 242
           ||||||||||||||||||||
Sbjct: 403 ggcatgggggacgccacctc 422


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,178,205
Number of Sequences: 3902068
Number of extensions: 4178205
Number of successful extensions: 104698
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103496
Number of HSP's gapped (non-prelim): 1198
length of query: 537
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 514
effective length of database: 17,143,297,704
effective search space: 8811655019856
effective search space used: 8811655019856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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