ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart25c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NOSZ_BRUSU (Q8FX16) Nitrous-oxide reductase precursor (EC 1.7.99... 30 5.9
2CYB_PARDE (P05418) Cytochrome b 30 5.9
3YTM1_YEAST (Q12024) Microtubule-associated protein YTM1 29 7.7
4ENAH_MOUSE (Q03173) Protein enabled homolog (NPC-derived proline... 29 10.0

>NOSZ_BRUSU (Q8FX16) Nitrous-oxide reductase precursor (EC 1.7.99.6) (N(2)OR)|
           (N2O reductase)
          Length = 639

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 37/147 (25%), Positives = 56/147 (38%), Gaps = 1/147 (0%)
 Frame = +2

Query: 80  ERMATSMRWIALFLLVDVCALAVSAVIDDGLLPNGDFRNGPDKSQMNG-PVVTGKHAIPN 256
           E M++   WI +F L  +          +  + NGDF+      +MNG PV+ G+H    
Sbjct: 272 EMMSSEQDWIVVFNLKRI----------EEAVANGDFK------EMNGVPVIDGRHG--- 312

Query: 257 WELSGFVEYIESGHTQEDMILPVPVGANAVRLGNDATIRQQL*VSRHTYYSISFIAARSC 436
              S +  YI   ++    I   P G + V  G  +       V +        I  R  
Sbjct: 313 ---SKYTRYIPVPNSPHG-INTAPDGIHVVANGKLSPTVTVFDVRKFDDLFDDKIKPRDA 368

Query: 437 AQAEKLNVSVDPEFGVLPIQTVYTNTG 517
             AE       PE G+ P+ T Y + G
Sbjct: 369 VVAE-------PELGLGPLHTAYDDKG 388



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>CYB_PARDE (P05418) Cytochrome b|
          Length = 440

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +2

Query: 116 FLLVDVCALAVSAVIDD---GLLPNGDFRNGPDKSQMNGPVVTGKHAIPNW 259
           F++ D+ ALAV  V+     G +PN  +   PD      P+VT  H +P W
Sbjct: 248 FVIKDLFALAVVLVVFFAIVGFMPN--YLGHPDNYIEANPLVTPAHIVPEW 296



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>YTM1_YEAST (Q12024) Microtubule-associated protein YTM1|
          Length = 460

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +2

Query: 179 NGDFRNGPDKSQMNGPVVTGKH--AIPNWELSGFVEYIESGHTQEDMILPVPVGANAVRL 352
           N D+ +  D    +  +++G +   +  W+LSG V+   SGH+     +        V  
Sbjct: 102 NEDWVSSLDVGDGSKHIISGSYDGIVRTWDLSGNVQKQYSGHSGPIRAVKYISNTRLVSA 161

Query: 353 GNDATIR 373
           GND T+R
Sbjct: 162 GNDRTLR 168



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>ENAH_MOUSE (Q03173) Protein enabled homolog (NPC-derived proline-rich protein|
           1) (NDPP-1)
          Length = 802

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
 Frame = -2

Query: 360 SLPSRTAFAPTGTGRIMSSCVWPDSMYSTNPESSQFGIACFP-VTTGPFI*DLSGPFLKS 184
           S PS     P+       SC WP S +S  P S    I+  P   TGP    +    + S
Sbjct: 351 SRPSSPVNTPSSQPPAAKSCAWPTSNFSPLPPSPPIMISSPPGKATGPR--PVLPVCVSS 408

Query: 183 PLGNRPSSMTA 151
           P+   P S TA
Sbjct: 409 PVPQMPPSPTA 419


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,101,447
Number of Sequences: 219361
Number of extensions: 1562812
Number of successful extensions: 4755
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4749
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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