ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart25c04 |
|---|---|
| Clone Library Name | barley_pub |
>GGPPS_HEVBR (Q94ID7) Geranylgeranyl pyrophosphate synthetase, chloroplast| precursor (GGPP synthetase) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] Length = 370 Score = 78.2 bits (191), Expect = 1e-14 Identities = 37/55 (67%), Positives = 47/55 (85%) Frame = +3 Query: 309 FDFKAYMGERAVAVNGALDAAVPAGEPPATLHEAMRYALLAGGKRVRPALCLAAC 473 FDFK+YM ++ ++N AL+AA+P EP A +HE+MRY+LLAGGKRVRPALCLAAC Sbjct: 77 FDFKSYMLQKGNSINQALEAAIPLQEP-AKIHESMRYSLLAGGKRVRPALCLAAC 130
>GGPPS_CAPAN (P80042) Geranylgeranyl pyrophosphate synthetase, chloroplast| precursor (GGPP synthetase) (GGPS) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] Length = 369 Score = 73.6 bits (179), Expect = 3e-13 Identities = 36/55 (65%), Positives = 44/55 (80%) Frame = +3 Query: 309 FDFKAYMGERAVAVNGALDAAVPAGEPPATLHEAMRYALLAGGKRVRPALCLAAC 473 F+FK Y+ E+A++VN ALD A+ EP +HEAMRY+LLAGGKRVRP LCLAAC Sbjct: 76 FNFKIYVTEKAISVNKALDEAIIVKEPHV-IHEAMRYSLLAGGKRVRPMLCLAAC 129
>GGPPS_SINAL (Q43133) Geranylgeranyl pyrophosphate synthetase, chloroplast| precursor (GGPP synthetase) (GGPS) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] Length = 366 Score = 73.6 bits (179), Expect = 3e-13 Identities = 36/57 (63%), Positives = 45/57 (78%) Frame = +3 Query: 303 TEFDFKAYMGERAVAVNGALDAAVPAGEPPATLHEAMRYALLAGGKRVRPALCLAAC 473 + FDF +Y+ +A +VN ALD+AVP EP +HEAMRY+LLAGGKRVRP LC+AAC Sbjct: 68 SSFDFMSYIIRKADSVNKALDSAVPLREP-LKIHEAMRYSLLAGGKRVRPVLCIAAC 123
>GGPP4_ARATH (Q9SLG2) Geranylgeranyl pyrophosphate synthetase 4 precursor (GGPP| synthetase 4) (GGPS4) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] Length = 372 Score = 73.6 bits (179), Expect = 3e-13 Identities = 36/55 (65%), Positives = 42/55 (76%) Frame = +3 Query: 309 FDFKAYMGERAVAVNGALDAAVPAGEPPATLHEAMRYALLAGGKRVRPALCLAAC 473 FDFK YM +A +N ALD A+P EP +H+AMRYA+LAGGKRVRP LCLAAC Sbjct: 79 FDFKPYMISKAETINRALDEAIPLIEP-LNIHKAMRYAILAGGKRVRPILCLAAC 132
>GGPP2_ARATH (O04046) Geranylgeranyl pyrophosphate synthetase 2 precursor (GGPP| synthetase 2) (GGPS2) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] Length = 376 Score = 73.2 bits (178), Expect = 3e-13 Identities = 43/113 (38%), Positives = 55/113 (48%) Frame = +3 Query: 135 PRAMAAFHPLVASRVRXXXXXXXXXXXXXXXXXXXGPSFHQRRFSXXXXXXXXXXXTEFD 314 PR + F P + SRV+ +R T F+ Sbjct: 26 PRLVRLFQPSLESRVKTALLSRKEVAAFLDSPIVEDEEGEEREEEEEGGIVSNANFT-FE 84 Query: 315 FKAYMGERAVAVNGALDAAVPAGEPPATLHEAMRYALLAGGKRVRPALCLAAC 473 F YM +A +VN AL+ A+P GEP +HEAMRYA+LA GKRVRP LCLA+C Sbjct: 85 FDPYMMSKAESVNKALEEAIPVGEP-LKIHEAMRYAILAAGKRVRPILCLASC 136
>GGPP1_ARATH (P34802) Geranylgeranyl pyrophosphate synthetase 1, chloroplast| precursor (GGPP synthetase 1) (GGPS1) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] Length = 371 Score = 72.8 bits (177), Expect = 5e-13 Identities = 36/57 (63%), Positives = 44/57 (77%) Frame = +3 Query: 303 TEFDFKAYMGERAVAVNGALDAAVPAGEPPATLHEAMRYALLAGGKRVRPALCLAAC 473 + FDF +Y+ +A VN ALD+AVP EP +HEAMRY+LLAGGKRVRP LC+AAC Sbjct: 72 SSFDFMSYIITKAELVNKALDSAVPLREP-LKIHEAMRYSLLAGGKRVRPVLCIAAC 127
>GGPP3_ARATH (Q9LUD9) Geranylgeranyl pyrophosphate synthetase 3, chloroplast| precursor (GGPP synthetase 3) (GGPS3) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] Length = 360 Score = 71.2 bits (173), Expect = 1e-12 Identities = 35/55 (63%), Positives = 42/55 (76%) Frame = +3 Query: 309 FDFKAYMGERAVAVNGALDAAVPAGEPPATLHEAMRYALLAGGKRVRPALCLAAC 473 FDFK YM +A +VN ALD +VP EP T+ EA+RY+LLAGGKRVRP LC+A C Sbjct: 64 FDFKLYMIRKAESVNAALDVSVPLREP-LTVQEAVRYSLLAGGKRVRPLLCIAVC 117
>GGPPS_CATRO (Q42698) Geranylgeranyl pyrophosphate synthetase, chloroplast| precursor (GGPP synthetase) (GGPS) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] Length = 357 Score = 70.1 bits (170), Expect = 3e-12 Identities = 36/57 (63%), Positives = 44/57 (77%) Frame = +3 Query: 303 TEFDFKAYMGERAVAVNGALDAAVPAGEPPATLHEAMRYALLAGGKRVRPALCLAAC 473 + FDFKAYM +A +VN AL+ AV EP +HE+MRY+LLAGGKRVRP LC+AAC Sbjct: 62 SSFDFKAYMIGKANSVNKALEDAVLVREP-LKIHESMRYSLLAGGKRVRPMLCIAAC 117
>GGPP6_ARATH (O22043) Geranylgeranyl pyrophosphate synthetase 6, mitochondrial| precursor (GGPP synthetase 6) (GGPS6) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] Length = 336 Score = 60.5 bits (145), Expect = 2e-09 Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 7/64 (10%) Frame = +3 Query: 303 TEFDFKAYMGERAVAVNGALDAA-------VPAGEPPATLHEAMRYALLAGGKRVRPALC 461 ++ +F +YM +A ++N ALD + VP EP +H+AMRY LL GGKRVRP LC Sbjct: 28 SDSEFISYMKNKAKSINKALDNSIPLCNNFVPLWEPVLEVHKAMRYTLLPGGKRVRPMLC 87 Query: 462 LAAC 473 L AC Sbjct: 88 LVAC 91
>CRTE_CYAPA (P48368) Geranylgeranyl pyrophosphate synthetase homolog (EC| 2.5.1.29) (GGPP synthetase) (Farnesyltranstransferase) Length = 300 Score = 55.5 bits (132), Expect = 7e-08 Identities = 25/57 (43%), Positives = 38/57 (66%) Frame = +3 Query: 303 TEFDFKAYMGERAVAVNGALDAAVPAGEPPATLHEAMRYALLAGGKRVRPALCLAAC 473 T F+ Y+ ER V L+ ++P G P +++++RY+L AGGKR+RP LCLA+C Sbjct: 6 TNFNLLTYLYERKEIVEDTLNKSIPRGNP-TFIYDSIRYSLSAGGKRIRPILCLASC 61
>GGR_ARATH (Q39108) Geranylgeranyl pyrophosphate synthase-related protein,| chloroplast precursor Length = 326 Score = 49.3 bits (116), Expect = 5e-06 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%) Frame = +3 Query: 309 FDFKAYMGERAVAVNGALDAAVPAGEPPATLHEAMRYALLA-GGKRVRPALCLAAC 473 FD + Y +N LD A+P + PA ++EAMRY++LA G KR P +C+AAC Sbjct: 45 FDLRTYWTTLITEINQKLDEAIPV-KHPAGIYEAMRYSVLAQGAKRAPPVMCVAAC 99
>ISPA_BACST (Q08291) Geranyltranstransferase (EC 2.5.1.10)| (Farnesyl-diphosphate synthase) (FPP synthase) Length = 297 Score = 42.7 bits (99), Expect = 5e-04 Identities = 22/54 (40%), Positives = 32/54 (59%) Frame = +3 Query: 306 EFDFKAYMGERAVAVNGALDAAVPAGEPPATLHEAMRYALLAGGKRVRPALCLA 467 + + ++ E+ AV AL + E PA L +AM Y+L AGGKR+RP L L+ Sbjct: 3 QLSVEQFLNEQKQAVETALSRYIERLEGPAKLKKAMAYSLEAGGKRIRPLLLLS 56
>ISPA_HAEIN (P45204) Geranyltranstransferase (EC 2.5.1.10)| (Farnesyl-diphosphate synthase) (FPP synthase) Length = 295 Score = 35.4 bits (80), Expect = 0.080 Identities = 18/25 (72%), Positives = 19/25 (76%) Frame = +3 Query: 393 ATLHEAMRYALLAGGKRVRPALCLA 467 A L EAM+YALL GGKRVRP L A Sbjct: 31 APLLEAMKYALLLGGKRVRPFLVYA 55
>ISPA_BRAJA (Q45220) Probable geranyltranstransferase (EC 2.5.1.10)| (Farnesyl-diphosphate synthase) (FPP synthase) Length = 332 Score = 35.4 bits (80), Expect = 0.080 Identities = 24/50 (48%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Frame = +3 Query: 324 YMGERAVAVNGALDAAVPAGEPPAT-LHEAMRYALLAGGKRVRPALCLAA 470 +M + A V AL + A + T L AMRYA L GGKR R LCLAA Sbjct: 36 WMQDGAKRVEEALARLLCAEDDGETELMAAMRYATLHGGKRTRALLCLAA 85
>ISPA_MICLU (O66126) Geranyltranstransferase (EC 2.5.1.10)| (Farnesyl-diphosphate synthase) (FPP synthase) Length = 291 Score = 35.0 bits (79), Expect = 0.10 Identities = 15/22 (68%), Positives = 18/22 (81%) Frame = +3 Query: 399 LHEAMRYALLAGGKRVRPALCL 464 LHEA+ Y+L AGGKR+RP L L Sbjct: 31 LHEAINYSLSAGGKRIRPLLVL 52
>ISPA_BACSU (P54383) Geranyltranstransferase (EC 2.5.1.10)| (Farnesyl-diphosphate synthase) (FPP synthase) Length = 272 Score = 35.0 bits (79), Expect = 0.10 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = +3 Query: 321 AYMGERAVAVNGALDAAVPAGEPPATLHEAMRYALLAGGKRVRPALCLA 467 +++ +R + L + P +L ++M Y+L AGGKR+RP + LA Sbjct: 7 SFLADRKKTIENQLSVYTEKLDMPDSLKKSMLYSLQAGGKRLRPLIVLA 55
>ISPA_RHISN (P55539) Probable geranyltranstransferase (EC 2.5.1.10)| (Farnesyl-diphosphate synthase) (FPP synthase) Length = 332 Score = 34.3 bits (77), Expect = 0.18 Identities = 17/24 (70%), Positives = 17/24 (70%) Frame = +3 Query: 399 LHEAMRYALLAGGKRVRPALCLAA 470 L AMRYA L GGKR R LCLAA Sbjct: 62 LMAAMRYATLHGGKRTRALLCLAA 85
>IDSA_METTM (Q53479) Bifunctional short chain isoprenyl diphosphate synthase| [Includes: Farnesyl pyrophosphate synthetase (EC 2.5.1.1) (FPP synthetase) (Dimethylallyltranstransferase); Geranyltranstransferase (EC 2.5.1.10)] Length = 324 Score = 32.7 bits (73), Expect = 0.52 Identities = 13/28 (46%), Positives = 20/28 (71%) Frame = +3 Query: 390 PATLHEAMRYALLAGGKRVRPALCLAAC 473 P TL +A + + AGGK++RP+L L +C Sbjct: 27 PDTLLKASEHLITAGGKKIRPSLALLSC 54
>CRTE_RHOS4 (P54976) Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29)| (GGPP synthetase) (Farnesyltranstransferase) Length = 288 Score = 32.7 bits (73), Expect = 0.52 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%) Frame = +3 Query: 348 VNGALDAAVPAG---EPPATLHEAMRYALLAGGKRVRPALCLA 467 + A+ AA+ G E P+ L A+ YA+ GG R+RP L L+ Sbjct: 7 IEAAMAAAIARGQGSEAPSKLATALDYAVTPGGARIRPTLLLS 49
>AMO_SCHPO (O42890) Putative copper amine oxidase (EC 1.4.3.6)| Length = 794 Score = 31.6 bits (70), Expect = 1.2 Identities = 17/45 (37%), Positives = 25/45 (55%) Frame = -2 Query: 476 DAGGQAEGRAHALAAGQQRVAHRFVERRGGLAGRDGGVQGAVHGH 342 DA + EGR+ LA Q+ A++ E++GG G +GG H H Sbjct: 705 DAAQKHEGRSETLAQPGQQNANQSEEKQGGQNGSNGGHHHHHHHH 749
>HEPS2_BACST (P55785) Heptaprenyl diphosphate synthase component II (EC| 2.5.1.30) (HEPPP synthase subunit 2) Length = 320 Score = 31.2 bits (69), Expect = 1.5 Identities = 19/50 (38%), Positives = 27/50 (54%) Frame = +3 Query: 321 AYMGERAVAVNGALDAAVPAGEPPATLHEAMRYALLAGGKRVRPALCLAA 470 +++ + AV L+ AV + P L EA + L AGGKR+RP L A Sbjct: 8 SFLSDDLAAVEEELERAVQSEYGP--LGEAALHLLQAGGKRIRPVFVLLA 55
>G6PI_LISMO (Q8Y4R7) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 450 Score = 30.4 bits (67), Expect = 2.6 Identities = 14/40 (35%), Positives = 23/40 (57%) Frame = +3 Query: 309 FDFKAYMGERAVAVNGALDAAVPAGEPPATLHEAMRYALL 428 F + Y E+AVA++G L+ P +P ++A +ALL Sbjct: 393 FGYLVYFFEKAVAISGYLNGVNPFDQPGVEAYKANMFALL 432
>G6PI_LISMF (Q71X61) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 450 Score = 30.4 bits (67), Expect = 2.6 Identities = 14/40 (35%), Positives = 23/40 (57%) Frame = +3 Query: 309 FDFKAYMGERAVAVNGALDAAVPAGEPPATLHEAMRYALL 428 F + Y E+AVA++G L+ P +P ++A +ALL Sbjct: 393 FGYLVYFFEKAVAISGYLNGVNPFDQPGVEAYKANMFALL 432
>G6PI_LISIN (Q928R6) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 450 Score = 30.4 bits (67), Expect = 2.6 Identities = 14/40 (35%), Positives = 23/40 (57%) Frame = +3 Query: 309 FDFKAYMGERAVAVNGALDAAVPAGEPPATLHEAMRYALL 428 F + Y E+AVA++G L+ P +P ++A +ALL Sbjct: 393 FGYLVYFFEKAVAISGYLNGVNPFDQPGVEAYKANMFALL 432
>IDSA_METTH (O26156) Bifunctional short chain isoprenyl diphosphate synthase| [Includes: Farnesyl pyrophosphate synthetase (EC 2.5.1.1) (FPP synthetase) (Dimethylallyltranstransferase); Geranyltranstransferase (EC 2.5.1.10)] Length = 325 Score = 29.3 bits (64), Expect = 5.7 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +3 Query: 390 PATLHEAMRYALLAGGKRVRPALCL 464 P TL A + + AGGK++RP+L L Sbjct: 28 PETLLRASEHLITAGGKKIRPSLAL 52
>CARX_BACST (P54324) Carbamoyl-phosphate synthase arginine-specific small chain| (EC 6.3.5.5) (Carbamoyl-phosphate synthetase glutamine chain) Length = 354 Score = 28.9 bits (63), Expect = 7.5 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 10/37 (27%) Frame = -2 Query: 413 HRFVERRGGLAGR----------DGGVQGAVHGHRPL 333 H +V + G L G+ DG V+G VH H+P+ Sbjct: 283 HSYVVKEGSLVGKPFDIRFINVNDGSVEGIVHRHKPI 319
>ISPA_AQUAE (O66952) Geranyltranstransferase (EC 2.5.1.10)| (Farnesyl-diphosphate synthase) (FPP synthase) Length = 262 Score = 28.5 bits (62), Expect = 9.7 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = +3 Query: 384 EPPATLHEAMRYALLAGGKRVRPALCLA 467 E P L EAM+Y L GKR+RP +A Sbjct: 22 EGPEELIEAMKYYPLQKGKRIRPLFTVA 49
>GUX1_TRIVI (P19355) Exoglucanase 1 precursor (EC 3.2.1.91) (Exoglucanase I)| (Exocellobiohydrolase) (1,4-beta-cellobiohydrolase) Length = 514 Score = 28.5 bits (62), Expect = 9.7 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = -3 Query: 433 PASSA*RIASWSVAGGSPAGTAASRAPFTATARSP 329 P S + + GG+P GT +R P T+T SP Sbjct: 442 PIGSTGNSSGGNPPGGNPPGTTTTRRPATSTGSSP 476
>PP1RA_RAT (O55000) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (Phosphatase 1 nuclear targeting subunit) (PNUTS protein) (MHC class I region proline-rich protein CAT53) Length = 872 Score = 28.5 bits (62), Expect = 9.7 Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 8/57 (14%) Frame = -2 Query: 482 GHDAGGQAEG---RAHALAAGQQRVAHRFVERRGGLAG-----RDGGVQGAVHGHRP 336 G GG G R H G HR E GG G +G G HGHRP Sbjct: 739 GPGGGGMVGGGGHRPHEGPGGSMGSGHRSHEGPGGSMGSGHRSHEGPGHGGPHGHRP 795
>NT56_DROVI (Q24332) Lethal(2)neighbour of Tid protein (NOT58)| Length = 526 Score = 28.5 bits (62), Expect = 9.7 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 7/65 (10%) Frame = +3 Query: 303 TEFDFKAYMGERAVAVNGALDAAVPAGEPPATLHEAM-------RYALLAGGKRVRPALC 461 TE D+KAYM E +NG + ++ G+ ++ A Y L G VR A Sbjct: 69 TEIDWKAYMQECEGFLNGTTNYSLLRGDTGPLVYPAAFVYIYSGLYYLTGQGTNVRLAQY 128 Query: 462 LAACV 476 + AC+ Sbjct: 129 IFACI 133 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,103,161 Number of Sequences: 219361 Number of extensions: 713486 Number of successful extensions: 2994 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 2841 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2983 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
