ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart25c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NOIL_ELAOL (Q8S3M3) NOI-like protein 65 1e-10
2RIN4_ARATH (Q8GYN5) RPM1-interacting protein 4 63 5e-10
3IF2_XANAC (Q8PJ55) Translation initiation factor IF-2 30 5.6
4VATB_PICTO (Q6L1S8) V-type ATP synthase beta chain (EC 3.6.3.14)... 29 7.3
5IF2_XANCP (Q8P7U7) Translation initiation factor IF-2 29 9.5
6IF2_XANC8 (Q4UWA2) Translation initiation factor IF-2 29 9.5

>NOIL_ELAOL (Q8S3M3) NOI-like protein|
          Length = 228

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 32/59 (54%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
 Frame = +1

Query: 232 AHVPKFGNWDNDGNVPYTLYFDNAR--KGKGGKPMNPNDPVENPEAFSSSVVAPSPNRS 402
           AHVPKFGNWD + N+ YT YF+     KG G K  NPNDP ENP+AF    VA     S
Sbjct: 5   AHVPKFGNWDGE-NISYTTYFETVHRDKGDGSKIFNPNDPEENPQAFYPRTVAQDHQHS 62



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>RIN4_ARATH (Q8GYN5) RPM1-interacting protein 4|
          Length = 211

 Score = 63.2 bits (152), Expect = 5e-10
 Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
 Frame = +1

Query: 232 AHVPKFGNWDNDGNVPYTLYFDNARKGK--GGKPMNPNDPVENPEAFSSSVVAPSPNRS 402
           ++VPKFGNW+ + NVPYT YFD ARK +  G K MNPNDP  N ++ S +   P  +R+
Sbjct: 4   SNVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYNSDSQSQAPPHPPSSRT 62



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>IF2_XANAC (Q8PJ55) Translation initiation factor IF-2|
          Length = 904

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +3

Query: 18  LPYRPSGARRKKQPAHISPSSRPA 89
           LP  PS A R  +PA  SP+SRPA
Sbjct: 204 LPSSPSSAPRAARPAGASPASRPA 227



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>VATB_PICTO (Q6L1S8) V-type ATP synthase beta chain (EC 3.6.3.14) (V-type|
           ATPase subunit B)
          Length = 460

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +1

Query: 217 KQQKNAHVPKFGNWDN 264
           K+ K+AH+PK+G W+N
Sbjct: 443 KKVKSAHIPKYGKWNN 458



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>IF2_XANCP (Q8P7U7) Translation initiation factor IF-2|
          Length = 916

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 21  PYRPSGARRKKQPAHISPSSRPAELLEP 104
           P  PS A R  +PA  SP+SRPA    P
Sbjct: 218 PSSPSSAPRPARPAGASPASRPATPARP 245



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>IF2_XANC8 (Q4UWA2) Translation initiation factor IF-2|
          Length = 902

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 21  PYRPSGARRKKQPAHISPSSRPAELLEP 104
           P  PS A R  +PA  SP+SRPA    P
Sbjct: 204 PSSPSSAPRPARPAGASPASRPATPARP 231


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.313    0.135    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,838,672
Number of Sequences: 219361
Number of extensions: 879424
Number of successful extensions: 2355
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2352
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4200495993
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
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