Clone Name | bart25c02 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | NOIL_ELAOL (Q8S3M3) NOI-like protein | 65 | 1e-10 | 2 | RIN4_ARATH (Q8GYN5) RPM1-interacting protein 4 | 63 | 5e-10 | 3 | IF2_XANAC (Q8PJ55) Translation initiation factor IF-2 | 30 | 5.6 | 4 | VATB_PICTO (Q6L1S8) V-type ATP synthase beta chain (EC 3.6.3.14)... | 29 | 7.3 | 5 | IF2_XANCP (Q8P7U7) Translation initiation factor IF-2 | 29 | 9.5 | 6 | IF2_XANC8 (Q4UWA2) Translation initiation factor IF-2 | 29 | 9.5 |
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>NOIL_ELAOL (Q8S3M3) NOI-like protein| Length = 228 Score = 65.1 bits (157), Expect = 1e-10 Identities = 32/59 (54%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Frame = +1 Query: 232 AHVPKFGNWDNDGNVPYTLYFDNAR--KGKGGKPMNPNDPVENPEAFSSSVVAPSPNRS 402 AHVPKFGNWD + N+ YT YF+ KG G K NPNDP ENP+AF VA S Sbjct: 5 AHVPKFGNWDGE-NISYTTYFETVHRDKGDGSKIFNPNDPEENPQAFYPRTVAQDHQHS 62
>RIN4_ARATH (Q8GYN5) RPM1-interacting protein 4| Length = 211 Score = 63.2 bits (152), Expect = 5e-10 Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 2/59 (3%) Frame = +1 Query: 232 AHVPKFGNWDNDGNVPYTLYFDNARKGK--GGKPMNPNDPVENPEAFSSSVVAPSPNRS 402 ++VPKFGNW+ + NVPYT YFD ARK + G K MNPNDP N ++ S + P +R+ Sbjct: 4 SNVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYNSDSQSQAPPHPPSSRT 62
>IF2_XANAC (Q8PJ55) Translation initiation factor IF-2| Length = 904 Score = 29.6 bits (65), Expect = 5.6 Identities = 14/24 (58%), Positives = 16/24 (66%) Frame = +3 Query: 18 LPYRPSGARRKKQPAHISPSSRPA 89 LP PS A R +PA SP+SRPA Sbjct: 204 LPSSPSSAPRAARPAGASPASRPA 227
>VATB_PICTO (Q6L1S8) V-type ATP synthase beta chain (EC 3.6.3.14) (V-type| ATPase subunit B) Length = 460 Score = 29.3 bits (64), Expect = 7.3 Identities = 9/16 (56%), Positives = 14/16 (87%) Frame = +1 Query: 217 KQQKNAHVPKFGNWDN 264 K+ K+AH+PK+G W+N Sbjct: 443 KKVKSAHIPKYGKWNN 458
>IF2_XANCP (Q8P7U7) Translation initiation factor IF-2| Length = 916 Score = 28.9 bits (63), Expect = 9.5 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = +3 Query: 21 PYRPSGARRKKQPAHISPSSRPAELLEP 104 P PS A R +PA SP+SRPA P Sbjct: 218 PSSPSSAPRPARPAGASPASRPATPARP 245
>IF2_XANC8 (Q4UWA2) Translation initiation factor IF-2| Length = 902 Score = 28.9 bits (63), Expect = 9.5 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = +3 Query: 21 PYRPSGARRKKQPAHISPSSRPAELLEP 104 P PS A R +PA SP+SRPA P Sbjct: 204 PSSPSSAPRPARPAGASPASRPATPARP 231 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.313 0.135 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,838,672 Number of Sequences: 219361 Number of extensions: 879424 Number of successful extensions: 2355 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 2268 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2352 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4200495993 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)