ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart25b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YR224_MIMIV (Q5UQB7) Putative BTB/POZ domain-containing protein ... 29 7.9

>YR224_MIMIV (Q5UQB7) Putative BTB/POZ domain-containing protein R224|
          Length = 540

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 17/76 (22%), Positives = 31/76 (40%)
 Frame = +2

Query: 8   TLLQFIHRPFPAGHLSALYHQYCGCYCYIYINQTKRIHHHLPSFLPWGVYIDYIDRRSEK 187
           TL+   H  F + H   +YH  C  Y Y  +N T               + + I    + 
Sbjct: 198 TLINNGHFEFSSIHNKIIYHHVCDIYVYDLLNYTT------------NKFTNPISHTIKS 245

Query: 188 MAMPPAEKVIVVDANP 235
           + + P ++ I+ D++P
Sbjct: 246 IVLTPDQEYIIYDSSP 261


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,912,558
Number of Sequences: 219361
Number of extensions: 1030729
Number of successful extensions: 3009
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3009
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4545742239
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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