>AFR_ARATH (Q8LAW2) Protein AFR (Protein ATTENUATED FAR-RED RESPONSE)|
          Length = 372

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 349 RPLLPGLPDDLAIACLIRVPRGDHCKLKLVCRRWLRLLAGNYF 477
           +PL+ GLP+D+A  CL+R+P   H   + V   W + +    F
Sbjct: 26  QPLISGLPNDIAELCLLRLPYPYHALYRSVSSSWNKTITNPRF 68

>PPSB_MYCTU (Q10978) Phenolpthiocerol synthesis polyketide synthase ppsB|
          Length = 1538

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = -3

Query: 399 DEASDGEVVGKAGEQWPLPVASAVSPRRSLVAQWVDGGSEAGLHARSGSRNVPA--GGRD 226
           D AS    V      WP    +A  PRR+ V+ +  GG+ A +    GS   P   GG D
Sbjct: 413 DAASTRFFVPTQNSPWP----TAEGPRRAAVSSFGLGGTNAHVIIEQGSELAPVSEGGED 468

Query: 225 TGGS 214
           TG S
Sbjct: 469 TGVS 472

>MOVP_ACLSP (P27739) Putative movement protein (50.8 kDa protein) (ORF2)|
          Length = 460

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 12/105 (11%)
 Frame = -3

Query: 399 DEASDGEVVGKAGEQWPLPVASAVSPRRSLVAQWVDGGS---EAGLHARSGSR--NV--- 244
           ++ S  E   + G +     +  +S RR   + W D G+   + G+H R  S   NV   
Sbjct: 355 EDGSSSEFAAQGGRK-----SKGISGRRKQTSSWKDRGNPGTDTGVHLREHSDPGNVRAD 409

Query: 243 ----PAGGRDTGGSLRSAQACRAIDQRSLDPSIHGWLFLKQRIEN 121
               P+GG +  G   S +  +      LD S   +LF  +  +N
Sbjct: 410 GVSGPSGGSEINGGSISPRVLQPEGSGQLDQSFQDYLFGPEHQQN 454

>TRPC_HELPY (O25867) Tryptophan biosynthesis protein trpCF [Includes:|
           Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
           (IGPS); N-(5'-phospho-ribosyl)anthranilate isomerase (EC
           5.3.1.24) (PRAI)]
          Length = 452

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = -1

Query: 293 MEALRLDCTQGLDLGTCLPADATPAALSALHKHAELSTRGAWIRLSMAGCS*SKESRIYK 114
           +  L+ D    L L   LP DA   + S ++ HA++     ++   + G S  KE  + K
Sbjct: 185 LHTLKTDINHTLKLRPLLPKDALIISESGIYSHAQIKALAPYVNGFLVGSSLMKEKDLKK 244

Query: 113 PLTTLI 96
               LI
Sbjct: 245 ACIKLI 250

>DBP2_ASPFU (Q4X195) ATP-dependent RNA helicase dbp2 (EC 3.6.1.-)|
          Length = 547

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -3

Query: 330 VSPRRSLVAQWVDGGSEAGLHARSGSRNVPAGGRDTGGSLRSAQA 196
           + PR + +A++  GG   G + R G R    GGR  GG+  ++ A
Sbjct: 494 IDPRLAEMARYSGGGGGHGGYGRWGGRGGRGGGRGRGGTYTASNA 538

>GATA_COXBU (Q83BM9) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)|
           (Glu-ADT subunit A)
          Length = 483

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 297 VDGGSEAGLHARSGSRNVP-AGGRDTGGSLRSAQA 196
           V GGS  G  A   +R VP A G DTGGS+R   A
Sbjct: 147 VPGGSSGGSAAAVAARLVPGATGTDTGGSIRQPAA 181

>FOG1_MOUSE (O35615) Zinc finger protein ZFPM1 (Zinc finger protein multitype|
           1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1)
          Length = 995

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 20/46 (43%), Positives = 23/46 (50%)
 Frame = +2

Query: 191 RHACAERREPPVSRPPAGTFRDPDLACNPASEPPSTH*ATRDRRGL 328
           R+ CA R +PP  RPPA T   P  A    + PP     TR RR L
Sbjct: 716 RYYCASRHDPPPRRPPAPT-TAPGPAAPALTAPPV---RTRRRRKL 757

>DPO3A_MYCLE (Q9X7F0) DNA polymerase III alpha subunit (EC 2.7.7.7)|
          Length = 1177

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 23/59 (38%), Positives = 27/59 (45%)
 Frame = -3

Query: 270 HARSGSRNVPAGGRDTGGSLRSAQACRAIDQRSLDPSIHGWLFLKQRIENLQATHHPDI 94
           HARS    V  G     GSL    A  A+    +DP  HG LF  +R  N + T  PDI
Sbjct: 366 HARSVGIRVGPGRGSAAGSL----AAYALGITDIDPIPHGLLF--ERFLNPERTSMPDI 418

>TRPC_HELPJ (Q9ZJU8) Tryptophan biosynthesis protein trpCF [Includes:|
           Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
           (IGPS); N-(5'-phospho-ribosyl)anthranilate isomerase (EC
           5.3.1.24) (PRAI)]
          Length = 452

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = -1

Query: 293 MEALRLDCTQGLDLGTCLPADATPAALSALHKHAELSTRGAWIRLSMAGCS*SKESRIYK 114
           +  L+ D    L+L   LP DA   + S ++ HA++      +   + G S  KE  + K
Sbjct: 185 LHTLKTDIFHTLELRPLLPKDAIIISESGIYSHAQIKALAPCVNGFLVGSSLMKEKDLKK 244

Query: 113 PLTTLI 96
               LI
Sbjct: 245 ACIKLI 250

>GATA_PSESM (Q87WR9) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)|
           (Glu-ADT subunit A)
          Length = 483

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 297 VDGGSEAGLHARSGSRNVPAG-GRDTGGSLRSAQA 196
           V GGS  G  A   +R +PA  G DTGGS+R   A
Sbjct: 147 VPGGSSGGSAAAVAARLLPAATGTDTGGSIRQPAA 181

>GATA_PSEAE (Q9HVT8) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)|
           (Glu-ADT subunit A)
          Length = 484

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 297 VDGGSEAGLHARSGSRNVPAG-GRDTGGSLRSAQA 196
           V GGS  G  A   +R +PA  G DTGGS+R   A
Sbjct: 148 VPGGSSGGSAAAVAARLLPAATGTDTGGSIRQPAA 182

>YSYF_CAEEL (Q8TA81) Hypothetical F-box protein ZK328.6|
          Length = 394

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +1

Query: 343 GQRPLLPGLPDDLAIACLIRVPRGDHCKLKLVCRRWLRLLAGNY 474
           G R ++P +PD +      +      CK++ VCRRW  ++   +
Sbjct: 5   GNRKVIPNMPDLILRKIFDQYDYPVLCKMERVCRRWTNIINSKF 48

>OPGH_PSEPK (Q88D04) Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-)|
          Length = 857

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -1

Query: 266 QGLDLGTCLPADATPAALSALHKHAELSTRGAWI 165
           +GLDL T L   + P ALS LH+        AWI
Sbjct: 793 KGLDLNTRLALLSDPVALSRLHEQVWAEHNAAWI 826

>FBRL_YEAST (P15646) Fibrillarin (Nucleolar protein 1)|
          Length = 327

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = -3

Query: 291 GGSEAGLHARSGSRNVPAGGRDTGGSLRSAQACRAIDQRSLDPSIHGWLFLKQRIENLQA 112
           GGS  G   R GSR    GG   GG   +A   R   +  ++P  H  +++ +  E+L  
Sbjct: 49  GGSRGGFGGRGGSRGGARGG-SRGGRGGAAGGARGGAKVVIEPHRHAGVYIARGKEDLLV 107

Query: 111 T 109
           T
Sbjct: 108 T 108

>BUD9_YEAST (P53226) Bud site selection protein BUD9|
          Length = 547

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +2

Query: 251 RDPDLACNPASEPPSTH*ATRDRRGLTAEATGNGHCSPAFPTTS 382
           RDP++A  P   P S         G +AE   NGH S    +TS
Sbjct: 119 RDPEVAAFPLPPPNSNERNRNSSNGSSAETNLNGHSSSGTISTS 162

>GATA_PSEPK (Q88PB9) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)|
           (Glu-ADT subunit A)
          Length = 483

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 297 VDGGSEAGLHARSGSRNVPAG-GRDTGGSLRSAQA 196
           V GGS  G  A   +R +PA  G DTGGS+R   A
Sbjct: 147 VPGGSSGGSAAAVAARLLPATTGTDTGGSIRQPAA 181

>RAA3_CHLRE (Q9FEC4) Trans-splicing factor Raa3, chloroplast precursor|
          Length = 1783

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 20/67 (29%), Positives = 23/67 (34%), Gaps = 6/67 (8%)
 Frame = -3

Query: 405 HADEASDGEVVGKAGEQWPL------PVASAVSPRRSLVAQWVDGGSEAGLHARSGSRNV 244
           H D+  D  +   AGE W        P A   SP     A      S  G H+  G    
Sbjct: 264 HRDQGHDERISQTAGEAWKAGAVAAPPAAPTPSPPGLAAAPTRLASSALGTHSSDGDMRR 323

Query: 243 PAGGRDT 223
              GRDT
Sbjct: 324 AVPGRDT 330

>FSHR_MOUSE (P35378) Follicle-stimulating hormone receptor precursor (FSH-R)|
           (Follitropin receptor)
          Length = 692

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -1

Query: 179 RGAWIRLSMAGCS*SKESRIYKPLTTLISHNFY--KLLCGSAP 57
           R  ++ +S  GC    +++IYK  T+ I+HNF+  K  C SAP
Sbjct: 634 RDFFVLMSKFGCY-EVQAQIYKTETSSITHNFHSRKNPCSSAP 675

>YL8J_SCHPO (Q9UTA1) Hypothetical zinc finger protein C25B8.19c in chromosome I|
          Length = 522

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +2

Query: 203 AERREPPVSRPPAGTFRDPDL--ACNPASEPPSTH*ATRDRRGLTAEATGNGHCSPA 367
           A  R PP+S    GTF DP    A   A+ P   H  T       A  T NG+ +PA
Sbjct: 151 ARLRLPPISTILGGTFADPTFLAAAAAAAVPHYAHATTGS--ATDASNTSNGNSNPA 205

>GATA_CHLMU (Q9PL37) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)|
           (Glu-ADT subunit A)
          Length = 491

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
 Frame = -3

Query: 396 EASDGEVVGKAG-EQWPLPVASAVSPRRSLVAQW----VDGGSEAGLHARSGSRNVP-AG 235
           E  DG ++GK   +++ +   +  S  +     W    V GGS  G  A   +R  P A 
Sbjct: 110 EMEDGILLGKLNMDEFAMGSTTRYSAFQHTNNPWDLERVPGGSSGGSAAAVSARFCPIAL 169

Query: 234 GRDTGGSLRSAQA 196
           G DTGGS+R   A
Sbjct: 170 GSDTGGSIRQPAA 182

>Y4KS_RHISN (P55537) Hypothetical 33.2 kDa protein y4kS|
          Length = 301

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 151 AMDRRIQAPLVDSSACLCRAERAAGVASAG 240
           A DRR  A L+D + C C A RA    +AG
Sbjct: 120 AYDRRDYAQLLDDTRCYCAALRAGHAQAAG 149

>PLYD_ASPNG (P22864) Pectin lyase D precursor (EC 4.2.2.10) (PLD) (Pectin lyase|
           I) (PLI)
          Length = 373

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 323 GLTAEATGNGHCSPAFPTTSPSLAS 397
           G  + ATG G  +P +PTT+  L S
Sbjct: 28  GFASSATGGGDATPVYPTTTDELVS 52

>PSMA1_HALMA (Q5V2X8) Proteasome alpha subunit (EC 3.4.25.1) (Multicatalytic|
           endopeptidase complex alpha subunit)
          Length = 260

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
 Frame = +1

Query: 151 AMDRRIQAPLVDSSAC--LCRAERAAGVASAGRHVPRSRPCVQSSLR 285
           A+D+RI++PL++ S+   + +A+   G+ASAG HV  +R  +  + R
Sbjct: 51  AVDKRIRSPLMERSSVEKIHKADDHIGIASAG-HVADARQLIDFARR 96

>CSP_PLAVB (P08677) Circumsporozoite protein precursor (CS)|
          Length = 378

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 20/78 (25%), Positives = 33/78 (42%)
 Frame = -3

Query: 402 ADEASDGEVVGKAGEQWPLPVASAVSPRRSLVAQWVDGGSEAGLHARSGSRNVPAGGRDT 223
           A + +DG+  G      P    +A  P     A    G   AG  A +G+    AGG   
Sbjct: 221 AGDRADGQPAGDRAAGQPAGDRAAGQPAGDRAAGQPAGDRAAGQPAGNGAGGQAAGGNAG 280

Query: 222 GGSLRSAQACRAIDQRSL 169
           GG  ++ +   A +++S+
Sbjct: 281 GGQGQNNEGANAPNEKSV 298

>AK2H_ECOLI (P00562) Bifunctional aspartokinase/homoserine dehydrogenase II|
           (AKII-HDII) [Includes: Aspartokinase II (EC 2.7.2.4);
           Homoserine dehydrogenase II (EC 1.1.1.3)]
          Length = 809

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -3

Query: 429 QLAVITSRHADEASDGEVVGKAGEQWPLPVASAVSPRRSLVAQWVD 292
           +LA +     ++A   EVVG  GE W   + SAV  ++ L A W+D
Sbjct: 107 RLAALLDSGINDAVYAEVVGH-GEVWSARLMSAVLNQQGLPAAWLD 151

>SYV_ACIAD (Q6F8F0) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 971

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 13/77 (16%)
 Frame = -3

Query: 438 HELQLAVITSRHADEASDGEVVGKAGEQWPLPVASAV--------SPRRSLVAQ-----W 298
           H+L +  I +++A+  ++ E + KAGEQ    +A+          + R+ LVAQ     W
Sbjct: 306 HDLPIINIFNKNAEVLAEFEYIAKAGEQISDAIAAPADYVGLERFAARKKLVAQAEAEGW 365

Query: 297 VDGGSEAGLHARSGSRN 247
           +D      L A  G R+
Sbjct: 366 LDQIQPYDLKAPRGDRS 382


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,429,312
Number of Sequences: 219361
Number of extensions: 1227800
Number of successful extensions: 4401
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 4195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4389
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3523384522
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)