ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart25b08 |
|---|---|
| Clone Library Name | barley_pub |
>SELPA_BRARE (Q98SV1) Selenoprotein Pa precursor (zSelPa)| Length = 367 Score = 34.7 bits (78), Expect = 0.20 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 3/60 (5%) Frame = -3 Query: 225 PLPGPPRVDHEGVLRQPLLALGGGRHDGGAQEHQ---HRRRGDHTHGHERCPHHRAQREL 55 P+ PR DH G H+ G EHQ R R H H H HHR Q+++ Sbjct: 195 PVEEEPRQDH-------------GHHEHGHHEHQGEAERHRHGHHHPHHHHHHHRGQQQV 241
>CSUP_DROME (Q9V3A4) Protein catecholamines up| Length = 449 Score = 32.3 bits (72), Expect = 0.99 Identities = 12/26 (46%), Positives = 13/26 (50%) Frame = -3 Query: 150 HDGGAQEHQHRRRGDHTHGHERCPHH 73 HD G H H DH HGH+ HH Sbjct: 72 HDHGHHHHGHDHDHDHDHGHDHGHHH 97
>NAC76_ORYSA (Q5Z6B6) NAC domain-containing protein 76 (ONAC076)| Length = 276 Score = 31.6 bits (70), Expect = 1.7 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -3 Query: 144 GGAQEHQHRRRGDHTHGHERCPHH 73 GGA +H+H G H H H PHH Sbjct: 194 GGAADHKHDGAGGHHHHHLMQPHH 217
>GUAA_BRUME (Q8YBL2) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) (GMP synthetase) Length = 507 Score = 31.2 bits (69), Expect = 2.2 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%) Frame = -3 Query: 159 GGRHDGG--AQEHQHRRRGDHTHGHERCPHHR 70 GGRHDGG H+ R+ H H H+R P H+ Sbjct: 473 GGRHDGGFLPLRHEFPRQCGHPH-HQRSPRHQ 503
>BAF1_KLUMA (P33293) Transcription factor BAF1 (ARS-binding factor 1) (Protein| ABF1) (Bidirectionally acting factor) Length = 496 Score = 31.2 bits (69), Expect = 2.2 Identities = 12/42 (28%), Positives = 21/42 (50%) Frame = -3 Query: 183 RQPLLALGGGRHDGGAQEHQHRRRGDHTHGHERCPHHRAQRE 58 ++ + L G GA +HQH+ + H H H+ H+ Q + Sbjct: 273 KEGVYMLPNGHQISGADQHQHQLQHQHQHQHQHQHQHQHQHQ 314
>UVRC_PELUB (Q4FPI1) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 611 Score = 31.2 bits (69), Expect = 2.2 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%) Frame = +1 Query: 229 QVLTCDDT--KDGKRPCVATCDKRCPNECV 312 Q+ CDD+ K+ KRPC+ KRC CV Sbjct: 155 QIRVCDDSTFKNRKRPCILYQIKRCSGPCV 184
>MT_RUTRU (P80593) Metallothionein (MT)| Length = 60 Score = 30.8 bits (68), Expect = 2.9 Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 10/55 (18%) Frame = +1 Query: 241 CDDTKDGKRPCVATCD------KRCPNECVVLCPG----CKTYCMCDFYPGVSCG 375 CD K G C ATC C C CP C + C+C G SCG Sbjct: 4 CDCAKTGTCNCGATCKCTNCQCTTCKKSCCTCCPSGCSKCASGCVC---KGNSCG 55
>HRG_BOVIN (P33433) Histidine-rich glycoprotein (Histidine-proline-rich| glycoprotein) (HPRG) (Fragments) Length = 396 Score = 30.4 bits (67), Expect = 3.8 Identities = 22/59 (37%), Positives = 23/59 (38%), Gaps = 8/59 (13%) Frame = -3 Query: 225 PLPGPP---RVDHEGVLRQPLLALGGGR--HDGGAQEHQ---HRRRGDHTHGHERCPHH 73 PLP PP R H P G R HD + EH H G H HGH HH Sbjct: 232 PLPFPPPGLRCPHP-----PFGTKGNHRPPHDHSSDEHHPHGHHPHGHHPHGHHPHGHH 285
>TYY1_MOUSE (Q00899) Transcriptional repressor protein YY1 (Yin and yang 1)| (YY-1) (Delta transcription factor) (NF-E1) (UCR-motif DNA-binding protein) Length = 414 Score = 30.4 bits (67), Expect = 3.8 Identities = 14/30 (46%), Positives = 14/30 (46%) Frame = -3 Query: 162 GGGRHDGGAQEHQHRRRGDHTHGHERCPHH 73 GGG H GG H H G H H H HH Sbjct: 55 GGGDHGGGGGGHGH--AGHHHHHHHHHHHH 82
>MT1_COLLI (P15786) Metallothionein-1 (MT-1) (Metallothionein-I) (MT-I)| Length = 63 Score = 30.0 bits (66), Expect = 4.9 Identities = 14/45 (31%), Positives = 17/45 (37%) Frame = +1 Query: 238 TCDDTKDGKRPCVATCDKRCPNECVVLCPGCKTYCMCDFYPGVSC 372 TC D K +C K C + C C C C+C P C Sbjct: 15 TCGDNCKCKNCKCTSCKKGCCSCCPAGCAKCAQGCVCKGPPSAKC 59
>BMPER_MOUSE (Q8CJ69) BMP-binding endothelial regulator protein precursor (Bone| morphogenetic protein-binding endothelial cell precursor-derived regulator) (Crossveinless-2 protein) (mCV2) Length = 685 Score = 29.6 bits (65), Expect = 6.4 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 3/105 (2%) Frame = +1 Query: 250 TKDGKRPCVATCDKRCPNECVVLCPGCKTYCMCDFYPGVSC--GDPRFTGADGNNFYFHG 423 T+ K+ CV CP ++ GC +C PGV GDP + DG F F G Sbjct: 329 TECRKKQCVPVSS--CPQGKILNRKGCCP--ICTEKPGVCTVFGDPHYNTFDGRTFNFQG 384 Query: 424 KKDQDFCIVSDADLHINA-HFIGKRHPAMSRDFTWIQALGIRFAD 555 + + D + + K +R F+W +++ + + Sbjct: 385 --TCQYVLTKDCSSPASPFQVLVKNDARRTRSFSWTKSVELMLGE 427
>TRAH4_ECOLI (Q00190) Protein traH| Length = 118 Score = 29.6 bits (65), Expect = 6.4 Identities = 26/86 (30%), Positives = 31/86 (36%), Gaps = 2/86 (2%) Frame = +1 Query: 151 PAAAQGKKGLPKNSLVIHPGRSGKRNQVLTCDDTKDGKRPCVATCDKRCPNECVVLCPG- 327 P AA G S P S T D + +RP T +RCPN P Sbjct: 29 PQAATATDGTLAPSAPAEPSHSASP----TLDALDESRRPKAKTVCERCPNSVWFASPAE 84 Query: 328 CKTYCMCDFYPGVSCGDP-RFTGADG 402 K YC F S +P + T DG Sbjct: 85 LKCYCRVMFLVTWSSKEPNQLTHCDG 110
>YV59_CAEEL (P50439) Hypothetical protein F53A9.9| Length = 147 Score = 29.3 bits (64), Expect = 8.4 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -3 Query: 150 HDGGAQEHQHRRRGDHTHGHERCPHHR 70 HDG ++H R+ DH HGH HH+ Sbjct: 121 HDGHHKKHG-RKEHDHHHGHHHGHHHK 146
>MYCB2_HUMAN (O75592) Probable ubiquitin ligase protein MYCBP2 (EC 6.3.2.-) (Myc| binding protein 2) (Protein associated with Myc) (Pam/highwire/rpm-1 protein) Length = 4641 Score = 29.3 bits (64), Expect = 8.4 Identities = 13/44 (29%), Positives = 21/44 (47%) Frame = +1 Query: 208 GRSGKRNQVLTCDDTKDGKRPCVATCDKRCPNECVVLCPGCKTY 339 G+ G++ Q+ CD+ DG+ + C N C LC C + Sbjct: 4213 GKDGQQKQMPMCDNHDDGETAAIILC-----NVCGNLCTDCDRF 4251
>BEX3_RAT (Q6PDU5) Protein BEX3 (Brain-expressed X-linked protein 3 homolog)| (rBex3) (p75NTR-associated cell death executor) (Nerve growth factor receptor-associated protein 1) Length = 130 Score = 29.3 bits (64), Expect = 8.4 Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 1/38 (2%) Frame = -3 Query: 162 GGGRHDGGAQEHQHRRRGDHTHGHERCPHHRAQ-RELA 52 GG H A + H +H H H H R Q R LA Sbjct: 26 GGEGHQPAANNNNHNHNHNHNHNHNHNHHRRGQARRLA 63
>MT_CRAVI (P23038) Metallothionein (MT)| Length = 74 Score = 29.3 bits (64), Expect = 8.4 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = +1 Query: 292 RCPNECVVLCPGCKTYCMCDFYPGVSCGD 378 +C ++C C GCK C C G CG+ Sbjct: 30 KCGDDCK--CAGCKVKCSCTSEGGCKCGE 56
>MT_CARAU (P52723) Metallothionein (MT)| Length = 60 Score = 29.3 bits (64), Expect = 8.4 Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 10/55 (18%) Frame = +1 Query: 241 CDDTKDGKRPCVATCD----------KRCPNECVVLCPGCKTYCMCDFYPGVSCG 375 CD K G C ATC K C + C C C + C+C G SCG Sbjct: 4 CDCAKTGACNCGATCKCTNCQCTTCKKSCCSCCPSGCSKCASGCVC---KGNSCG 55
>MTA_CARCW (Q8AWG2) Metallothionein A (MT-A)| Length = 60 Score = 29.3 bits (64), Expect = 8.4 Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 10/55 (18%) Frame = +1 Query: 241 CDDTKDGKRPCVATCD----------KRCPNECVVLCPGCKTYCMCDFYPGVSCG 375 CD K G C ATC K C + C C C + C+C G SCG Sbjct: 4 CDCAKTGPCNCGATCKCTNCQCTTCKKSCCSCCPSGCSKCASGCVC---KGNSCG 55
>MT2_CYPCA (Q9I9I0) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)| Length = 60 Score = 29.3 bits (64), Expect = 8.4 Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 10/55 (18%) Frame = +1 Query: 241 CDDTKDGKRPCVATCD----------KRCPNECVVLCPGCKTYCMCDFYPGVSCG 375 CD K G C ATC K C + C C C + C+C G SCG Sbjct: 4 CDCAKTGTCNCGATCKCTNCQCTTCKKSCCSCCPSGCSKCASGCVC---KGNSCG 55
>ASP1_ANISI (O77416) Serine protease inhibitor 1 precursor (ASPI-1)| Length = 77 Score = 29.3 bits (64), Expect = 8.4 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%) Frame = +1 Query: 274 VATCDKRC-PNECVVLCPGCKTYCMCDFYP-GVSCGDPR 384 +AT + +C PNE CPGC+ C P CGDP+ Sbjct: 14 LATAEHQCGPNEQWSDCPGCELQCGESDKPCPAMCGDPK 52
>RELN_MOUSE (Q60841) Reelin precursor (EC 3.4.21.-) (Reeler protein)| Length = 3461 Score = 29.3 bits (64), Expect = 8.4 Identities = 13/45 (28%), Positives = 23/45 (51%) Frame = +1 Query: 352 FYPGVSCGDPRFTGADGNNFYFHGKKDQDFCIVSDADLHINAHFI 486 F+PG + +DGN+ YFHG + +F + D+ ++ I Sbjct: 375 FFPGATV--KHSCQSDGNSIYFHGNEGSEFNFATTRDVDLSTEDI 417
>UREE_RALSO (Q8XXT2) Urease accessory protein ureE| Length = 211 Score = 29.3 bits (64), Expect = 8.4 Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 7/37 (18%) Frame = -3 Query: 159 GGRHDGGAQE-HQHRRRGDHTHGH------ERCPHHR 70 G HD G H H DH HGH PHHR Sbjct: 173 GHSHDRGCDHSHSHSHDHDHDHGHVHGPGCGHAPHHR 209
>RELN_HUMAN (P78509) Reelin precursor (EC 3.4.21.-)| Length = 3460 Score = 29.3 bits (64), Expect = 8.4 Identities = 13/45 (28%), Positives = 23/45 (51%) Frame = +1 Query: 352 FYPGVSCGDPRFTGADGNNFYFHGKKDQDFCIVSDADLHINAHFI 486 F+PG + +DGN+ YFHG + +F + D+ ++ I Sbjct: 374 FFPGATV--KHSCQSDGNSIYFHGNEGSEFNFATTRDVDLSTEDI 416
>HRG_HUMAN (P04196) Histidine-rich glycoprotein precursor| (Histidine-proline-rich glycoprotein) (HPRG) Length = 525 Score = 29.3 bits (64), Expect = 8.4 Identities = 11/27 (40%), Positives = 12/27 (44%) Frame = -3 Query: 153 RHDGGAQEHQHRRRGDHTHGHERCPHH 73 +H G H H G H HGH HH Sbjct: 379 QHPHGHHPHGHHPHGHHPHGHHPHGHH 405 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,351,184 Number of Sequences: 219361 Number of extensions: 1229352 Number of successful extensions: 4861 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 4107 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4699 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4872342800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
