ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart25b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 74 2e-13
2EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule... 73 7e-13
3APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 46 7e-05
4APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 43 8e-04
5LIP1_PHOLU (P40601) Lipase 1 precursor (EC 3.1.1.3) (Triacylglyc... 38 0.019
6ITAX_HUMAN (P20702) Integrin alpha-X precursor (Leukocyte adhesi... 37 0.033
7TYSY_ZYMMO (Q9Z671) Thymidylate synthase (EC 2.1.1.45) (TS) (TSase) 31 3.1
8PHF8_MOUSE (Q80TJ7) PHD finger protein 8 30 5.3
9ZN567_HUMAN (Q8N184) Zinc finger protein 567 30 6.9
10Y1288_MYCBO (P64784) Hypothetical protein Mb1288c 30 6.9
11Y1258_MYCTU (P64783) Hypothetical protein Rv1258c/MT1297 30 6.9
12MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosi... 30 6.9
13SNPC4_HUMAN (Q5SXM2) snRNA-activating protein complex subunit 4 ... 29 9.0

>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 41/86 (47%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
 Frame = +3

Query: 174 YAAIFNFGDSLVDAGNLVVDGIPEYLATAKLPYGMTYFGYPTGRCSDGRLVVDFIAQELG 353
           + AIFNFGDS  D G     G+      A  P+G ++FG P GR  DGRLV+DFIA+ LG
Sbjct: 28  FPAIFNFGDSNSDTG-----GLSAAFGQAGPPHGSSFFGSPAGRYCDGRLVIDFIAESLG 82

Query: 354 LPLLPP-SKARNATFHHGANFAITGA 428
           LP L     +  + F HGANFA  G+
Sbjct: 83  LPYLSAFLDSVGSNFSHGANFATAGS 108



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>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific|
           protein homolog) (Latex allergen Hev b 13)
          Length = 391

 Score = 72.8 bits (177), Expect = 7e-13
 Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
 Frame = +3

Query: 174 YAAIFNFGDSLVDAGNLVVDGIPEYLATAKLPYGMTYFGYPTGRCSDGRLVVDFIAQELG 353
           + AIFNFGDS  D G       P        PYG T+F   TGR SDGRL++DFIA+   
Sbjct: 32  FPAIFNFGDSNSDTGGKAAAFYP-----LNPPYGETFFHRSTGRYSDGRLIIDFIAESFN 86

Query: 354 LPLLPP-SKARNATFHHGANFAITGAT-ALDTSYFVAKG 464
           LP L P   +  + F HGA+FA  G+T  L T+   A G
Sbjct: 87  LPYLSPYLSSLGSNFKHGADFATAGSTIKLPTTIIPAHG 125



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>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 46.2 bits (108), Expect = 7e-05
 Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 11/131 (8%)
 Frame = +3

Query: 180 AIFNFGDSLVDAGNLVVDGIPEYLATAKLPYGMTY-FGYPTGRCSDGRLVVDFIAQELGL 356
           A+F FGDS+ D GN   + +   L     PYGM +  G  TGR S+GR+  D+I++ LG+
Sbjct: 125 AVFFFGDSIFDTGNN--NNLDTKLKCNYRPYGMDFPMGVATGRFSNGRVASDYISKYLGV 182

Query: 357 PLLPP----------SKARNATFHHGANFAITGATALDTSYFVAKGLGKTVWNSGSLHTQ 506
             + P          ++ + +    G +FA  GA  L  +           W   ++  Q
Sbjct: 183 KEIVPAYVDKKLQQNNELQQSDLLTGVSFASGGAGYLPQT--------SESWKVTTMLDQ 234

Query: 507 IKWLQEMKPKI 539
           + + Q+ K ++
Sbjct: 235 LTYFQDYKKRM 245



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>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
 Frame = +3

Query: 180 AIFNFGDSLVDAGNLVVDGIPEYLATAKLPYGMTY-FGYPTGRCSDGRLVVDFIAQELGL 356
           A+F FGDS+ D GN   + +   + +   PYGM + F   TGR S+G +  D++A+ +G+
Sbjct: 204 AVFFFGDSVFDTGN--NNNLETKIKSNYRPYGMDFKFRVATGRFSNGMVASDYLAKYMGV 261

Query: 357 PLLPPS----KARNATFHHGANFAITGA 428
             + P+    K +      G +FA  GA
Sbjct: 262 KEIVPAYLDPKIQPNDLLTGVSFASGGA 289



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>LIP1_PHOLU (P40601) Lipase 1 precursor (EC 3.1.1.3) (Triacylglycerol lipase)|
          Length = 645

 Score = 38.1 bits (87), Expect = 0.019
 Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
 Frame = +3

Query: 165 ADKYAAIFNFGDSLVDAGN---LVVDGIPEYLATAKLPYGMTYFGYPTGRCSDGRLVVDF 335
           A  Y  ++ FGDSL D GN     VDGI                       ++ +L  DF
Sbjct: 22  AHAYNNLYVFGDSLSDGGNNGRYTVDGI---------------------NGTESKLYNDF 60

Query: 336 IAQELGLPLLPPSKARNATFHHGANFAITGATAL 437
           IAQ+LG+ L+   K        G N+A  GATA+
Sbjct: 61  IAQQLGIELVNSKKG-------GTNYAAGGATAV 87



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>ITAX_HUMAN (P20702) Integrin alpha-X precursor (Leukocyte adhesion|
           glycoprotein p150,95 alpha chain) (Leukocyte adhesion
           receptor p150,95) (Leu M5) (CD11c antigen)
          Length = 1163

 Score = 37.4 bits (85), Expect = 0.033
 Identities = 33/88 (37%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
 Frame = +3

Query: 192 FGDSLVD-AGNLVVDGIPEYLATAKLPYGMTYFGYPTGRCSDGRLVV--DFIAQELGLPL 362
           FGDS+V  A + VV G P+ +  A    G+   GY TG C    L V  + +   LGL L
Sbjct: 37  FGDSVVQYANSWVVVGAPQKITAANQTGGLYQCGYSTGACEPIGLQVPPEAVNMSLGLSL 96

Query: 363 ---LPPSK--ARNATFHH--GANFAITG 425
                PS+  A   T HH  G N  +TG
Sbjct: 97  ASTTSPSQLLACGPTVHHECGRNMYLTG 124



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>TYSY_ZYMMO (Q9Z671) Thymidylate synthase (EC 2.1.1.45) (TS) (TSase)|
          Length = 296

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = +3

Query: 381 RNATFHHGANFAITGATALDTSYFVAKGL--GKTVWNSGSLHTQIKWLQEMKPKICSSP 551
           R+A    G  F + GA AL        GL  G  VW  G +H     + +MK ++   P
Sbjct: 198 RSADVFLGLPFNLVGAAALQAMLADQAGLALGDLVWTGGDVHIYRNHIDQMKEQLAREP 256



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>PHF8_MOUSE (Q80TJ7) PHD finger protein 8|
          Length = 1023

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 16/68 (23%), Positives = 26/68 (38%)
 Frame = -2

Query: 490 PEFHTVLPSPLATK*LVSSAVAPVMAKLAPWWNVALRALDGGSSGSPSSCAMKSTTRRPS 311
           P     +   L    L SS+ +P  + L  WW        G SS    + +    ++R  
Sbjct: 716 PSTQEAIQGMLCMANLQSSSSSPATSSLQAWWTGGQERSSGSSSSGLGTVSSSPASQRTP 775

Query: 310 EQRPVGYP 287
            +RP+  P
Sbjct: 776 GKRPIKRP 783



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>ZN567_HUMAN (Q8N184) Zinc finger protein 567|
          Length = 616

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 20/68 (29%), Positives = 28/68 (41%)
 Frame = +3

Query: 390 TFHHGANFAITGATALDTSYFVAKGLGKTVWNSGSLHTQIKWLQEMKPKICSSPEECRGL 569
           +FH  AN  +   T      ++    GK+     +L    K   E KP ICS   EC   
Sbjct: 370 SFHQKANLTVHQRTHTGEKPYICNECGKSFSQKTTLALHEKTHNEEKPYICS---ECGKS 426

Query: 570 FRRSLFIV 593
           FR+   +V
Sbjct: 427 FRQKTTLV 434



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>Y1288_MYCBO (P64784) Hypothetical protein Mb1288c|
          Length = 419

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 545 AADFGLHLLQPLDLRVQGAGVPHRLAQPLG 456
           A  FGL +L    L+++GAG PH  ++P G
Sbjct: 178 ATAFGLSILAIAALQLEGAGKPHHTSRPQG 207



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>Y1258_MYCTU (P64783) Hypothetical protein Rv1258c/MT1297|
          Length = 419

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 545 AADFGLHLLQPLDLRVQGAGVPHRLAQPLG 456
           A  FGL +L    L+++GAG PH  ++P G
Sbjct: 178 ATAFGLSILAIAALQLEGAGKPHHTSRPQG 207



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>MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosin-15)|
          Length = 3530

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 391  VALRALDGGSSGSPSSCAMKSTTRRPSEQRPV 296
            +A R   GG  G  SS   + T RRP E +P+
Sbjct: 2412 IAYRMKGGGQPGGGSSSGTEDTPRRPPEPKPI 2443



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>SNPC4_HUMAN (Q5SXM2) snRNA-activating protein complex subunit 4 (SNAPc subunit|
           4) (snRNA-activating protein complex 190 kDa subunit)
           (SNAPc 190 kDa subunit) (Proximal sequence
           element-binding transcription factor alpha subunit)
           (PSE-binding factor alpha
          Length = 1469

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +2

Query: 452 RGQGAGQDGVELRLPAHADQVAAGDEAQNLQLPRRVQGPVPAVA 583
           +G  A Q G +    A     A G+E   +Q+P R  GPVP  A
Sbjct: 602 KGSSASQGGSK---EASTTAAAPGEETSPVQVPARAHGPVPRSA 642


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,134,932
Number of Sequences: 219361
Number of extensions: 1155264
Number of successful extensions: 4092
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4083
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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